Wall clock time and date at job start Mon Mar 30 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00220 * 2 1 4 4 H 1.48493 * 109.47217 * 239.99966 * 3 2 1 5 5 H 1.48498 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47153 * 119.99654 * 3 2 1 7 7 C 1.37875 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00614 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47143 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.30621 * 54.26573 * 10 9 7 12 12 C 1.53090 * 109.38734 * 294.51106 * 10 9 7 13 13 S 1.81754 * 108.84408 * 302.87567 * 12 10 9 14 14 O 1.42099 * 109.47118 * 190.74173 * 13 12 10 15 15 C 1.81753 * 102.21848 * 306.73864 * 13 12 10 16 16 C 1.53098 * 108.84059 * 53.26482 * 15 13 12 17 17 C 1.52579 * 109.38635 * 174.01593 * 10 9 7 18 18 H 1.09000 * 109.18790 * 169.77154 * 17 10 9 19 19 N 1.46900 * 109.22657 * 289.14934 * 17 10 9 20 20 C 1.47844 * 110.99800 * 176.48508 * 19 17 10 21 21 C 1.54902 * 104.79891 * 146.36633 * 20 19 17 22 22 C 1.55147 * 101.64969 * 322.92904 * 21 20 19 23 23 C 1.47438 * 111.00329 * 297.32462 * 19 17 10 24 24 H 0.96999 * 120.00001 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46917 * 59.99537 * 9 7 2 26 26 H 1.08999 * 109.46621 * 299.99910 * 9 7 2 27 27 H 1.09001 * 109.57243 * 183.07040 * 12 10 9 28 28 H 1.08999 * 109.68751 * 62.75094 * 12 10 9 29 29 H 1.08996 * 109.57496 * 293.45614 * 15 13 12 30 30 H 1.08996 * 109.57350 * 173.06846 * 15 13 12 31 31 H 1.09002 * 109.38984 * 176.82629 * 16 15 13 32 32 H 1.08999 * 109.39292 * 57.12011 * 16 15 13 33 33 H 1.08996 * 110.37915 * 27.53489 * 20 19 17 34 34 H 1.09003 * 110.37353 * 265.19591 * 20 19 17 35 35 H 1.09000 * 110.99795 * 204.83862 * 21 20 19 36 36 H 1.09000 * 110.99188 * 81.01984 * 21 20 19 37 37 H 1.09001 * 110.70257 * 154.03111 * 22 21 20 38 38 H 1.09001 * 110.70509 * 277.26815 * 22 21 20 39 39 H 1.09005 * 109.88400 * 117.33262 * 23 19 17 40 40 H 1.09004 * 109.88819 * 356.15478 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 1 2.9355 -3.5460 0.8342 12 6 3.0319 -3.6585 -1.3148 13 16 1.8605 -3.7579 -2.7010 14 8 2.5723 -4.0052 -3.9057 15 6 0.8753 -5.2225 -2.2678 16 6 0.3314 -5.0499 -0.8471 17 6 1.4863 -4.9774 0.1474 18 1 2.1690 -5.8075 -0.0341 19 7 0.9554 -5.0776 1.5135 20 6 0.1405 -6.3003 1.6768 21 6 0.3802 -6.7427 3.1418 22 6 1.8805 -6.3966 3.3322 23 6 2.0471 -5.1052 2.5040 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 3.7026 -4.5173 -1.3411 28 1 3.6125 -2.7393 -1.3925 29 1 1.5039 -6.1118 -2.3127 30 1 0.0452 -5.3240 -2.9668 31 1 -0.3073 -5.8976 -0.5987 32 1 -0.2519 -4.1308 -0.7920 33 1 0.4757 -7.0747 0.9869 34 1 -0.9143 -6.0778 1.5153 35 1 0.2083 -7.8126 3.2598 36 1 -0.2428 -6.1706 3.8294 37 1 2.1030 -6.2118 4.3831 38 1 2.5126 -7.1920 2.9373 39 1 1.9779 -4.2347 3.1564 40 1 3.0104 -5.1134 1.9940 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259772826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:44 Heat of formation + Delta-G solvation = -40.199506 kcal Electronic energy + Delta-G solvation = -20153.099146 eV Core-core repulsion = 17286.949105 eV Total energy + Delta-G solvation = -2866.150042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.46785 -36.32648 -35.01751 -33.00604 -31.41010 -30.54012 -28.70230 -27.17286 -25.46567 -23.34573 -22.29746 -20.92735 -20.55679 -18.44128 -17.13530 -16.37971 -15.98622 -15.71187 -14.86900 -14.60272 -14.27577 -14.02157 -13.72892 -13.35110 -13.21345 -13.07478 -12.48627 -12.38647 -12.08720 -11.85073 -11.44673 -11.31446 -11.01669 -10.97249 -10.91134 -10.83962 -10.70456 -10.56860 -10.40874 -10.36847 -9.90862 -9.32336 -9.15809 -8.90920 -8.30728 -7.89906 -7.48010 -5.95490 -3.96881 2.11715 3.15067 3.36637 3.41872 3.44513 4.10304 4.40973 4.49775 4.74098 4.81229 5.01109 5.16306 5.33513 5.40068 5.42198 5.44551 5.58413 5.61818 5.68612 5.74518 5.82021 5.83798 5.90555 5.99800 6.02965 6.11823 6.18792 6.28131 6.39041 6.54466 6.59959 6.71069 7.01218 7.31512 7.46764 7.71030 7.90635 8.07921 8.46510 9.08907 9.66733 11.14931 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.007884 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.194441 B = 3550.500496 C = 4818.380241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.027 3.973 10 C -0.055 4.055 11 H 0.070 0.930 12 C -0.409 4.409 13 S 1.251 4.749 14 O -0.883 6.883 15 C -0.441 4.441 16 C -0.097 4.097 17 C 0.078 3.922 18 H 0.023 0.977 19 N -0.508 5.508 20 C 0.041 3.959 21 C -0.129 4.129 22 C -0.143 4.143 23 C 0.043 3.957 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -11.307 3.899 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.075 4.075 11 H 0.089 0.911 12 C -0.549 4.549 13 S 1.450 4.550 14 O -0.879 6.879 15 C -0.578 4.578 16 C -0.135 4.135 17 C -0.031 4.031 18 H 0.040 0.960 19 N -0.232 5.232 20 C -0.087 4.087 21 C -0.167 4.167 22 C -0.182 4.182 23 C -0.085 4.085 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.466 -10.170 3.136 10.743 hybrid contribution 2.451 -1.670 0.067 2.967 sum 0.985 -11.840 3.203 12.305 Atomic orbital electron populations 1.69925 1.05767 1.26609 1.50445 1.24913 0.94733 0.98723 0.95419 0.86839 0.79792 0.83895 0.78563 1.20280 1.21333 1.20504 1.21205 0.92845 0.91032 1.50984 0.92937 1.19289 0.93398 0.89659 0.98714 1.20929 0.97585 0.95096 0.93867 0.91147 1.27419 1.10053 1.06346 1.11043 1.71810 0.99383 1.02048 0.81754 1.92925 1.75032 1.82972 1.36955 1.27599 1.10452 1.16051 1.03703 1.21316 0.97808 1.04503 0.89895 1.21933 0.95093 0.97602 0.88446 0.95951 1.63529 1.20329 1.36279 1.03093 1.23065 0.99261 0.90902 0.95457 1.22700 0.96338 1.00534 0.97161 1.22807 0.96637 0.98014 1.00733 1.22836 0.93754 0.97513 0.94385 0.92949 0.95563 0.93849 0.91845 0.85858 0.90885 0.87289 0.91864 0.87744 0.94219 0.90120 0.91500 0.90551 0.91015 0.92172 0.89982 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 13.29 55.43 0.74 -23.54 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.88 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -13.10 8.44 -34.44 -0.29 -13.39 16 8 H 0.05 1.30 7.09 -52.49 -0.37 0.93 16 9 C 0.03 0.58 3.39 -27.88 -0.09 0.49 16 10 C -0.06 -1.01 1.94 -90.79 -0.18 -1.19 16 11 H 0.07 1.34 6.40 -51.93 -0.33 1.01 16 12 C -0.41 -7.42 5.74 37.20 0.21 -7.20 16 13 S 1.25 22.35 12.09 -107.50 -1.30 21.06 16 14 O -0.88 -19.97 18.14 -35.23 -0.64 -20.61 16 15 C -0.44 -6.61 6.44 37.21 0.24 -6.37 16 16 C -0.10 -1.45 4.85 -26.89 -0.13 -1.58 16 17 C 0.08 1.25 0.96 -68.14 -0.07 1.18 16 18 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 19 N -0.51 -7.81 4.62 -223.82 -1.03 -8.84 16 20 C 0.04 0.52 5.20 -2.30 -0.01 0.51 16 21 C -0.13 -1.40 7.08 -24.59 -0.17 -1.58 16 22 C -0.14 -1.62 6.94 -24.91 -0.17 -1.79 16 23 C 0.04 0.61 5.98 -2.84 -0.02 0.59 16 24 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.03 0.57 5.08 -51.93 -0.26 0.30 16 26 H 0.04 1.05 7.79 -51.93 -0.40 0.65 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.12 2.35 7.07 -51.93 -0.37 1.98 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.06 0.84 6.35 -51.93 -0.33 0.51 16 32 H 0.10 1.68 5.92 -51.93 -0.31 1.37 16 33 H 0.04 0.49 7.47 -51.93 -0.39 0.10 16 34 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.78 6.60 -51.93 -0.34 0.44 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -30.48 310.69 -9.81 -40.29 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.46 Total: 0.30 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -0.78 Total: -28.76 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.30 Total: -32.38 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.64 Total: -20.61 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 22.35 SS G_CDS: -1.30 Total: 21.06 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.48 -9.81 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.095 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds