Wall clock time and date at job start Mon Mar 30 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48499 * 109.46919 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47170 * 119.99692 * 3 2 1 6 6 H 1.48498 * 109.47216 * 240.00010 * 3 2 1 7 7 C 1.37880 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00114 * 345.66770 * 7 2 1 9 9 C 1.50694 * 119.99843 * 165.65971 * 7 2 1 10 10 H 1.08996 * 109.46689 * 54.44934 * 9 7 2 11 11 C 1.53039 * 109.46496 * 174.42205 * 9 7 2 12 12 C 1.53120 * 109.28160 * 179.19691 * 11 9 7 13 13 H 1.08993 * 109.52490 * 62.24662 * 12 11 9 14 14 C 1.52995 * 109.57258 * 182.40923 * 12 11 9 15 15 C 1.52583 * 109.22787 * 300.94522 * 14 12 11 16 16 C 1.53092 * 109.95725 * 169.00779 * 15 14 12 17 17 S 1.81743 * 108.84350 * 63.02772 * 16 15 14 18 18 O 1.42095 * 109.47426 * 190.73898 * 17 16 15 19 19 C 1.81752 * 102.21927 * 306.73535 * 17 16 15 20 20 C 1.52583 * 109.22484 * 179.71392 * 14 12 11 21 21 C 1.53122 * 109.15557 * 302.34109 * 12 11 9 22 22 C 1.53035 * 109.27747 * 57.65950 * 21 12 11 23 23 N 1.46849 * 109.52390 * 300.81249 * 22 21 12 24 24 H 0.97000 * 120.00002 * 174.80901 * 1 2 3 25 25 H 1.09004 * 109.49776 * 299.13624 * 11 9 7 26 26 H 1.09001 * 109.50386 * 59.25058 * 11 9 7 27 27 H 1.08997 * 109.22487 * 60.31115 * 14 12 11 28 28 H 1.09003 * 109.39119 * 289.15752 * 15 14 12 29 29 H 1.09005 * 109.38638 * 48.86141 * 15 14 12 30 30 H 1.09001 * 109.57693 * 303.21716 * 16 15 14 31 31 H 1.09001 * 109.57678 * 182.83421 * 16 15 14 32 32 H 1.09000 * 109.57333 * 293.45244 * 19 17 16 33 33 H 1.08998 * 109.68018 * 173.13444 * 19 17 16 34 34 H 1.09007 * 109.38685 * 311.14528 * 20 14 12 35 35 H 1.08996 * 109.39134 * 70.84175 * 20 14 12 36 36 H 1.08993 * 109.50699 * 297.71485 * 21 12 11 37 37 H 1.09005 * 109.49887 * 177.59523 * 21 12 11 38 38 H 1.09007 * 109.46058 * 180.80166 * 22 21 12 39 39 H 1.08999 * 109.45909 * 60.82512 * 22 21 12 40 40 H 1.00901 * 111.00410 * 185.84181 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4897 -2.1148 0.2325 9 6 3.4763 -1.2145 -0.3227 10 1 4.0023 -0.5227 0.3351 11 6 4.0238 -2.6288 -0.1177 12 6 5.5146 -2.6493 -0.4665 13 1 6.0553 -1.9840 0.2065 14 6 6.0554 -4.0732 -0.3216 15 6 5.8402 -4.5489 1.1121 16 6 6.1192 -6.0509 1.2117 17 16 7.8652 -6.3517 0.8068 18 8 8.0818 -7.7474 0.6512 19 6 8.0335 -5.5291 -0.8051 20 6 7.5390 -4.0858 -0.6776 21 6 5.6992 -2.1764 -1.9111 22 6 5.1032 -0.7752 -2.0641 23 7 3.6761 -0.8087 -1.7198 24 1 -0.4850 -0.8366 -0.0760 25 1 3.8894 -2.9237 0.9230 26 1 3.4889 -3.3236 -0.7654 27 1 5.5172 -4.7325 -1.0025 28 1 6.5153 -4.0105 1.7773 29 1 4.8097 -4.3519 1.4079 30 1 5.4833 -6.5880 0.5079 31 1 5.9152 -6.3938 2.2261 32 1 7.4351 -6.0560 -1.5482 33 1 9.0798 -5.5310 -1.1107 34 1 7.6883 -3.5671 -1.6247 35 1 8.1032 -3.5777 0.1043 36 1 5.1908 -2.8639 -2.5869 37 1 6.7620 -2.1481 -2.1516 38 1 5.2204 -0.4413 -3.0951 39 1 5.6214 -0.0855 -1.3979 40 1 3.2387 0.0818 -1.9038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:14 Heat of formation + Delta-G solvation = -85.435526 kcal Electronic energy + Delta-G solvation = -19676.859695 eV Core-core repulsion = 16808.748072 eV Total energy + Delta-G solvation = -2868.111623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32612 -37.67174 -36.75586 -34.84043 -32.66028 -32.63473 -31.62104 -27.79648 -26.76312 -24.37000 -23.43403 -22.31658 -21.05980 -20.46330 -19.57412 -18.38823 -17.41746 -16.67374 -16.02509 -15.72953 -15.54608 -15.42735 -15.26500 -15.09182 -14.83951 -14.46081 -14.26923 -13.78777 -13.59597 -13.42297 -13.13791 -12.65189 -12.62725 -12.39814 -12.22153 -12.13991 -12.04619 -11.75909 -11.47321 -11.36966 -11.29379 -10.96259 -10.86950 -10.54778 -10.41585 -9.22422 -8.96985 -8.71527 -6.39789 0.70206 1.38176 1.48766 1.65954 1.68666 2.46683 2.83238 3.01894 3.63244 3.78298 3.79774 3.87999 4.11084 4.17900 4.25013 4.35584 4.46657 4.49560 4.56053 4.62581 4.74583 4.82106 4.90017 4.94490 5.00275 5.00841 5.07813 5.20369 5.22382 5.25746 5.31569 5.37663 5.48394 5.57914 5.71665 5.97659 6.01205 6.49716 6.70233 6.83629 7.40501 8.62184 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.035302 B = 0.004551 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.975482 B = 6151.438869 C = 6620.108892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.022 4.022 3 Si 1.093 2.907 4 H -0.289 1.289 5 H -0.263 1.263 6 H -0.250 1.250 7 C -0.592 4.592 8 H 0.012 0.988 9 C 0.189 3.811 10 H -0.004 1.004 11 C -0.086 4.086 12 C -0.075 4.075 13 H 0.088 0.912 14 C -0.093 4.093 15 C -0.099 4.099 16 C -0.435 4.435 17 S 1.291 4.709 18 O -0.935 6.935 19 C -0.432 4.432 20 C -0.091 4.091 21 C -0.104 4.104 22 C 0.045 3.955 23 N -0.711 5.711 24 H 0.250 0.750 25 H 0.056 0.944 26 H 0.024 0.976 27 H 0.042 0.958 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.124 0.876 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.045 0.955 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.182 -3.563 1.695 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.220 4.220 3 Si 0.914 3.086 4 H -0.215 1.215 5 H -0.188 1.188 6 H -0.175 1.175 7 C -0.630 4.630 8 H 0.030 0.970 9 C 0.081 3.919 10 H 0.014 0.986 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.107 0.893 14 C -0.112 4.112 15 C -0.137 4.137 16 C -0.573 4.573 17 S 1.492 4.508 18 O -0.931 6.931 19 C -0.571 4.571 20 C -0.129 4.129 21 C -0.142 4.142 22 C -0.085 4.085 23 N -0.347 5.347 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.136 0.864 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.584 -3.129 2.051 22.891 hybrid contribution -2.484 -2.397 -1.421 3.733 sum 20.100 -5.526 0.630 20.855 Atomic orbital electron populations 1.70942 1.08475 1.29452 1.48709 1.27323 0.96182 1.06453 0.92029 0.83419 0.74747 0.71653 0.78803 1.21462 1.18753 1.17532 1.22299 0.96162 0.94191 1.50385 0.96985 1.19257 0.93489 0.94081 0.85086 0.98632 1.21493 0.95609 0.95924 0.99404 1.21203 0.94375 0.96459 0.97324 0.89325 1.21227 0.97301 0.95779 0.96855 1.21366 1.03877 0.91375 0.97098 1.27587 1.18788 1.02874 1.08001 1.69445 0.92177 0.90375 0.98814 1.92958 1.80768 1.33980 1.85416 1.27549 1.08005 1.05399 1.16105 1.21357 0.93422 0.92865 1.05302 1.21680 1.01052 0.95251 0.96216 1.22087 0.88612 0.97597 1.00159 1.60887 1.12989 1.35475 1.25379 0.94092 0.92528 0.95661 0.93971 0.86382 0.92259 0.92345 0.85786 0.91891 0.84660 0.89688 0.86334 0.93636 0.88226 0.90892 0.95197 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.27 13.70 21.45 0.29 -58.97 16 2 C -0.02 -1.26 5.36 84.66 0.45 -0.81 16 3 Si 1.09 48.48 26.37 68.60 1.81 50.29 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.25 -9.66 5.74 99.48 0.57 -9.09 16 7 C -0.59 -33.80 9.07 25.60 0.23 -33.57 16 8 H 0.01 0.76 7.99 -2.91 -0.02 0.73 16 9 C 0.19 8.55 1.90 44.19 0.08 8.63 16 10 H 0.00 -0.16 6.86 -2.39 -0.02 -0.18 16 11 C -0.09 -3.29 4.17 30.65 0.13 -3.16 16 12 C -0.08 -1.95 1.83 -10.71 -0.02 -1.97 16 13 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 14 C -0.09 -1.89 1.53 -11.07 -0.02 -1.91 16 15 C -0.10 -1.82 4.94 30.49 0.15 -1.67 16 16 C -0.43 -8.13 6.44 72.01 0.46 -7.67 16 17 S 1.29 20.53 13.75 -56.49 -0.78 19.76 16 18 O -0.94 -29.04 18.14 -148.98 -2.70 -31.74 16 19 C -0.43 -6.22 6.44 72.01 0.46 -5.75 16 20 C -0.09 -1.16 4.95 30.49 0.15 -1.01 16 21 C -0.10 -2.69 4.97 30.65 0.15 -2.54 16 22 C 0.04 1.38 6.55 86.32 0.57 1.94 16 23 N -0.71 -30.04 6.47 -495.55 -3.20 -33.24 16 24 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 25 H 0.06 2.12 6.30 -2.39 -0.02 2.10 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 1.07 8.08 -2.39 -0.02 1.05 16 28 H 0.12 1.24 8.06 -2.39 -0.02 1.23 16 29 H 0.06 1.42 5.89 -2.38 -0.01 1.40 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.04 5.92 -2.38 -0.01 1.03 16 35 H 0.12 0.65 8.06 -2.39 -0.02 0.63 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.78 6.32 -2.38 -0.02 1.76 16 38 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.33 14.32 5.27 -89.69 -0.47 13.84 16 Total: -1.00 -81.27 307.26 -1.40 -82.67 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.37 Total: 20.71 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 2.81 Total: -49.47 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -2.91 Total: -92.22 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -2.70 Total: -31.74 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 1.81 Total: 50.29 kcal Atomic # 16 Polarization: 20.53 SS G_CDS: -0.78 Total: 19.76 kcal Total: -81.27 -1.40 -82.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.767 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds