Wall clock time and date at job start Mon Mar 30 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48504 * 109.47080 * 270.00029 * 3 2 1 5 5 H 1.48500 * 109.47189 * 30.00479 * 3 2 1 6 6 H 1.48505 * 109.47153 * 150.00618 * 3 2 1 7 7 C 1.37886 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99452 * 359.71606 * 7 2 1 9 9 C 1.50694 * 120.00288 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47141 * 179.71959 * 9 7 2 11 11 H 1.08998 * 109.38711 * 54.49325 * 10 9 7 12 12 C 1.53091 * 109.39257 * 294.78533 * 10 9 7 13 13 S 1.81747 * 108.84236 * 176.82672 * 12 10 9 14 14 O 1.42098 * 109.46925 * 297.27129 * 13 12 10 15 15 C 1.81750 * 102.22076 * 53.26365 * 13 12 10 16 16 C 1.53096 * 108.84237 * 306.73859 * 15 13 12 17 17 C 1.52580 * 109.95573 * 63.02242 * 16 15 13 18 18 H 1.09000 * 109.22505 * 49.64604 * 17 16 15 19 19 N 1.46902 * 109.18772 * 169.02724 * 17 16 15 20 20 C 1.48530 * 111.00042 * 299.59314 * 19 17 16 21 21 C 1.54936 * 103.22904 * 159.72454 * 20 19 17 22 22 C 1.54598 * 102.91768 * 322.58726 * 21 20 19 23 23 C 1.47898 * 111.00347 * 56.99244 * 19 17 16 24 24 H 0.96998 * 119.99872 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46997 * 299.72343 * 9 7 2 26 26 H 1.09005 * 109.46807 * 59.72507 * 9 7 2 27 27 H 1.08995 * 109.57761 * 296.63219 * 12 10 9 28 28 H 1.09002 * 109.57974 * 57.01968 * 12 10 9 29 29 H 1.08997 * 109.57809 * 186.92501 * 15 13 12 30 30 H 1.08997 * 109.57202 * 66.54611 * 15 13 12 31 31 H 1.09003 * 109.38609 * 302.86971 * 16 15 13 32 32 H 1.08994 * 109.30728 * 183.12351 * 16 15 13 33 33 H 1.09008 * 110.66750 * 278.15747 * 20 19 17 34 34 H 1.08997 * 110.66696 * 41.28841 * 20 19 17 35 35 H 1.08997 * 110.72471 * 204.22913 * 21 20 19 36 36 H 1.09006 * 110.87497 * 81.01141 * 21 20 19 37 37 H 1.09004 * 110.30489 * 263.04078 * 22 21 20 38 38 H 1.09000 * 110.31111 * 140.87699 * 22 21 20 39 39 H 1.09005 * 109.91298 * 333.50542 * 23 19 17 40 40 H 1.08997 * 109.92147 * 94.59996 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0037 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 0.0054 11 1 3.5787 -3.1807 -0.8289 12 6 3.6206 -3.3116 1.3198 13 16 4.1506 -5.0494 1.2727 14 8 3.4723 -5.7231 0.2214 15 6 5.9144 -4.9027 0.8595 16 6 6.0570 -4.0486 -0.4031 17 6 5.5405 -2.6375 -0.1383 18 1 5.9882 -2.2579 0.7801 19 7 5.9210 -1.7661 -1.2581 20 6 7.3974 -1.7075 -1.4092 21 6 7.5855 -1.2254 -2.8695 22 6 6.4448 -1.9484 -3.6218 23 6 5.4052 -2.2942 -2.5397 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6845 -0.8936 26 1 3.8752 -0.6763 0.8864 27 1 4.1058 -2.8043 2.1536 28 1 2.5384 -3.2629 1.4402 29 1 6.3309 -5.8937 0.6791 30 1 6.4443 -4.4265 1.6843 31 1 5.4812 -4.4991 -1.2116 32 1 7.1076 -4.0017 -0.6896 33 1 7.8276 -0.9911 -0.7091 34 1 7.8378 -2.6948 -1.2702 35 1 8.5575 -1.5331 -3.2551 36 1 7.4690 -0.1439 -2.9396 37 1 6.8186 -2.8581 -4.0918 38 1 6.0067 -1.2878 -4.3700 39 1 5.2835 -3.3754 -2.4737 40 1 4.4493 -1.8269 -2.7761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259772823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:41 Heat of formation + Delta-G solvation = -32.965796 kcal Electronic energy + Delta-G solvation = -20292.619855 eV Core-core repulsion = 17426.783490 eV Total energy + Delta-G solvation = -2865.836364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.70880 -36.01794 -35.23599 -33.24025 -31.59542 -30.59709 -28.74476 -27.60839 -25.41464 -23.54703 -22.19399 -20.93484 -20.23582 -18.74923 -17.29896 -16.71344 -16.27111 -15.66533 -15.13195 -14.98690 -14.24061 -13.89673 -13.68858 -13.59398 -13.13179 -12.89192 -12.70807 -12.43572 -12.04531 -11.77698 -11.63007 -11.42369 -11.34057 -11.27743 -11.01525 -10.96746 -10.85123 -10.43142 -10.34136 -10.21170 -9.83663 -9.60883 -9.21861 -8.97998 -8.45527 -8.00875 -7.78889 -5.96186 -3.92498 1.98390 2.90159 3.38023 3.44523 3.51394 4.08349 4.24483 4.53601 4.72941 4.78792 4.91212 5.01387 5.07310 5.09429 5.35978 5.40844 5.45167 5.54852 5.60874 5.71202 5.77416 5.85514 5.87401 5.88291 5.96954 6.01465 6.11261 6.19315 6.25298 6.40342 6.57732 6.73667 6.93970 7.16633 7.34582 7.48055 7.61701 7.90907 8.62812 9.09385 9.67365 11.17335 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.009051 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.840976 B = 3092.832393 C = 4627.201166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.006 3.994 10 C -0.060 4.060 11 H 0.064 0.936 12 C -0.411 4.411 13 S 1.212 4.788 14 O -0.854 6.854 15 C -0.437 4.437 16 C -0.153 4.153 17 C 0.069 3.931 18 H 0.084 0.916 19 N -0.495 5.495 20 C 0.025 3.975 21 C -0.122 4.122 22 C -0.130 4.130 23 C 0.027 3.973 24 H 0.261 0.739 25 H 0.032 0.968 26 H 0.013 0.987 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.859 -7.183 2.713 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.086 0.914 9 C -0.033 4.033 10 C -0.080 4.080 11 H 0.083 0.917 12 C -0.550 4.550 13 S 1.412 4.588 14 O -0.849 6.849 15 C -0.573 4.573 16 C -0.193 4.193 17 C -0.040 4.040 18 H 0.102 0.898 19 N -0.217 5.217 20 C -0.103 4.103 21 C -0.160 4.160 22 C -0.169 4.169 23 C -0.101 4.101 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.032 0.968 27 H 0.129 0.871 28 H 0.144 0.856 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.950 -7.403 2.969 17.833 hybrid contribution 0.996 1.162 -2.091 2.591 sum 16.946 -6.240 0.878 18.080 Atomic orbital electron populations 1.69929 1.06319 1.26669 1.51774 1.24998 0.94632 0.99063 0.94791 0.86774 0.80354 0.83640 0.78470 1.20524 1.21824 1.18807 1.21219 0.89866 0.94110 1.50152 0.91351 1.19487 0.96036 0.90435 0.97301 1.20896 0.90797 1.01199 0.95078 0.91750 1.27583 1.10205 1.14202 1.02994 1.69822 0.84984 0.89011 1.15014 1.93122 1.66866 1.64113 1.60825 1.27598 1.21418 1.04714 1.03612 1.22183 1.02392 0.97254 0.97427 1.22028 0.97670 0.89189 0.95084 0.89775 1.65028 1.07421 1.46539 1.02711 1.23360 0.89962 0.99881 0.97107 1.22445 0.97819 1.00969 0.94747 1.22397 0.96188 1.00110 0.98169 1.22972 0.99396 0.98810 0.88926 0.92949 0.94976 0.96825 0.87089 0.85591 0.88275 0.86900 0.91339 0.91410 0.90337 0.93484 0.91622 0.90814 0.92066 0.91119 0.93403 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.96 55.43 0.77 -27.74 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.46 6.53 56.52 0.37 -6.10 16 7 C -0.52 -14.77 8.92 -34.44 -0.31 -15.08 16 8 H 0.07 2.14 7.33 -52.48 -0.38 1.75 16 9 C 0.01 0.14 3.31 -27.89 -0.09 0.05 16 10 C -0.06 -1.19 1.23 -90.79 -0.11 -1.30 16 11 H 0.06 1.46 7.57 -51.93 -0.39 1.07 16 12 C -0.41 -6.82 5.57 37.20 0.21 -6.61 16 13 S 1.21 15.90 13.75 -107.50 -1.48 14.42 16 14 O -0.85 -17.28 18.14 -35.23 -0.64 -17.92 16 15 C -0.44 -4.89 6.44 37.21 0.24 -4.65 16 16 C -0.15 -2.16 4.32 -26.90 -0.12 -2.28 16 17 C 0.07 1.12 1.60 -68.14 -0.11 1.01 16 18 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 19 N -0.49 -8.18 4.01 -223.02 -0.89 -9.08 16 20 C 0.02 0.32 6.40 -1.90 -0.01 0.31 16 21 C -0.12 -1.46 7.06 -24.87 -0.18 -1.63 16 22 C -0.13 -1.71 6.93 -25.38 -0.18 -1.89 16 23 C 0.03 0.44 5.22 -2.76 -0.01 0.42 16 24 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 25 H 0.03 0.80 5.99 -51.93 -0.31 0.49 16 26 H 0.01 0.33 7.18 -51.93 -0.37 -0.05 16 27 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.13 2.45 6.89 -51.93 -0.36 2.10 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.14 6.27 -51.93 -0.33 0.82 16 32 H 0.07 0.87 5.62 -51.93 -0.29 0.57 16 33 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.05 0.57 5.55 -51.93 -0.29 0.28 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.80 5.46 -51.93 -0.28 0.52 16 40 H 0.09 1.64 7.77 -51.93 -0.40 1.24 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -36.86 307.69 -9.42 -46.27 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.38 Total: 1.47 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: -0.77 Total: -29.81 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.12 Total: -36.82 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.64 Total: -17.92 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Atomic # 16 Polarization: 15.90 SS G_CDS: -1.48 Total: 14.42 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -36.86 -9.42 -46.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.308 kcal (2) G-P(sol) polarization free energy of solvation -36.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds