Wall clock time and date at job start Mon Mar 30 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48504 * 109.47080 * 270.00029 * 3 2 1 5 5 H 1.48500 * 109.47189 * 30.00479 * 3 2 1 6 6 H 1.48505 * 109.47153 * 150.00618 * 3 2 1 7 7 C 1.37886 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99452 * 359.71606 * 7 2 1 9 9 C 1.50694 * 120.00288 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47141 * 179.71959 * 9 7 2 11 11 H 1.08998 * 109.38711 * 54.49325 * 10 9 7 12 12 C 1.53091 * 109.39257 * 294.78533 * 10 9 7 13 13 S 1.81747 * 108.84236 * 176.82672 * 12 10 9 14 14 O 1.42098 * 109.46925 * 297.27129 * 13 12 10 15 15 C 1.81750 * 102.22076 * 53.26365 * 13 12 10 16 16 C 1.53096 * 108.84237 * 306.73859 * 15 13 12 17 17 C 1.52580 * 109.95573 * 63.02242 * 16 15 13 18 18 H 1.09000 * 109.22505 * 49.64604 * 17 16 15 19 19 N 1.46902 * 109.18772 * 169.02724 * 17 16 15 20 20 C 1.48530 * 111.00042 * 299.59314 * 19 17 16 21 21 C 1.54936 * 103.22904 * 159.72454 * 20 19 17 22 22 C 1.54598 * 102.91768 * 322.58726 * 21 20 19 23 23 C 1.47898 * 111.00347 * 56.99244 * 19 17 16 24 24 H 0.96998 * 119.99872 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46997 * 299.72343 * 9 7 2 26 26 H 1.09005 * 109.46807 * 59.72507 * 9 7 2 27 27 H 1.08995 * 109.57761 * 296.63219 * 12 10 9 28 28 H 1.09002 * 109.57974 * 57.01968 * 12 10 9 29 29 H 1.08997 * 109.57809 * 186.92501 * 15 13 12 30 30 H 1.08997 * 109.57202 * 66.54611 * 15 13 12 31 31 H 1.09003 * 109.38609 * 302.86971 * 16 15 13 32 32 H 1.08994 * 109.30728 * 183.12351 * 16 15 13 33 33 H 1.09008 * 110.66750 * 278.15747 * 20 19 17 34 34 H 1.08997 * 110.66696 * 41.28841 * 20 19 17 35 35 H 1.08997 * 110.72471 * 204.22913 * 21 20 19 36 36 H 1.09006 * 110.87497 * 81.01141 * 21 20 19 37 37 H 1.09004 * 110.30489 * 263.04078 * 22 21 20 38 38 H 1.09000 * 110.31111 * 140.87699 * 22 21 20 39 39 H 1.09005 * 109.91298 * 333.50542 * 23 19 17 40 40 H 1.08997 * 109.92147 * 94.59996 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0037 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 0.0054 11 1 3.5787 -3.1807 -0.8289 12 6 3.6206 -3.3116 1.3198 13 16 4.1506 -5.0494 1.2727 14 8 3.4723 -5.7231 0.2214 15 6 5.9144 -4.9027 0.8595 16 6 6.0570 -4.0486 -0.4031 17 6 5.5405 -2.6375 -0.1383 18 1 5.9882 -2.2579 0.7801 19 7 5.9210 -1.7661 -1.2581 20 6 7.3974 -1.7075 -1.4092 21 6 7.5855 -1.2254 -2.8695 22 6 6.4448 -1.9484 -3.6218 23 6 5.4052 -2.2942 -2.5397 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6845 -0.8936 26 1 3.8752 -0.6763 0.8864 27 1 4.1058 -2.8043 2.1536 28 1 2.5384 -3.2629 1.4402 29 1 6.3309 -5.8937 0.6791 30 1 6.4443 -4.4265 1.6843 31 1 5.4812 -4.4991 -1.2116 32 1 7.1076 -4.0017 -0.6896 33 1 7.8276 -0.9911 -0.7091 34 1 7.8378 -2.6948 -1.2702 35 1 8.5575 -1.5331 -3.2551 36 1 7.4690 -0.1439 -2.9396 37 1 6.8186 -2.8581 -4.0918 38 1 6.0067 -1.2878 -4.3700 39 1 5.2835 -3.3754 -2.4737 40 1 4.4493 -1.8269 -2.7761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259772823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:41 Heat of formation + Delta-G solvation = -61.350598 kcal Electronic energy + Delta-G solvation = -20293.850712 eV Core-core repulsion = 17426.783490 eV Total energy + Delta-G solvation = -2867.067222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94011 -37.36074 -36.68381 -35.08484 -33.38131 -31.70946 -29.85332 -29.48851 -26.65868 -25.12334 -23.54915 -22.18143 -21.60670 -20.18183 -18.85514 -18.49511 -17.48580 -16.83214 -16.50823 -16.30014 -16.09846 -15.16582 -15.01594 -14.81215 -14.72648 -14.24341 -14.15198 -14.05450 -13.50637 -13.19825 -13.08466 -12.79544 -12.65046 -12.52162 -12.37487 -12.23441 -12.01158 -11.97934 -11.88186 -11.68537 -11.58853 -11.35477 -11.07870 -10.75595 -10.59825 -9.21110 -9.06774 -8.28445 -6.30168 0.86010 1.33928 1.35161 1.49227 1.77182 2.36197 2.91551 3.06774 3.09657 3.56962 3.68172 3.83767 3.90604 3.98018 4.05289 4.12437 4.24630 4.37791 4.40186 4.52634 4.67529 4.69252 4.76737 4.85178 4.88037 4.94750 5.04958 5.05472 5.09367 5.11917 5.23450 5.30268 5.36457 5.48221 5.66047 5.71967 5.98171 6.17834 6.31354 6.77613 7.33051 8.89069 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.009051 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.840976 B = 3092.832393 C = 4627.201166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.520 4.520 8 H 0.019 0.981 9 C 0.016 3.984 10 C -0.058 4.058 11 H 0.014 0.986 12 C -0.424 4.424 13 S 1.285 4.715 14 O -0.931 6.931 15 C -0.426 4.426 16 C -0.150 4.150 17 C 0.074 3.926 18 H 0.113 0.887 19 N -0.521 5.521 20 C 0.026 3.974 21 C -0.116 4.116 22 C -0.127 4.127 23 C 0.027 3.973 24 H 0.264 0.736 25 H 0.022 0.978 26 H 0.024 0.976 27 H 0.150 0.850 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.164 0.836 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.717 -6.653 4.130 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.163 1.163 7 C -0.558 4.558 8 H 0.037 0.963 9 C -0.022 4.022 10 C -0.078 4.078 11 H 0.033 0.967 12 C -0.561 4.561 13 S 1.486 4.514 14 O -0.927 6.927 15 C -0.565 4.565 16 C -0.189 4.189 17 C -0.034 4.034 18 H 0.131 0.869 19 N -0.244 5.244 20 C -0.101 4.101 21 C -0.154 4.154 22 C -0.165 4.165 23 C -0.101 4.101 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.168 0.832 28 H 0.102 0.898 29 H 0.141 0.859 30 H 0.182 0.818 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 20.793 -6.878 4.394 22.337 hybrid contribution -0.534 0.909 -2.570 2.778 sum 20.259 -5.969 1.824 21.199 Atomic orbital electron populations 1.70097 1.08385 1.27908 1.53487 1.26003 0.95530 1.03463 0.94438 0.85603 0.79706 0.78195 0.78718 1.20347 1.20999 1.16320 1.21537 0.92658 0.92280 1.49361 0.96296 1.19329 0.92440 0.93517 0.96905 1.20773 0.94007 0.97936 0.95097 0.96704 1.27687 1.08275 1.17509 1.02641 1.68937 0.85426 0.84620 1.12380 1.92985 1.70486 1.65967 1.63244 1.27580 1.18672 1.06194 1.04034 1.22124 1.03119 0.95908 0.97765 1.21957 0.94261 0.90920 0.96307 0.86929 1.64938 1.10159 1.46924 1.02335 1.23476 0.87329 1.01259 0.98037 1.22464 0.98422 1.00504 0.93968 1.22385 0.95828 1.01099 0.97178 1.22846 0.98761 0.97644 0.90868 0.92736 0.95949 0.95808 0.83187 0.89802 0.85923 0.81806 0.94870 0.88681 0.88949 0.91743 0.88623 0.91266 0.90414 0.91373 0.94506 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.01 13.96 21.45 0.30 -62.71 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.95 46.89 27.47 68.60 1.88 48.77 16 4 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.24 -10.80 6.53 99.48 0.65 -10.15 16 7 C -0.52 -31.61 8.92 25.60 0.23 -31.38 16 8 H 0.02 1.29 7.33 -2.91 -0.02 1.27 16 9 C 0.02 0.80 3.31 29.85 0.10 0.90 16 10 C -0.06 -2.37 1.23 -10.90 -0.01 -2.39 16 11 H 0.01 0.72 7.57 -2.39 -0.02 0.70 16 12 C -0.42 -14.19 5.57 72.01 0.40 -13.79 16 13 S 1.29 32.45 13.75 -56.49 -0.78 31.68 16 14 O -0.93 -39.18 18.14 -148.98 -2.70 -41.88 16 15 C -0.43 -7.53 6.44 72.01 0.46 -7.07 16 16 C -0.15 -3.77 4.32 30.49 0.13 -3.64 16 17 C 0.07 2.23 1.60 44.64 0.07 2.30 16 18 H 0.11 2.78 8.08 -2.39 -0.02 2.76 16 19 N -0.52 -16.33 4.01 -859.50 -3.44 -19.78 16 20 C 0.03 0.57 6.40 86.65 0.55 1.12 16 21 C -0.12 -2.36 7.06 31.80 0.22 -2.14 16 22 C -0.13 -3.16 6.93 31.47 0.22 -2.94 16 23 C 0.03 0.91 5.22 86.44 0.45 1.36 16 24 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 25 H 0.02 1.13 5.99 -2.39 -0.01 1.12 16 26 H 0.02 1.11 7.18 -2.38 -0.02 1.09 16 27 H 0.15 3.70 8.14 -2.39 -0.02 3.68 16 28 H 0.08 3.54 6.89 -2.39 -0.02 3.52 16 29 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.16 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 1.09 6.27 -2.39 -0.01 1.07 16 32 H 0.10 1.93 5.62 -2.39 -0.01 1.92 16 33 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.06 1.21 5.55 -2.39 -0.01 1.19 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.29 5.46 -2.38 -0.01 1.28 16 40 H 0.04 1.74 7.77 -2.39 -0.02 1.72 16 Total: -1.00 -88.35 307.69 -0.49 -88.84 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.96 Total: 12.19 kcal Atomic # 6 Polarization: -60.41 SS G_CDS: 3.29 Total: -57.12 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -3.15 Total: -82.49 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -2.70 Total: -41.88 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.88 Total: 48.77 kcal Atomic # 16 Polarization: 32.45 SS G_CDS: -0.78 Total: 31.68 kcal Total: -88.35 -0.49 -88.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.491 kcal (2) G-P(sol) polarization free energy of solvation -88.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds