Wall clock time and date at job start Mon Mar 30 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48499 * 109.46919 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47170 * 119.99692 * 3 2 1 6 6 H 1.48498 * 109.47216 * 240.00010 * 3 2 1 7 7 C 1.37880 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00114 * 345.66770 * 7 2 1 9 9 C 1.50694 * 119.99843 * 165.65971 * 7 2 1 10 10 H 1.08996 * 109.46689 * 54.44934 * 9 7 2 11 11 C 1.53039 * 109.46496 * 174.42205 * 9 7 2 12 12 C 1.53120 * 109.28160 * 179.19691 * 11 9 7 13 13 H 1.08993 * 109.52490 * 62.24662 * 12 11 9 14 14 C 1.52995 * 109.57258 * 182.40923 * 12 11 9 15 15 C 1.52583 * 109.22787 * 300.94522 * 14 12 11 16 16 C 1.53092 * 109.95725 * 169.00779 * 15 14 12 17 17 S 1.81743 * 108.84350 * 63.02772 * 16 15 14 18 18 O 1.42095 * 109.47426 * 190.73898 * 17 16 15 19 19 C 1.81752 * 102.21927 * 306.73535 * 17 16 15 20 20 C 1.52583 * 109.22484 * 179.71392 * 14 12 11 21 21 C 1.53122 * 109.15557 * 302.34109 * 12 11 9 22 22 C 1.53035 * 109.27747 * 57.65950 * 21 12 11 23 23 N 1.46849 * 109.52390 * 300.81249 * 22 21 12 24 24 H 0.97000 * 120.00002 * 174.80901 * 1 2 3 25 25 H 1.09004 * 109.49776 * 299.13624 * 11 9 7 26 26 H 1.09001 * 109.50386 * 59.25058 * 11 9 7 27 27 H 1.08997 * 109.22487 * 60.31115 * 14 12 11 28 28 H 1.09003 * 109.39119 * 289.15752 * 15 14 12 29 29 H 1.09005 * 109.38638 * 48.86141 * 15 14 12 30 30 H 1.09001 * 109.57693 * 303.21716 * 16 15 14 31 31 H 1.09001 * 109.57678 * 182.83421 * 16 15 14 32 32 H 1.09000 * 109.57333 * 293.45244 * 19 17 16 33 33 H 1.08998 * 109.68018 * 173.13444 * 19 17 16 34 34 H 1.09007 * 109.38685 * 311.14528 * 20 14 12 35 35 H 1.08996 * 109.39134 * 70.84175 * 20 14 12 36 36 H 1.08993 * 109.50699 * 297.71485 * 21 12 11 37 37 H 1.09005 * 109.49887 * 177.59523 * 21 12 11 38 38 H 1.09007 * 109.46058 * 180.80166 * 22 21 12 39 39 H 1.08999 * 109.45909 * 60.82512 * 22 21 12 40 40 H 1.00901 * 111.00410 * 185.84181 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4897 -2.1148 0.2325 9 6 3.4763 -1.2145 -0.3227 10 1 4.0023 -0.5227 0.3351 11 6 4.0238 -2.6288 -0.1177 12 6 5.5146 -2.6493 -0.4665 13 1 6.0553 -1.9840 0.2065 14 6 6.0554 -4.0732 -0.3216 15 6 5.8402 -4.5489 1.1121 16 6 6.1192 -6.0509 1.2117 17 16 7.8652 -6.3517 0.8068 18 8 8.0818 -7.7474 0.6512 19 6 8.0335 -5.5291 -0.8051 20 6 7.5390 -4.0858 -0.6776 21 6 5.6992 -2.1764 -1.9111 22 6 5.1032 -0.7752 -2.0641 23 7 3.6761 -0.8087 -1.7198 24 1 -0.4850 -0.8366 -0.0760 25 1 3.8894 -2.9237 0.9230 26 1 3.4889 -3.3236 -0.7654 27 1 5.5172 -4.7325 -1.0025 28 1 6.5153 -4.0105 1.7773 29 1 4.8097 -4.3519 1.4079 30 1 5.4833 -6.5880 0.5079 31 1 5.9152 -6.3938 2.2261 32 1 7.4351 -6.0560 -1.5482 33 1 9.0798 -5.5310 -1.1107 34 1 7.6883 -3.5671 -1.6247 35 1 8.1032 -3.5777 0.1043 36 1 5.1908 -2.8639 -2.5869 37 1 6.7620 -2.1481 -2.1516 38 1 5.2204 -0.4413 -3.0951 39 1 5.6214 -0.0855 -1.3979 40 1 3.2387 0.0818 -1.9038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259712543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:14 Heat of formation + Delta-G solvation = -58.584637 kcal Electronic energy + Delta-G solvation = -19675.695353 eV Core-core repulsion = 16808.748072 eV Total energy + Delta-G solvation = -2866.947281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.11378 -36.41732 -35.67140 -32.89460 -31.75218 -31.29527 -30.08425 -26.69996 -24.97632 -23.32606 -22.28891 -20.92554 -19.95189 -19.01606 -17.56465 -17.49719 -16.10452 -15.54425 -15.20143 -14.62608 -14.23012 -14.17705 -13.89090 -13.68690 -13.49841 -13.12963 -12.92035 -12.75053 -12.46687 -12.10835 -11.75497 -11.61416 -11.28291 -11.17381 -11.03605 -10.84205 -10.60546 -10.41815 -10.21649 -10.03065 -9.89483 -9.48171 -9.46362 -8.91263 -8.42483 -8.36409 -7.30228 -6.46813 -4.13003 1.46275 2.41687 3.22972 3.34044 3.51428 3.66115 4.40679 4.55136 4.69151 4.72930 4.93032 5.02443 5.05959 5.20974 5.28777 5.42928 5.45998 5.56585 5.65808 5.73669 5.79902 5.86748 5.89765 5.96892 6.04126 6.11929 6.23243 6.26360 6.35444 6.48245 6.58115 6.65959 6.71153 6.86822 7.20881 7.84734 8.33150 8.42526 8.51236 8.86486 9.56525 10.89418 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.035302 B = 0.004551 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.975482 B = 6151.438869 C = 6620.108892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.030 3.970 3 Si 1.048 2.952 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.583 4.583 8 H 0.058 0.942 9 C 0.186 3.814 10 H -0.010 1.010 11 C -0.090 4.090 12 C -0.084 4.084 13 H 0.066 0.934 14 C -0.096 4.096 15 C -0.098 4.098 16 C -0.432 4.432 17 S 1.224 4.776 18 O -0.867 6.867 19 C -0.434 4.434 20 C -0.095 4.095 21 C -0.107 4.107 22 C 0.051 3.949 23 N -0.692 5.692 24 H 0.269 0.731 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.014 0.986 40 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.853 -5.156 1.646 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.175 4.175 3 Si 0.877 3.123 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.621 4.621 8 H 0.076 0.924 9 C 0.080 3.920 10 H 0.007 0.993 11 C -0.128 4.128 12 C -0.103 4.103 13 H 0.084 0.916 14 C -0.115 4.115 15 C -0.136 4.136 16 C -0.570 4.570 17 S 1.424 4.576 18 O -0.862 6.862 19 C -0.572 4.572 20 C -0.134 4.134 21 C -0.145 4.145 22 C -0.079 4.079 23 N -0.328 5.328 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.235 -4.675 2.002 18.930 hybrid contribution -1.046 -1.844 -1.364 2.521 sum 17.189 -6.519 0.638 18.394 Atomic orbital electron populations 1.70798 1.07038 1.30600 1.45399 1.25758 0.96322 1.02309 0.93152 0.83952 0.75293 0.76525 0.76515 1.20839 1.21061 1.21151 1.22026 0.93275 0.95971 1.50867 0.92351 1.19367 0.96707 0.91751 0.84224 0.99266 1.21577 0.92110 0.99068 1.00013 1.21281 0.98046 0.94095 0.96855 0.91596 1.21279 0.95322 0.98266 0.96631 1.21331 1.04297 0.90997 0.96975 1.27558 1.18546 1.03121 1.07779 1.70265 0.94420 0.93470 0.99487 1.93082 1.79482 1.29889 1.83796 1.27567 1.06720 1.05548 1.17373 1.21318 0.95681 0.92858 1.03497 1.21637 0.98866 0.97282 0.96668 1.21871 0.91617 0.95576 0.98885 1.61087 1.09421 1.35790 1.26546 0.92062 0.92413 0.92468 0.91406 0.90374 0.89690 0.89702 0.87043 0.89774 0.87217 0.90401 0.90386 0.91808 0.92538 0.92577 0.96795 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.70 55.43 0.76 -26.55 16 2 C 0.03 0.85 5.36 -17.82 -0.10 0.76 16 3 Si 1.05 24.41 26.37 -169.99 -4.48 19.93 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.05 5.74 56.52 0.32 -5.72 16 7 C -0.58 -16.01 9.07 -34.44 -0.31 -16.32 16 8 H 0.06 1.74 7.99 -52.49 -0.42 1.32 16 9 C 0.19 4.27 1.90 -68.87 -0.13 4.14 16 10 H -0.01 -0.23 6.86 -51.93 -0.36 -0.59 16 11 C -0.09 -1.71 4.17 -26.65 -0.11 -1.82 16 12 C -0.08 -1.22 1.83 -90.50 -0.17 -1.39 16 13 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.10 -1.11 1.53 -91.05 -0.14 -1.25 16 15 C -0.10 -1.01 4.94 -26.90 -0.13 -1.14 16 16 C -0.43 -4.30 6.44 37.21 0.24 -4.06 16 17 S 1.22 11.20 13.75 -107.50 -1.48 9.72 16 18 O -0.87 -13.82 18.14 -35.23 -0.64 -14.46 16 19 C -0.43 -3.89 6.44 37.21 0.24 -3.65 16 20 C -0.10 -0.84 4.95 -26.90 -0.13 -0.98 16 21 C -0.11 -1.57 4.97 -26.65 -0.13 -1.71 16 22 C 0.05 0.88 6.55 -3.83 -0.03 0.85 16 23 N -0.69 -15.09 6.47 -107.98 -0.70 -15.79 16 24 H 0.27 8.15 8.73 -40.82 -0.36 7.80 16 25 H 0.06 1.06 6.30 -51.93 -0.33 0.74 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 29 H 0.08 1.04 5.89 -51.93 -0.31 0.73 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.71 5.92 -51.93 -0.31 0.40 16 35 H 0.08 0.50 8.06 -51.93 -0.42 0.09 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.67 6.32 -51.93 -0.33 0.35 16 38 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.33 7.63 5.27 -39.29 -0.21 7.43 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -34.63 307.26 -9.35 -43.98 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.54 Total: 5.09 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -0.90 Total: -26.56 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.06 Total: -42.33 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.64 Total: -14.46 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.48 Total: 19.93 kcal Atomic # 16 Polarization: 11.20 SS G_CDS: -1.48 Total: 9.72 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.63 -9.35 -43.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.604 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds