Wall clock time and date at job start Mon Mar 30 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99707 * 2 1 4 4 H 1.48502 * 109.47073 * 264.90712 * 3 2 1 5 5 H 1.48497 * 109.47232 * 24.90703 * 3 2 1 6 6 H 1.48501 * 109.46940 * 144.90921 * 3 2 1 7 7 C 1.37878 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99958 * 5.01313 * 7 2 1 9 9 C 1.50704 * 119.99814 * 185.00699 * 7 2 1 10 10 H 1.08998 * 107.97511 * 332.62893 * 9 7 2 11 11 C 1.45389 * 108.24415 * 89.59883 * 9 7 2 12 12 C 1.55288 * 109.85120 * 185.17762 * 11 9 7 13 13 S 1.79394 * 109.72690 * 288.76824 * 12 11 9 14 14 C 1.82421 * 106.81403 * 86.88747 * 13 12 11 15 15 C 1.54646 * 110.53817 * 319.26722 * 14 13 12 16 16 N 1.45582 * 108.47074 * 321.25818 * 15 14 13 17 17 C 1.46898 * 111.00306 * 227.98022 * 16 15 14 18 18 H 1.08996 * 109.52548 * 187.42625 * 17 16 15 19 19 C 1.53179 * 109.52173 * 307.55402 * 17 16 15 20 20 C 1.53178 * 109.11027 * 176.90549 * 19 17 16 21 21 C 1.53098 * 109.15599 * 303.15173 * 20 19 17 22 22 O 1.42908 * 109.48915 * 57.47531 * 21 20 19 23 23 C 1.42899 * 114.09648 * 298.88736 * 22 21 20 24 24 H 0.96991 * 119.99976 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.40962 * 305.29393 * 11 9 7 26 26 H 1.09002 * 109.40665 * 65.06285 * 11 9 7 27 27 H 1.09005 * 109.42576 * 48.84320 * 12 11 9 28 28 H 1.09003 * 109.43001 * 168.73860 * 12 11 9 29 29 H 1.08997 * 109.25788 * 79.53715 * 14 13 12 30 30 H 1.08994 * 109.26177 * 198.98785 * 14 13 12 31 31 H 1.09004 * 109.62952 * 201.56913 * 15 14 13 32 32 H 1.08995 * 109.64139 * 80.95622 * 15 14 13 33 33 H 1.09005 * 109.54313 * 296.81702 * 19 17 16 34 34 H 1.09003 * 109.54299 * 56.98881 * 19 17 16 35 35 H 1.08999 * 109.52351 * 62.96874 * 20 19 17 36 36 H 1.08996 * 109.52219 * 183.15971 * 20 19 17 37 37 H 1.09005 * 109.40748 * 297.49323 * 21 20 19 38 38 H 1.09000 * 109.48385 * 177.50702 * 21 20 19 39 39 H 1.09002 * 109.48238 * 301.17767 * 23 22 21 40 40 H 1.08997 * 109.48374 * 181.13848 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6042 1.9843 -1.3946 5 1 1.3969 2.6813 0.5896 6 1 3.4887 1.4737 0.8049 7 6 2.0046 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0808 9 6 3.5073 -1.1965 0.1144 10 1 3.8772 -0.2566 -0.2952 11 6 3.8568 -1.2472 1.5248 12 6 5.3954 -1.1196 1.6917 13 16 6.1927 -2.6234 1.1253 14 6 6.4614 -2.4345 -0.6691 15 6 5.2344 -1.7687 -1.3343 16 7 4.0291 -2.2941 -0.7094 17 6 3.0473 -2.7052 -1.7218 18 1 2.1094 -2.9696 -1.2335 19 6 2.8075 -1.5514 -2.7004 20 6 1.8423 -2.0152 -3.7956 21 6 2.4221 -3.2531 -4.4850 22 8 2.6498 -4.2768 -3.5142 23 6 3.5815 -3.9152 -2.4928 24 1 -0.4850 0.8400 -0.0004 25 1 3.3663 -0.4271 2.0492 26 1 3.5241 -2.1957 1.9465 27 1 5.7550 -0.2750 1.1039 28 1 5.6338 -0.9574 2.7429 29 1 7.3421 -1.8148 -0.8375 30 1 6.6230 -3.4164 -1.1138 31 1 5.2251 -1.9995 -2.3996 32 1 5.2806 -0.6892 -1.1908 33 1 2.3745 -0.7050 -2.1671 34 1 3.7541 -1.2527 -3.1510 35 1 0.8792 -2.2652 -3.3505 36 1 1.7106 -1.2176 -4.5267 37 1 3.3648 -2.9918 -4.9657 38 1 1.7189 -3.6140 -5.2357 39 1 4.5394 -3.6625 -2.9474 40 1 3.7136 -4.7530 -1.8081 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259735491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:37 Heat of formation + Delta-G solvation = -20.202923 kcal Electronic energy + Delta-G solvation = -20983.191340 eV Core-core repulsion = 18117.908416 eV Total energy + Delta-G solvation = -2865.282925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77075 -37.48484 -33.62863 -32.79426 -31.81786 -30.69383 -28.64436 -26.67291 -24.50628 -23.48705 -22.68070 -21.77561 -19.97239 -18.76616 -17.19050 -16.30331 -15.69746 -15.47933 -14.99007 -14.71121 -14.30035 -14.15821 -13.91763 -13.71087 -13.05737 -12.89404 -12.55146 -12.43084 -12.13434 -12.00348 -11.82449 -11.20505 -10.98271 -10.91521 -10.80135 -10.52672 -10.42525 -10.30590 -10.16905 -9.94787 -9.73532 -9.19242 -8.94114 -8.77909 -8.57329 -7.62346 -6.85456 -6.22734 -4.20662 2.27015 3.09745 3.20190 3.22807 3.24612 4.20702 4.23598 4.76467 5.08208 5.24441 5.29722 5.36362 5.45848 5.48950 5.54944 5.60993 5.63346 5.67091 5.79630 5.87910 5.94410 6.01975 6.07303 6.14330 6.18939 6.27335 6.43426 6.53132 6.64126 6.68034 6.86451 7.14700 7.15610 7.31651 7.46917 7.61744 7.77952 8.02441 8.44683 8.82444 9.36976 10.88832 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.012151 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.999429 B = 2303.874727 C = 3873.290814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.859 3.141 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.089 0.911 9 C 0.163 3.837 10 H 0.008 0.992 11 C -0.084 4.084 12 C -0.094 4.094 13 S -0.248 6.248 14 C -0.069 4.069 15 C 0.025 3.975 16 N -0.484 5.484 17 C 0.066 3.934 18 H 0.116 0.884 19 C -0.150 4.150 20 C -0.148 4.148 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.067 3.933 24 H 0.265 0.735 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.326 -2.273 -4.660 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.686 3.314 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.106 0.894 9 C 0.056 3.944 10 H 0.025 0.975 11 C -0.124 4.124 12 C -0.243 4.243 13 S -0.022 6.022 14 C -0.218 4.218 15 C -0.106 4.106 16 N -0.207 5.207 17 C -0.042 4.042 18 H 0.134 0.866 19 C -0.189 4.189 20 C -0.186 4.186 21 C -0.015 4.015 22 O -0.302 6.302 23 C -0.010 4.010 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.445 -3.626 -3.745 10.788 hybrid contribution -0.013 3.300 -1.323 3.555 sum 9.432 -0.326 -5.069 10.713 Atomic orbital electron populations 1.69876 1.06018 1.26945 1.49797 1.24950 0.94614 0.98255 0.94711 0.87163 0.80610 0.84806 0.78779 1.20334 1.21280 1.18858 1.21246 0.88880 0.94920 1.50860 0.89355 1.18590 0.96615 0.87949 0.91284 0.97496 1.20969 0.89829 1.02646 0.98980 1.23749 1.01257 0.96584 1.02719 1.85532 1.77560 1.31133 1.07974 1.23959 0.99461 1.04039 0.94386 1.22867 0.92141 0.97362 0.98206 1.63321 1.03438 1.35966 1.17949 1.22308 0.97931 0.92909 0.91072 0.86638 1.22412 0.97852 1.01824 0.96763 1.22097 1.00940 0.97113 0.98489 1.22543 0.99084 0.89063 0.90793 1.87894 1.64557 1.39086 1.38709 1.22689 0.90337 0.98823 0.89186 0.92506 0.91638 0.90597 0.91515 0.89181 0.91365 0.88816 0.91350 0.93334 0.88248 0.94171 0.90597 0.92146 0.94249 0.89725 0.94514 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.96 55.43 0.77 -24.33 16 2 C 0.08 2.03 4.81 -17.82 -0.09 1.94 16 3 Si 0.86 19.94 25.90 -169.99 -4.40 15.53 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -5.85 6.39 56.52 0.36 -5.49 16 7 C -0.52 -12.92 5.61 -34.44 -0.19 -13.12 16 8 H 0.09 2.45 6.05 -52.49 -0.32 2.13 16 9 C 0.16 3.46 0.74 -72.49 -0.05 3.41 16 10 H 0.01 0.17 3.63 -51.93 -0.19 -0.02 16 11 C -0.08 -1.70 4.68 -29.10 -0.14 -1.84 16 12 C -0.09 -1.63 5.97 38.37 0.23 -1.40 16 13 S -0.25 -4.15 21.11 -107.50 -2.27 -6.42 16 14 C -0.07 -1.02 6.84 38.02 0.26 -0.76 16 15 C 0.03 0.42 4.07 -3.67 -0.01 0.40 16 16 N -0.48 -9.18 3.90 -224.36 -0.87 -10.06 16 17 C 0.07 1.27 1.93 -67.57 -0.13 1.14 16 18 H 0.12 2.61 5.52 -51.93 -0.29 2.33 16 19 C -0.15 -2.84 4.47 -26.55 -0.12 -2.95 16 20 C -0.15 -2.51 6.14 -26.59 -0.16 -2.67 16 21 C 0.06 0.93 6.84 37.21 0.25 1.18 16 22 O -0.38 -6.66 10.77 -35.23 -0.38 -7.04 16 23 C 0.07 1.12 6.14 37.21 0.23 1.35 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.07 1.38 7.06 -51.93 -0.37 1.01 16 26 H 0.08 1.61 8.12 -51.93 -0.42 1.18 16 27 H 0.07 1.14 7.97 -51.78 -0.41 0.73 16 28 H 0.09 1.40 8.14 -51.77 -0.42 0.98 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.05 4.81 -51.93 -0.25 0.80 16 32 H 0.05 0.86 6.41 -51.93 -0.33 0.53 16 33 H 0.10 2.23 5.10 -51.93 -0.26 1.97 16 34 H 0.04 0.70 6.19 -51.93 -0.32 0.38 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.57 6.55 -51.93 -0.34 0.23 16 40 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -26.54 295.35 -8.69 -35.22 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.06 Total: 5.97 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: -0.10 Total: -34.39 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.38 Total: -7.04 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.40 Total: 15.53 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.27 Total: -6.42 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.54 -8.69 -35.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259735491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.022 kcal (2) G-P(sol) polarization free energy of solvation -26.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds