Wall clock time and date at job start Mon Mar 30 2020 05:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99707 * 2 1 4 4 H 1.48502 * 109.47073 * 264.90712 * 3 2 1 5 5 H 1.48497 * 109.47232 * 24.90703 * 3 2 1 6 6 H 1.48501 * 109.46940 * 144.90921 * 3 2 1 7 7 C 1.37878 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99958 * 5.01313 * 7 2 1 9 9 C 1.50704 * 119.99814 * 185.00699 * 7 2 1 10 10 H 1.08998 * 107.97511 * 332.62893 * 9 7 2 11 11 C 1.45389 * 108.24415 * 89.59883 * 9 7 2 12 12 C 1.55288 * 109.85120 * 185.17762 * 11 9 7 13 13 S 1.79394 * 109.72690 * 288.76824 * 12 11 9 14 14 C 1.82421 * 106.81403 * 86.88747 * 13 12 11 15 15 C 1.54646 * 110.53817 * 319.26722 * 14 13 12 16 16 N 1.45582 * 108.47074 * 321.25818 * 15 14 13 17 17 C 1.46898 * 111.00306 * 227.98022 * 16 15 14 18 18 H 1.08996 * 109.52548 * 187.42625 * 17 16 15 19 19 C 1.53179 * 109.52173 * 307.55402 * 17 16 15 20 20 C 1.53178 * 109.11027 * 176.90549 * 19 17 16 21 21 C 1.53098 * 109.15599 * 303.15173 * 20 19 17 22 22 O 1.42908 * 109.48915 * 57.47531 * 21 20 19 23 23 C 1.42899 * 114.09648 * 298.88736 * 22 21 20 24 24 H 0.96991 * 119.99976 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.40962 * 305.29393 * 11 9 7 26 26 H 1.09002 * 109.40665 * 65.06285 * 11 9 7 27 27 H 1.09005 * 109.42576 * 48.84320 * 12 11 9 28 28 H 1.09003 * 109.43001 * 168.73860 * 12 11 9 29 29 H 1.08997 * 109.25788 * 79.53715 * 14 13 12 30 30 H 1.08994 * 109.26177 * 198.98785 * 14 13 12 31 31 H 1.09004 * 109.62952 * 201.56913 * 15 14 13 32 32 H 1.08995 * 109.64139 * 80.95622 * 15 14 13 33 33 H 1.09005 * 109.54313 * 296.81702 * 19 17 16 34 34 H 1.09003 * 109.54299 * 56.98881 * 19 17 16 35 35 H 1.08999 * 109.52351 * 62.96874 * 20 19 17 36 36 H 1.08996 * 109.52219 * 183.15971 * 20 19 17 37 37 H 1.09005 * 109.40748 * 297.49323 * 21 20 19 38 38 H 1.09000 * 109.48385 * 177.50702 * 21 20 19 39 39 H 1.09002 * 109.48238 * 301.17767 * 23 22 21 40 40 H 1.08997 * 109.48374 * 181.13848 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6042 1.9843 -1.3946 5 1 1.3969 2.6813 0.5896 6 1 3.4887 1.4737 0.8049 7 6 2.0046 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0808 9 6 3.5073 -1.1965 0.1144 10 1 3.8772 -0.2566 -0.2952 11 6 3.8568 -1.2472 1.5248 12 6 5.3954 -1.1196 1.6917 13 16 6.1927 -2.6234 1.1253 14 6 6.4614 -2.4345 -0.6691 15 6 5.2344 -1.7687 -1.3343 16 7 4.0291 -2.2941 -0.7094 17 6 3.0473 -2.7052 -1.7218 18 1 2.1094 -2.9696 -1.2335 19 6 2.8075 -1.5514 -2.7004 20 6 1.8423 -2.0152 -3.7956 21 6 2.4221 -3.2531 -4.4850 22 8 2.6498 -4.2768 -3.5142 23 6 3.5815 -3.9152 -2.4928 24 1 -0.4850 0.8400 -0.0004 25 1 3.3663 -0.4271 2.0492 26 1 3.5241 -2.1957 1.9465 27 1 5.7550 -0.2750 1.1039 28 1 5.6338 -0.9574 2.7429 29 1 7.3421 -1.8148 -0.8375 30 1 6.6230 -3.4164 -1.1138 31 1 5.2251 -1.9995 -2.3996 32 1 5.2806 -0.6892 -1.1908 33 1 2.3745 -0.7050 -2.1671 34 1 3.7541 -1.2527 -3.1510 35 1 0.8792 -2.2652 -3.3505 36 1 1.7106 -1.2176 -4.5267 37 1 3.3648 -2.9918 -4.9657 38 1 1.7189 -3.6140 -5.2357 39 1 4.5394 -3.6625 -2.9474 40 1 3.7136 -4.7530 -1.8081 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259735491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:36 Heat of formation + Delta-G solvation = -37.564399 kcal Electronic energy + Delta-G solvation = -20983.944191 eV Core-core repulsion = 18117.908416 eV Total energy + Delta-G solvation = -2866.035775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26962 -38.93457 -35.26376 -34.46279 -33.42658 -32.06358 -30.15557 -28.29280 -25.89285 -25.11182 -24.14282 -23.18542 -21.56542 -20.33466 -19.01567 -17.79910 -17.11165 -16.80637 -16.52246 -16.25812 -15.96885 -15.54801 -15.35743 -15.06142 -14.74097 -14.37310 -14.16338 -13.91039 -13.72578 -13.39034 -13.18254 -12.92198 -12.60083 -12.47180 -12.32529 -12.05328 -11.92588 -11.81487 -11.72866 -11.48549 -11.33053 -10.78186 -10.65584 -10.47990 -10.16389 -9.14654 -8.27964 -8.19122 -6.27453 0.99481 1.23073 1.28568 1.35059 1.96048 2.27481 2.87017 3.08344 3.35105 3.92824 3.93647 4.04204 4.05393 4.11776 4.14152 4.22520 4.28279 4.36438 4.51218 4.54575 4.63120 4.66481 4.72423 4.75058 4.79916 4.92951 5.00497 5.00932 5.05749 5.21380 5.24579 5.41440 5.53739 5.63778 5.80026 6.00192 6.22140 6.40822 6.64199 6.76532 7.33073 8.87354 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.012151 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.999429 B = 2303.874727 C = 3873.290814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.029 3.971 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.502 4.502 8 H 0.046 0.954 9 C 0.173 3.827 10 H 0.005 0.995 11 C -0.086 4.086 12 C -0.085 4.085 13 S -0.265 6.265 14 C -0.060 4.060 15 C 0.023 3.977 16 N -0.486 5.486 17 C 0.070 3.930 18 H 0.067 0.933 19 C -0.147 4.147 20 C -0.147 4.147 21 C 0.064 3.936 22 O -0.401 6.401 23 C 0.077 3.923 24 H 0.262 0.738 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.662 -2.182 -6.110 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.169 4.169 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.220 1.220 6 H -0.167 1.167 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.065 3.935 10 H 0.023 0.977 11 C -0.126 4.126 12 C -0.234 4.234 13 S -0.039 6.039 14 C -0.209 4.209 15 C -0.108 4.108 16 N -0.209 5.209 17 C -0.039 4.039 18 H 0.085 0.915 19 C -0.186 4.186 20 C -0.185 4.185 21 C -0.012 4.012 22 O -0.319 6.319 23 C 0.000 4.000 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.082 0.918 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.815 -3.551 -5.197 14.277 hybrid contribution -1.099 3.174 -0.903 3.478 sum 11.716 -0.377 -6.100 13.214 Atomic orbital electron populations 1.70028 1.07893 1.27502 1.52683 1.25586 0.95039 1.01485 0.94838 0.86287 0.80058 0.80706 0.79203 1.19683 1.21967 1.16651 1.21349 0.91031 0.93027 1.48648 0.93631 1.18505 0.93791 0.88779 0.92423 0.97709 1.20846 0.92708 1.01251 0.97825 1.23605 0.98229 0.97248 1.04293 1.85652 1.76990 1.31033 1.10184 1.24017 0.99248 1.05415 0.92239 1.22924 0.91370 0.97117 0.99354 1.63337 1.04204 1.35055 1.18281 1.22134 0.96291 0.94347 0.91087 0.91536 1.22295 0.99008 1.00229 0.97020 1.22077 0.99014 0.99047 0.98362 1.22693 1.00820 0.87387 0.90327 1.87885 1.64885 1.39988 1.39116 1.22580 0.91064 0.97297 0.89075 0.92845 0.92923 0.92309 0.90809 0.87357 0.88616 0.87131 0.89468 0.93975 0.92282 0.91812 0.93960 0.90359 0.91537 0.87513 0.91816 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.04 13.96 21.45 0.30 -55.74 16 2 C 0.03 1.55 4.81 84.65 0.41 1.96 16 3 Si 0.91 41.55 25.90 68.60 1.78 43.33 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.24 -10.14 6.39 99.48 0.64 -9.51 16 7 C -0.50 -26.09 5.61 25.60 0.14 -25.94 16 8 H 0.05 2.74 6.05 -2.91 -0.02 2.72 16 9 C 0.17 7.33 0.74 41.86 0.03 7.36 16 10 H 0.01 0.23 3.63 -2.39 -0.01 0.22 16 11 C -0.09 -3.45 4.68 29.06 0.14 -3.32 16 12 C -0.09 -2.75 5.97 72.77 0.43 -2.31 16 13 S -0.26 -8.12 21.11 -56.49 -1.19 -9.31 16 14 C -0.06 -1.53 6.84 72.54 0.50 -1.03 16 15 C 0.02 0.68 4.07 87.11 0.35 1.03 16 16 N -0.49 -17.95 3.90 -863.76 -3.37 -21.32 16 17 C 0.07 2.69 1.93 45.01 0.09 2.78 16 18 H 0.07 3.21 5.52 -2.39 -0.01 3.20 16 19 C -0.15 -5.47 4.47 30.71 0.14 -5.33 16 20 C -0.15 -4.89 6.14 30.69 0.19 -4.70 16 21 C 0.06 1.75 6.84 72.01 0.49 2.24 16 22 O -0.40 -13.14 10.77 -148.98 -1.60 -14.74 16 23 C 0.08 2.42 6.14 72.01 0.44 2.86 16 24 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 25 H 0.05 2.22 7.06 -2.39 -0.02 2.20 16 26 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 27 H 0.07 2.29 7.97 -2.48 -0.02 2.27 16 28 H 0.11 3.09 8.14 -2.49 -0.02 3.07 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.09 2.28 4.81 -2.38 -0.01 2.27 16 32 H 0.04 1.34 6.41 -2.39 -0.02 1.32 16 33 H 0.06 2.69 5.10 -2.38 -0.01 2.68 16 34 H 0.06 2.05 6.19 -2.39 -0.01 2.03 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.06 1.69 6.55 -2.39 -0.02 1.67 16 40 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -60.58 295.35 0.22 -60.36 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.96 Total: 21.83 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 3.35 Total: -24.40 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -3.07 Total: -77.06 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.60 Total: -14.74 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.78 Total: 43.33 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.19 Total: -9.31 kcal Total: -60.58 0.22 -60.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259735491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.795 kcal (2) G-P(sol) polarization free energy of solvation -60.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds