Wall clock time and date at job start Mon Mar 30 2020 05:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00324 * 2 1 4 4 H 1.48500 * 109.47116 * 270.00229 * 3 2 1 5 5 H 1.48503 * 109.46775 * 30.00541 * 3 2 1 6 6 H 1.48505 * 109.47049 * 150.00244 * 3 2 1 7 7 C 1.37886 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47162 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.30922 * 57.20810 * 10 9 7 12 12 C 1.53096 * 109.39255 * 297.45594 * 10 9 7 13 13 S 1.81753 * 108.83655 * 302.87802 * 12 10 9 14 14 O 1.42096 * 109.47081 * 62.72798 * 13 12 10 15 15 C 1.81742 * 102.22036 * 306.72673 * 13 12 10 16 16 C 1.53095 * 108.83727 * 53.27078 * 15 13 12 17 17 C 1.52578 * 109.95972 * 296.97124 * 16 15 13 18 18 H 1.09010 * 109.19007 * 310.37851 * 17 16 15 19 19 N 1.46897 * 109.23190 * 190.99980 * 17 16 15 20 20 C 1.48533 * 111.00082 * 58.18238 * 19 17 16 21 21 C 1.54943 * 103.22792 * 159.72335 * 20 19 17 22 22 C 1.54598 * 102.91880 * 322.58979 * 21 20 19 23 23 C 1.47897 * 111.00218 * 175.58260 * 19 17 16 24 24 H 0.97001 * 119.99640 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47399 * 59.99713 * 9 7 2 26 26 H 1.09005 * 109.47097 * 299.99114 * 9 7 2 27 27 H 1.09003 * 109.57651 * 62.68041 * 12 10 9 28 28 H 1.08995 * 109.58047 * 183.06739 * 12 10 9 29 29 H 1.08999 * 109.57733 * 293.46158 * 15 13 12 30 30 H 1.09004 * 109.57150 * 173.07215 * 15 13 12 31 31 H 1.09003 * 109.39124 * 176.82295 * 16 15 13 32 32 H 1.08999 * 109.31354 * 57.07546 * 16 15 13 33 33 H 1.09003 * 110.66745 * 278.16184 * 20 19 17 34 34 H 1.09002 * 110.66545 * 41.29053 * 20 19 17 35 35 H 1.08998 * 110.71928 * 204.22831 * 21 20 19 36 36 H 1.09004 * 110.71957 * 80.94733 * 21 20 19 37 37 H 1.09004 * 110.30651 * 263.03649 * 22 21 20 38 38 H 1.09003 * 110.30729 * 140.87563 * 22 21 20 39 39 H 1.08999 * 109.91913 * 333.50840 * 23 19 17 40 40 H 1.09001 * 109.92077 * 94.80336 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 1 2.9029 -3.5749 0.8621 12 6 3.0816 -3.6147 -1.2841 13 16 1.9641 -3.6663 -2.7166 14 8 1.1292 -2.5165 -2.7076 15 6 0.9640 -5.1440 -2.3713 16 6 0.3660 -5.0193 -0.9675 17 6 1.4819 -4.9812 0.0724 18 1 2.1710 -5.8057 -0.1111 19 7 0.8991 -5.1272 1.4129 20 6 0.1336 -6.3950 1.5253 21 6 0.0615 -6.6313 3.0550 22 6 1.4477 -6.1526 3.5443 23 6 1.9558 -5.2014 2.4450 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 3.6625 -2.6927 -1.3072 28 1 3.7533 -4.4726 -1.3139 29 1 1.5944 -6.0317 -2.4223 30 1 0.1613 -5.2212 -3.1047 31 1 -0.2812 -5.8744 -0.7726 32 1 -0.2185 -4.1014 -0.9049 33 1 -0.8661 -6.2793 1.1064 34 1 0.6654 -7.2103 1.0348 35 1 -0.0813 -7.6891 3.2755 36 1 -0.7329 -6.0325 3.5007 37 1 2.1239 -7.0005 3.6533 38 1 1.3517 -5.6202 4.4907 39 1 2.8740 -5.5948 2.0089 40 1 2.1353 -4.2114 2.8646 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259772821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:38 Heat of formation + Delta-G solvation = -55.965435 kcal Electronic energy + Delta-G solvation = -20445.265884 eV Core-core repulsion = 17578.432180 eV Total energy + Delta-G solvation = -2866.833704 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65324 -37.69193 -36.29881 -34.86827 -32.96390 -31.74174 -29.76988 -28.91379 -26.74929 -25.05557 -23.66770 -22.26032 -21.42329 -19.84634 -18.90354 -17.89486 -17.44821 -16.81701 -16.55790 -16.24054 -15.61001 -15.27925 -14.92610 -14.65179 -14.40931 -14.11228 -13.76231 -13.74886 -13.39112 -13.28930 -13.01154 -12.89984 -12.57937 -12.54443 -12.25394 -12.19847 -12.05799 -11.91317 -11.77993 -11.64416 -11.43594 -10.97825 -10.86949 -10.46137 -10.27993 -9.18893 -8.80721 -8.09457 -6.15299 1.10571 1.28907 1.33473 1.41546 1.99639 2.41096 2.99480 3.25068 3.34804 3.69073 3.73792 3.91293 4.07716 4.09916 4.17961 4.27030 4.35573 4.47187 4.53795 4.60814 4.67798 4.75190 4.83720 4.91589 4.97724 5.03347 5.07714 5.08458 5.17378 5.22802 5.31615 5.33039 5.41907 5.60120 5.92639 6.09550 6.12701 6.27439 6.35576 7.05413 7.49223 9.03711 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.007853 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.435413 B = 3564.601402 C = 4590.220851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.006 4.006 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.514 4.514 8 H 0.051 0.949 9 C 0.014 3.986 10 C -0.069 4.069 11 H 0.046 0.954 12 C -0.425 4.425 13 S 1.279 4.721 14 O -0.894 6.894 15 C -0.435 4.435 16 C -0.116 4.116 17 C 0.086 3.914 18 H 0.071 0.929 19 N -0.542 5.542 20 C 0.034 3.966 21 C -0.118 4.118 22 C -0.123 4.123 23 C 0.038 3.962 24 H 0.253 0.747 25 H 0.041 0.959 26 H -0.028 1.028 27 H 0.092 0.908 28 H 0.150 0.850 29 H 0.160 0.840 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.511 -19.897 -2.421 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.553 4.553 8 H 0.069 0.931 9 C -0.023 4.023 10 C -0.089 4.089 11 H 0.064 0.936 12 C -0.562 4.562 13 S 1.477 4.523 14 O -0.889 6.889 15 C -0.573 4.573 16 C -0.154 4.154 17 C -0.022 4.022 18 H 0.089 0.911 19 N -0.266 5.266 20 C -0.093 4.093 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.090 4.090 24 H 0.061 0.939 25 H 0.059 0.941 26 H -0.010 1.010 27 H 0.111 0.889 28 H 0.168 0.832 29 H 0.178 0.822 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.981 -18.686 -3.111 20.189 hybrid contribution -0.722 1.284 2.047 2.522 sum 6.259 -17.402 -1.064 18.524 Atomic orbital electron populations 1.70164 1.07920 1.26473 1.53002 1.25903 0.95577 1.03031 0.95669 0.85667 0.78944 0.79587 0.78159 1.20278 1.21042 1.18348 1.21558 0.92489 0.92793 1.48433 0.93118 1.19429 0.94585 0.91819 0.96480 1.20961 0.96230 0.94564 0.97125 0.93572 1.27544 1.09928 1.08376 1.10392 1.68767 0.96195 0.85349 1.01959 1.93206 1.68389 1.45716 1.81609 1.27676 1.11854 1.17817 0.99915 1.21491 0.98322 1.01713 0.93896 1.21814 0.94901 0.96707 0.88821 0.91143 1.64567 1.22951 1.35355 1.03774 1.23276 0.98481 0.90108 0.97453 1.22472 0.97019 1.02066 0.94076 1.22386 0.97220 0.98814 0.97684 1.22776 0.93784 0.99161 0.93249 0.93860 0.94139 1.00970 0.88914 0.83164 0.82175 0.86963 0.90396 0.95288 0.91328 0.91920 0.88346 0.92368 0.89151 0.91370 0.92813 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -64.89 13.29 21.45 0.28 -64.60 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.95 49.61 29.54 68.60 2.03 51.64 16 4 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 5 H -0.28 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.51 -32.11 8.30 25.60 0.21 -31.89 16 8 H 0.05 3.01 6.89 -2.91 -0.02 2.99 16 9 C 0.01 0.80 3.19 29.85 0.10 0.90 16 10 C -0.07 -2.88 2.05 -10.90 -0.02 -2.91 16 11 H 0.05 2.01 6.81 -2.38 -0.02 1.99 16 12 C -0.42 -13.76 5.71 72.01 0.41 -13.35 16 13 S 1.28 39.03 13.55 -56.49 -0.77 38.27 16 14 O -0.89 -45.55 14.95 -148.98 -2.23 -47.78 16 15 C -0.43 -10.62 6.44 72.01 0.46 -10.16 16 16 C -0.12 -3.93 4.90 30.49 0.15 -3.78 16 17 C 0.09 2.88 1.10 44.64 0.05 2.92 16 18 H 0.07 1.82 7.90 -2.38 -0.02 1.80 16 19 N -0.54 -18.86 4.74 -859.47 -4.07 -22.94 16 20 C 0.03 0.89 5.34 86.65 0.46 1.36 16 21 C -0.12 -2.66 7.06 31.80 0.22 -2.43 16 22 C -0.12 -2.82 6.93 31.47 0.22 -2.60 16 23 C 0.04 1.17 5.37 86.45 0.46 1.64 16 24 H 0.25 16.65 8.31 -92.71 -0.77 15.88 16 25 H 0.04 2.54 3.20 -2.39 -0.01 2.53 16 26 H -0.03 -1.88 7.85 -2.38 -0.02 -1.89 16 27 H 0.09 3.46 6.87 -2.39 -0.02 3.45 16 28 H 0.15 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.16 2.18 8.14 -2.39 -0.02 2.17 16 30 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.08 2.28 6.30 -2.39 -0.02 2.27 16 32 H 0.03 1.35 5.85 -2.39 -0.01 1.34 16 33 H 0.07 1.91 7.38 -2.39 -0.02 1.89 16 34 H 0.06 1.35 8.01 -2.39 -0.02 1.33 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.46 7.65 -2.39 -0.02 1.44 16 40 H 0.04 1.65 7.97 -2.39 -0.02 1.63 16 Total: -1.00 -93.70 307.21 -0.55 -94.25 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.01 Total: 11.38 kcal Atomic # 6 Polarization: -63.41 SS G_CDS: 3.19 Total: -60.22 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -3.79 Total: -87.54 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -2.23 Total: -47.78 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.03 Total: 51.64 kcal Atomic # 16 Polarization: 39.03 SS G_CDS: -0.77 Total: 38.27 kcal Total: -93.70 -0.55 -94.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.285 kcal (2) G-P(sol) polarization free energy of solvation -93.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds