Wall clock time and date at job start Mon Mar 30 2020 05:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99886 * 2 1 4 4 H 1.48497 * 109.47192 * 239.99907 * 3 2 1 5 5 H 1.48498 * 109.47187 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47350 * 120.00074 * 3 2 1 7 7 C 1.37884 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99859 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.51019 * 307.82222 * 9 7 2 11 11 C 1.52007 * 110.42310 * 70.28159 * 9 7 2 12 12 C 1.54475 * 108.54662 * 225.04370 * 11 9 7 13 13 S 1.82252 * 110.11332 * 321.28623 * 12 11 9 14 14 C 1.79576 * 106.42195 * 319.40271 * 13 12 11 15 15 C 1.55075 * 109.75174 * 87.93290 * 14 13 12 16 16 N 1.39461 * 110.08106 * 288.50745 * 15 14 13 17 17 C 1.46891 * 110.99685 * 193.47685 * 16 15 14 18 18 H 1.09002 * 109.52212 * 171.50966 * 17 16 15 19 19 C 1.53180 * 109.52444 * 51.38810 * 17 16 15 20 20 C 1.53185 * 109.03415 * 183.17430 * 19 17 16 21 21 C 1.53093 * 109.21426 * 56.88237 * 20 19 17 22 22 O 1.42904 * 109.41706 * 302.42391 * 21 20 19 23 23 C 1.42914 * 114.09363 * 61.15673 * 22 21 20 24 24 H 0.96999 * 119.99958 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.62585 * 344.76353 * 11 9 7 26 26 H 1.09007 * 109.62003 * 105.13717 * 11 9 7 27 27 H 1.09000 * 109.36027 * 81.46275 * 12 11 9 28 28 H 1.09001 * 109.35536 * 201.17899 * 12 11 9 29 29 H 1.09005 * 109.41271 * 327.86086 * 14 13 12 30 30 H 1.09003 * 109.41220 * 208.00503 * 14 13 12 31 31 H 1.09000 * 109.36405 * 48.69468 * 15 14 13 32 32 H 1.08999 * 109.36760 * 168.44383 * 15 14 13 33 33 H 1.08997 * 109.54086 * 302.97562 * 19 17 16 34 34 H 1.09000 * 109.54419 * 63.24490 * 19 17 16 35 35 H 1.09008 * 109.46656 * 296.98121 * 20 19 17 36 36 H 1.08997 * 109.57562 * 176.85093 * 20 19 17 37 37 H 1.09002 * 109.47830 * 182.44567 * 21 20 19 38 38 H 1.08999 * 109.49072 * 62.41283 * 21 20 19 39 39 H 1.08995 * 109.47555 * 178.86094 * 23 22 21 40 40 H 1.09000 * 109.47456 * 58.82789 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.5177 -2.5167 0.8067 11 6 0.5702 -2.7185 -1.3407 12 6 -0.8744 -3.2022 -1.0850 13 16 -0.9096 -4.3508 0.3296 14 6 0.5395 -5.3991 0.1687 15 6 1.7509 -4.7297 0.8682 16 7 2.1815 -3.6279 0.1295 17 6 3.5017 -3.1725 0.5848 18 1 3.8811 -2.4135 -0.0994 19 6 4.4690 -4.3598 0.6194 20 6 5.8184 -3.8889 1.1705 21 6 5.6087 -3.2681 2.5541 22 8 4.6760 -2.1900 2.4547 23 6 3.3815 -2.5794 1.9910 24 1 -0.4850 0.8400 0.0004 25 1 0.5495 -1.7822 -1.8982 26 1 1.1161 -3.4713 -1.9095 27 1 -1.5101 -2.3435 -0.8689 28 1 -1.2468 -3.7130 -1.9730 29 1 0.7659 -5.5446 -0.8876 30 1 0.3412 -6.3651 0.6331 31 1 1.4572 -4.4036 1.8660 32 1 2.5653 -5.4497 0.9481 33 1 4.0651 -5.1403 1.2642 34 1 4.6024 -4.7509 -0.3892 35 1 6.2456 -3.1446 0.4983 36 1 6.4964 -4.7385 1.2514 37 1 6.5597 -2.8924 2.9318 38 1 5.2195 -4.0237 3.2365 39 1 2.7281 -1.7075 1.9631 40 1 2.9631 -3.3260 2.6659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259735490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:34 Heat of formation + Delta-G solvation = -20.252382 kcal Electronic energy + Delta-G solvation = -20845.682380 eV Core-core repulsion = 17980.397311 eV Total energy + Delta-G solvation = -2865.285069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71347 -37.13950 -33.73930 -32.53885 -31.58484 -30.77492 -28.08876 -26.48752 -24.45108 -23.38777 -22.84237 -21.70093 -19.87972 -18.78912 -16.89181 -15.74076 -15.51363 -15.34407 -15.15557 -14.80661 -14.35704 -14.13676 -13.86310 -13.45547 -13.06146 -12.67100 -12.34368 -12.10572 -11.97649 -11.73397 -11.33366 -11.21252 -11.09244 -10.95996 -10.69163 -10.61608 -10.44375 -10.08302 -9.98872 -9.75544 -9.48330 -9.13014 -8.87367 -8.67193 -8.47313 -7.08941 -6.74286 -6.08693 -4.11633 2.44705 3.31720 3.35905 3.41010 3.42938 4.36248 4.40589 4.88797 5.16687 5.23795 5.24417 5.30870 5.43646 5.60808 5.62307 5.75177 5.82567 5.87767 5.95317 5.99171 6.05481 6.10736 6.17444 6.28950 6.35825 6.41781 6.49956 6.52150 6.85349 6.99417 7.06204 7.13933 7.38007 7.64360 7.81325 7.83947 7.96766 8.30633 8.71985 8.97246 9.52951 10.98748 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.011454 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.922410 B = 2444.052993 C = 4185.961244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.216 3.784 10 H 0.056 0.944 11 C -0.095 4.095 12 C -0.062 4.062 13 S -0.286 6.286 14 C -0.082 4.082 15 C 0.079 3.921 16 N -0.562 5.562 17 C 0.076 3.924 18 H 0.104 0.896 19 C -0.126 4.126 20 C -0.152 4.152 21 C 0.058 3.942 22 O -0.383 6.383 23 C 0.028 3.972 24 H 0.262 0.738 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.132 0.868 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 -8.778 0.881 10.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.094 0.906 9 C 0.111 3.889 10 H 0.073 0.927 11 C -0.135 4.135 12 C -0.210 4.210 13 S -0.060 6.060 14 C -0.232 4.232 15 C -0.053 4.053 16 N -0.287 5.287 17 C -0.032 4.032 18 H 0.122 0.878 19 C -0.164 4.164 20 C -0.190 4.190 21 C -0.019 4.019 22 O -0.301 6.301 23 C -0.049 4.049 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.150 0.850 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.491 -8.683 1.278 9.859 hybrid contribution 1.074 0.869 -0.396 1.437 sum 5.565 -7.814 0.882 9.634 Atomic orbital electron populations 1.69959 1.05840 1.26825 1.49110 1.24917 0.94757 0.98965 0.94798 0.86710 0.79672 0.83143 0.78941 1.20290 1.21442 1.19871 1.21615 0.93810 0.89865 1.51930 0.90572 1.19522 0.90220 0.85421 0.93724 0.92685 1.22141 0.90392 1.00020 1.00965 1.23965 1.03600 0.98668 0.94741 1.85829 1.34267 1.42140 1.43724 1.23573 0.96134 0.99181 1.04274 1.21089 0.95531 0.94042 0.94641 1.58359 1.04720 1.10487 1.55149 1.22111 0.89471 0.95755 0.95897 0.87835 1.21934 0.94814 0.98531 1.01135 1.22161 0.97939 1.00725 0.98170 1.22484 0.93504 0.90408 0.95532 1.87969 1.22381 1.32893 1.86827 1.23864 0.83941 1.02831 0.94259 0.92867 0.90648 0.93520 0.87688 0.92660 0.89866 0.89056 0.95948 0.91103 0.92237 0.91477 0.91193 0.91759 0.89912 0.94181 0.85021 0.95259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.56 12.76 55.43 0.71 -22.86 16 2 C 0.07 1.79 5.13 -17.82 -0.09 1.70 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -13.30 5.48 -34.44 -0.19 -13.49 16 8 H 0.08 1.90 4.49 -52.49 -0.24 1.67 16 9 C 0.22 4.94 1.40 -69.41 -0.10 4.85 16 10 H 0.06 1.42 6.03 -51.29 -0.31 1.12 16 11 C -0.10 -2.09 5.01 -26.46 -0.13 -2.22 16 12 C -0.06 -1.25 6.65 37.93 0.25 -1.00 16 13 S -0.29 -5.54 20.03 -107.50 -2.15 -7.69 16 14 C -0.08 -1.37 6.02 38.25 0.23 -1.14 16 15 C 0.08 1.39 4.46 -6.55 -0.03 1.36 16 16 N -0.56 -11.04 3.34 -224.97 -0.75 -11.79 16 17 C 0.08 1.43 1.94 -67.58 -0.13 1.30 16 18 H 0.10 2.21 5.74 -51.93 -0.30 1.91 16 19 C -0.13 -1.92 4.89 -26.54 -0.13 -2.05 16 20 C -0.15 -2.05 6.13 -26.59 -0.16 -2.22 16 21 C 0.06 0.84 6.84 37.21 0.25 1.10 16 22 O -0.38 -7.32 10.77 -35.23 -0.38 -7.70 16 23 C 0.03 0.56 5.28 37.20 0.20 0.76 16 24 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.08 1.83 7.24 -51.93 -0.38 1.46 16 26 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 27 H 0.10 2.32 8.14 -51.93 -0.42 1.90 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.38 7.89 -51.80 -0.41 0.97 16 30 H 0.09 1.30 8.14 -51.80 -0.42 0.88 16 31 H 0.02 0.44 6.99 -51.93 -0.36 0.07 16 32 H 0.07 1.10 5.17 -51.93 -0.27 0.83 16 33 H 0.06 0.86 5.91 -51.93 -0.31 0.55 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.13 3.07 5.61 -51.93 -0.29 2.78 16 40 H 0.03 0.56 6.81 -51.93 -0.35 0.21 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -25.98 299.76 -9.22 -35.21 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.11 Total: 5.74 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -0.03 Total: -11.05 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.05 Total: -34.65 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.38 Total: -7.70 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -2.15 Total: -7.69 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -25.98 -9.22 -35.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259735490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.955 kcal (2) G-P(sol) polarization free energy of solvation -25.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds