Wall clock time and date at job start Mon Mar 30 2020 05:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00220 * 2 1 4 4 H 1.48493 * 109.47217 * 239.99966 * 3 2 1 5 5 H 1.48498 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47153 * 119.99654 * 3 2 1 7 7 C 1.37875 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00614 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47143 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.30621 * 54.26573 * 10 9 7 12 12 C 1.53090 * 109.38734 * 294.51106 * 10 9 7 13 13 S 1.81754 * 108.84408 * 302.87567 * 12 10 9 14 14 O 1.42099 * 109.47118 * 190.74173 * 13 12 10 15 15 C 1.81753 * 102.21848 * 306.73864 * 13 12 10 16 16 C 1.53098 * 108.84059 * 53.26482 * 15 13 12 17 17 C 1.52579 * 109.38635 * 174.01593 * 10 9 7 18 18 H 1.09000 * 109.18790 * 169.77154 * 17 10 9 19 19 N 1.46900 * 109.22657 * 289.14934 * 17 10 9 20 20 C 1.47844 * 110.99800 * 176.48508 * 19 17 10 21 21 C 1.54902 * 104.79891 * 146.36633 * 20 19 17 22 22 C 1.55147 * 101.64969 * 322.92904 * 21 20 19 23 23 C 1.47438 * 111.00329 * 297.32462 * 19 17 10 24 24 H 0.96999 * 120.00001 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46917 * 59.99537 * 9 7 2 26 26 H 1.08999 * 109.46621 * 299.99910 * 9 7 2 27 27 H 1.09001 * 109.57243 * 183.07040 * 12 10 9 28 28 H 1.08999 * 109.68751 * 62.75094 * 12 10 9 29 29 H 1.08996 * 109.57496 * 293.45614 * 15 13 12 30 30 H 1.08996 * 109.57350 * 173.06846 * 15 13 12 31 31 H 1.09002 * 109.38984 * 176.82629 * 16 15 13 32 32 H 1.08999 * 109.39292 * 57.12011 * 16 15 13 33 33 H 1.08996 * 110.37915 * 27.53489 * 20 19 17 34 34 H 1.09003 * 110.37353 * 265.19591 * 20 19 17 35 35 H 1.09000 * 110.99795 * 204.83862 * 21 20 19 36 36 H 1.09000 * 110.99188 * 81.01984 * 21 20 19 37 37 H 1.09001 * 110.70257 * 154.03111 * 22 21 20 38 38 H 1.09001 * 110.70509 * 277.26815 * 22 21 20 39 39 H 1.09005 * 109.88400 * 117.33262 * 23 19 17 40 40 H 1.09004 * 109.88819 * 356.15478 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 1 2.9355 -3.5460 0.8342 12 6 3.0319 -3.6585 -1.3148 13 16 1.8605 -3.7579 -2.7010 14 8 2.5723 -4.0052 -3.9057 15 6 0.8753 -5.2225 -2.2678 16 6 0.3314 -5.0499 -0.8471 17 6 1.4863 -4.9774 0.1474 18 1 2.1690 -5.8075 -0.0341 19 7 0.9554 -5.0776 1.5135 20 6 0.1405 -6.3003 1.6768 21 6 0.3802 -6.7427 3.1418 22 6 1.8805 -6.3966 3.3322 23 6 2.0471 -5.1052 2.5040 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 3.7026 -4.5173 -1.3411 28 1 3.6125 -2.7393 -1.3925 29 1 1.5039 -6.1118 -2.3127 30 1 0.0452 -5.3240 -2.9668 31 1 -0.3073 -5.8976 -0.5987 32 1 -0.2519 -4.1308 -0.7920 33 1 0.4757 -7.0747 0.9869 34 1 -0.9143 -6.0778 1.5153 35 1 0.2083 -7.8126 3.2598 36 1 -0.2428 -6.1706 3.8294 37 1 2.1030 -6.2118 4.3831 38 1 2.5126 -7.1920 2.9373 39 1 1.9779 -4.2347 3.1564 40 1 3.0104 -5.1134 1.9940 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259772826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:43 Heat of formation + Delta-G solvation = -60.535839 kcal Electronic energy + Delta-G solvation = -20153.980996 eV Core-core repulsion = 17286.949105 eV Total energy + Delta-G solvation = -2867.031891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66377 -37.63357 -36.60080 -34.78339 -32.97637 -31.64811 -29.74324 -28.95381 -26.79181 -24.99275 -23.65278 -22.10831 -21.55021 -19.87007 -18.77254 -17.93292 -17.40893 -16.74457 -16.43176 -16.24311 -15.76564 -15.54064 -15.12593 -14.52464 -14.39542 -14.21262 -13.97732 -13.78668 -13.61407 -13.12524 -12.95367 -12.81565 -12.64000 -12.46445 -12.21950 -12.09255 -11.98519 -11.89588 -11.82465 -11.51865 -11.45913 -11.00370 -10.86499 -10.49836 -10.30480 -9.05119 -8.94733 -7.97322 -6.02174 0.68221 1.50755 1.52605 1.58043 1.74295 2.56075 2.80080 3.11755 3.37381 3.73198 3.83886 3.90072 4.03764 4.10765 4.17604 4.27280 4.28051 4.43462 4.46123 4.62152 4.67975 4.78058 4.79457 4.96118 5.00468 5.07167 5.10548 5.15013 5.18166 5.24602 5.27740 5.41986 5.47934 5.79192 6.04747 6.16549 6.21346 6.31963 6.52315 7.12992 7.63556 9.12804 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.007884 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.194441 B = 3550.500496 C = 4818.380241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.018 3.982 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.035 3.965 10 C -0.046 4.046 11 H 0.060 0.940 12 C -0.406 4.406 13 S 1.246 4.754 14 O -0.933 6.933 15 C -0.423 4.423 16 C -0.095 4.095 17 C 0.082 3.918 18 H 0.030 0.970 19 N -0.530 5.530 20 C 0.037 3.963 21 C -0.123 4.123 22 C -0.136 4.136 23 C 0.038 3.962 24 H 0.260 0.740 25 H 0.031 0.969 26 H 0.017 0.983 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 -12.994 4.391 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.568 4.568 8 H 0.069 0.931 9 C -0.002 4.002 10 C -0.066 4.066 11 H 0.079 0.921 12 C -0.545 4.545 13 S 1.449 4.551 14 O -0.928 6.928 15 C -0.562 4.562 16 C -0.133 4.133 17 C -0.027 4.027 18 H 0.048 0.952 19 N -0.254 5.254 20 C -0.090 4.090 21 C -0.161 4.161 22 C -0.174 4.174 23 C -0.090 4.090 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.735 -11.843 3.624 12.506 hybrid contribution 2.511 -1.192 -0.008 2.780 sum 0.776 -13.035 3.616 13.550 Atomic orbital electron populations 1.70015 1.06811 1.27131 1.51810 1.25538 0.95422 1.01482 0.95642 0.86026 0.78754 0.80823 0.78550 1.19809 1.21213 1.20373 1.21606 0.93047 0.92469 1.49701 0.93147 1.19123 0.93575 0.89917 0.97573 1.20753 0.96806 0.95450 0.93615 0.92130 1.27321 1.10217 1.06228 1.10765 1.71296 0.98883 1.04313 0.80608 1.92862 1.75946 1.84964 1.39067 1.27418 1.10420 1.14068 1.04313 1.21316 0.97566 1.05050 0.89376 1.21809 0.95356 0.95968 0.89522 0.95192 1.63470 1.20963 1.38320 1.02677 1.23159 0.98862 0.90005 0.96993 1.22693 0.95725 1.01919 0.95757 1.22766 0.97266 0.96498 1.00894 1.22821 0.93178 0.98585 0.94373 0.93056 0.95106 0.96424 0.90745 0.87212 0.90071 0.84711 0.89201 0.88993 0.93285 0.89850 0.89132 0.90813 0.89828 0.91226 0.91799 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.63 13.29 21.45 0.28 -50.35 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.93 42.08 29.54 68.60 2.03 44.10 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.53 -26.87 8.44 25.60 0.22 -26.66 16 8 H 0.05 2.52 7.09 -2.91 -0.02 2.50 16 9 C 0.04 1.57 3.39 29.85 0.10 1.67 16 10 C -0.05 -1.70 1.94 -10.90 -0.02 -1.72 16 11 H 0.06 2.33 6.40 -2.39 -0.02 2.31 16 12 C -0.41 -14.61 5.74 72.01 0.41 -14.20 16 13 S 1.25 43.93 12.09 -56.49 -0.68 43.25 16 14 O -0.93 -42.13 18.14 -148.98 -2.70 -44.83 16 15 C -0.42 -11.60 6.44 72.01 0.46 -11.14 16 16 C -0.09 -2.61 4.85 30.49 0.15 -2.47 16 17 C 0.08 2.50 0.96 44.64 0.04 2.55 16 18 H 0.03 0.89 8.06 -2.39 -0.02 0.87 16 19 N -0.53 -15.57 4.62 -862.02 -3.98 -19.55 16 20 C 0.04 0.84 5.20 86.77 0.45 1.29 16 21 C -0.12 -2.31 7.08 31.98 0.23 -2.08 16 22 C -0.14 -2.74 6.94 31.77 0.22 -2.52 16 23 C 0.04 1.05 5.98 86.64 0.52 1.57 16 24 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 25 H 0.03 1.34 5.08 -2.39 -0.01 1.33 16 26 H 0.02 0.87 7.79 -2.39 -0.02 0.85 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.11 4.24 7.07 -2.39 -0.02 4.22 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.09 2.07 6.35 -2.39 -0.02 2.06 16 32 H 0.09 2.83 5.92 -2.39 -0.01 2.81 16 33 H 0.05 1.03 7.47 -2.39 -0.02 1.01 16 34 H 0.08 1.84 8.01 -2.39 -0.02 1.82 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.05 1.33 6.60 -2.39 -0.02 1.32 16 Total: -1.00 -64.82 310.69 -0.80 -65.62 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.01 Total: 14.05 kcal Atomic # 6 Polarization: -55.54 SS G_CDS: 3.24 Total: -52.30 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -3.70 Total: -69.89 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -2.70 Total: -44.83 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 43.93 SS G_CDS: -0.68 Total: 43.25 kcal Total: -64.82 -0.80 -65.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.089 kcal (2) G-P(sol) polarization free energy of solvation -64.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds