Wall clock time and date at job start Mon Mar 30 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00324 * 2 1 4 4 H 1.48500 * 109.47116 * 270.00229 * 3 2 1 5 5 H 1.48503 * 109.46775 * 30.00541 * 3 2 1 6 6 H 1.48505 * 109.47049 * 150.00244 * 3 2 1 7 7 C 1.37886 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47162 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.30922 * 57.20810 * 10 9 7 12 12 C 1.53096 * 109.39255 * 297.45594 * 10 9 7 13 13 S 1.81753 * 108.83655 * 302.87802 * 12 10 9 14 14 O 1.42096 * 109.47081 * 62.72798 * 13 12 10 15 15 C 1.81742 * 102.22036 * 306.72673 * 13 12 10 16 16 C 1.53095 * 108.83727 * 53.27078 * 15 13 12 17 17 C 1.52578 * 109.95972 * 296.97124 * 16 15 13 18 18 H 1.09010 * 109.19007 * 310.37851 * 17 16 15 19 19 N 1.46897 * 109.23190 * 190.99980 * 17 16 15 20 20 C 1.48533 * 111.00082 * 58.18238 * 19 17 16 21 21 C 1.54943 * 103.22792 * 159.72335 * 20 19 17 22 22 C 1.54598 * 102.91880 * 322.58979 * 21 20 19 23 23 C 1.47897 * 111.00218 * 175.58260 * 19 17 16 24 24 H 0.97001 * 119.99640 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47399 * 59.99713 * 9 7 2 26 26 H 1.09005 * 109.47097 * 299.99114 * 9 7 2 27 27 H 1.09003 * 109.57651 * 62.68041 * 12 10 9 28 28 H 1.08995 * 109.58047 * 183.06739 * 12 10 9 29 29 H 1.08999 * 109.57733 * 293.46158 * 15 13 12 30 30 H 1.09004 * 109.57150 * 173.07215 * 15 13 12 31 31 H 1.09003 * 109.39124 * 176.82295 * 16 15 13 32 32 H 1.08999 * 109.31354 * 57.07546 * 16 15 13 33 33 H 1.09003 * 110.66745 * 278.16184 * 20 19 17 34 34 H 1.09002 * 110.66545 * 41.29053 * 20 19 17 35 35 H 1.08998 * 110.71928 * 204.22831 * 21 20 19 36 36 H 1.09004 * 110.71957 * 80.94733 * 21 20 19 37 37 H 1.09004 * 110.30651 * 263.03649 * 22 21 20 38 38 H 1.09003 * 110.30729 * 140.87563 * 22 21 20 39 39 H 1.08999 * 109.91913 * 333.50840 * 23 19 17 40 40 H 1.09001 * 109.92077 * 94.80336 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 1 2.9029 -3.5749 0.8621 12 6 3.0816 -3.6147 -1.2841 13 16 1.9641 -3.6663 -2.7166 14 8 1.1292 -2.5165 -2.7076 15 6 0.9640 -5.1440 -2.3713 16 6 0.3660 -5.0193 -0.9675 17 6 1.4819 -4.9812 0.0724 18 1 2.1710 -5.8057 -0.1111 19 7 0.8991 -5.1272 1.4129 20 6 0.1336 -6.3950 1.5253 21 6 0.0615 -6.6313 3.0550 22 6 1.4477 -6.1526 3.5443 23 6 1.9558 -5.2014 2.4450 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 3.6625 -2.6927 -1.3072 28 1 3.7533 -4.4726 -1.3139 29 1 1.5944 -6.0317 -2.4223 30 1 0.1613 -5.2212 -3.1047 31 1 -0.2812 -5.8744 -0.7726 32 1 -0.2185 -4.1014 -0.9049 33 1 -0.8661 -6.2793 1.1064 34 1 0.6654 -7.2103 1.0348 35 1 -0.0813 -7.6891 3.2755 36 1 -0.7329 -6.0325 3.5007 37 1 2.1239 -7.0005 3.6533 38 1 1.3517 -5.6202 4.4907 39 1 2.8740 -5.5948 2.0089 40 1 2.1353 -4.2114 2.8646 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259772821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:39 Heat of formation + Delta-G solvation = -25.904481 kcal Electronic energy + Delta-G solvation = -20443.962343 eV Core-core repulsion = 17578.432180 eV Total energy + Delta-G solvation = -2865.530163 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33457 -36.25929 -34.68401 -32.79603 -31.23172 -30.54069 -28.62132 -26.89354 -25.36849 -23.18657 -22.17196 -20.93301 -20.32648 -18.28002 -17.11603 -16.24709 -15.93499 -15.67177 -14.73617 -14.47443 -14.05734 -13.84967 -13.63045 -13.30886 -13.04287 -12.61315 -12.30423 -12.09305 -11.96402 -11.78895 -11.39369 -11.20353 -11.13234 -10.86408 -10.82239 -10.66861 -10.57061 -10.43598 -10.22895 -10.17729 -9.75983 -9.12514 -8.87695 -8.63229 -8.07557 -7.94204 -7.31329 -5.70993 -3.69627 2.39478 3.28190 3.45112 3.50292 3.51580 4.21298 4.65584 4.66186 4.82618 4.84563 5.07465 5.28434 5.41278 5.42994 5.46070 5.64495 5.66469 5.70655 5.79154 5.82956 5.89462 5.92767 5.97787 5.99547 6.11012 6.19513 6.25248 6.34639 6.38845 6.66096 6.71109 6.83101 7.19585 7.29000 7.53115 7.98518 8.19330 8.34502 8.69085 9.35601 9.90163 11.41285 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.007853 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.435413 B = 3564.601402 C = 4590.220851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.506 4.506 8 H 0.045 0.955 9 C 0.003 3.997 10 C -0.071 4.071 11 H 0.059 0.941 12 C -0.423 4.423 13 S 1.221 4.779 14 O -0.797 6.797 15 C -0.449 4.449 16 C -0.115 4.115 17 C 0.080 3.920 18 H 0.029 0.971 19 N -0.499 5.499 20 C 0.034 3.966 21 C -0.123 4.123 22 C -0.130 4.130 23 C 0.039 3.961 24 H 0.254 0.746 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -16.612 -1.948 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.063 0.937 9 C -0.033 4.033 10 C -0.091 4.091 11 H 0.077 0.923 12 C -0.560 4.560 13 S 1.416 4.584 14 O -0.792 6.792 15 C -0.584 4.584 16 C -0.153 4.153 17 C -0.028 4.028 18 H 0.047 0.953 19 N -0.223 5.223 20 C -0.094 4.094 21 C -0.161 4.161 22 C -0.168 4.168 23 C -0.089 4.089 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.132 0.868 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.645 -15.414 -2.636 16.313 hybrid contribution 0.039 0.375 1.857 1.895 sum 4.684 -15.039 -0.779 15.771 Atomic orbital electron populations 1.69972 1.05883 1.25678 1.51118 1.24886 0.94620 0.98509 0.95706 0.86807 0.79797 0.84711 0.77852 1.20873 1.21499 1.20291 1.21041 0.92031 0.91287 1.50046 0.93678 1.19660 0.94033 0.89694 0.99962 1.21101 0.97297 0.95111 0.95567 0.92284 1.27491 1.09425 1.06602 1.12496 1.69958 0.97654 0.87012 1.03778 1.93354 1.65552 1.40612 1.79662 1.27751 1.11045 1.17617 1.02009 1.21529 0.98229 1.03983 0.91565 1.21905 0.94672 0.97753 0.88485 0.95315 1.64686 1.21638 1.32588 1.03392 1.23231 0.99271 0.90999 0.95929 1.22466 0.97701 1.00383 0.95533 1.22405 0.96662 0.98701 0.99074 1.22821 0.93322 1.00179 0.92546 0.93591 0.92300 0.95691 0.86764 0.89258 0.88033 0.88295 0.92549 0.89038 0.90270 0.94440 0.91612 0.90750 0.92054 0.91185 0.94248 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -29.09 13.29 55.43 0.74 -28.35 16 2 C 0.06 1.98 5.46 -17.82 -0.10 1.88 16 3 Si 0.88 23.33 29.54 -169.99 -5.02 18.31 16 4 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.51 -15.10 8.30 -34.44 -0.29 -15.38 16 8 H 0.05 1.30 6.89 -52.49 -0.36 0.94 16 9 C 0.00 0.09 3.19 -27.89 -0.09 0.00 16 10 C -0.07 -1.48 2.05 -90.78 -0.19 -1.67 16 11 H 0.06 1.27 6.81 -51.93 -0.35 0.92 16 12 C -0.42 -7.27 5.71 37.21 0.21 -7.05 16 13 S 1.22 19.37 13.55 -107.50 -1.46 17.91 16 14 O -0.80 -19.44 14.95 -35.23 -0.53 -19.97 16 15 C -0.45 -6.29 6.44 37.21 0.24 -6.05 16 16 C -0.12 -2.02 4.90 -26.90 -0.13 -2.16 16 17 C 0.08 1.42 1.10 -68.14 -0.07 1.34 16 18 H 0.03 0.46 7.90 -51.92 -0.41 0.04 16 19 N -0.50 -8.81 4.74 -223.01 -1.06 -9.87 16 20 C 0.03 0.48 5.34 -1.89 -0.01 0.47 16 21 C -0.12 -1.52 7.06 -24.87 -0.18 -1.70 16 22 C -0.13 -1.64 6.93 -25.37 -0.18 -1.82 16 23 C 0.04 0.62 5.37 -2.76 -0.01 0.61 16 24 H 0.25 7.93 8.31 -40.82 -0.34 7.59 16 25 H 0.06 1.72 3.20 -51.93 -0.17 1.55 16 26 H 0.02 0.76 7.85 -51.93 -0.41 0.35 16 27 H 0.11 2.18 6.87 -51.93 -0.36 1.82 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 32 H 0.09 2.05 5.85 -51.93 -0.30 1.75 16 33 H 0.08 1.15 7.38 -51.93 -0.38 0.76 16 34 H 0.04 0.49 8.01 -51.93 -0.42 0.08 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 40 H 0.08 1.46 7.97 -51.93 -0.41 1.05 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -38.61 307.21 -9.88 -48.49 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.39 Total: 0.37 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: -0.79 Total: -31.52 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.32 Total: -38.22 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.53 Total: -19.97 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.31 kcal Atomic # 16 Polarization: 19.37 SS G_CDS: -1.46 Total: 17.91 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -38.61 -9.88 -48.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.584 kcal (2) G-P(sol) polarization free energy of solvation -38.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds