Wall clock time and date at job start Mon Mar 30 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47502 * 270.00255 * 3 2 1 5 5 H 1.48495 * 109.47019 * 30.00451 * 3 2 1 6 6 H 1.48508 * 109.46920 * 150.00163 * 3 2 1 7 7 C 1.37876 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47324 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.38975 * 54.73133 * 10 9 7 12 12 C 1.53094 * 109.38712 * 295.02937 * 10 9 7 13 13 S 1.81748 * 108.84232 * 176.82636 * 12 10 9 14 14 O 1.42102 * 109.47339 * 169.25863 * 13 12 10 15 15 C 1.81750 * 102.21928 * 53.26582 * 13 12 10 16 16 C 1.53105 * 108.83929 * 306.73398 * 15 13 12 17 17 C 1.52578 * 109.39169 * 174.53673 * 10 9 7 18 18 H 1.08999 * 109.22701 * 70.53917 * 17 10 9 19 19 N 1.46905 * 109.22669 * 311.14219 * 17 10 9 20 20 C 1.47901 * 110.99901 * 295.94191 * 19 17 10 21 21 C 1.53992 * 107.05597 * 214.15600 * 20 19 17 22 22 C 1.54597 * 105.14199 * 1.21928 * 21 20 19 23 23 C 1.48530 * 111.00099 * 178.54271 * 19 17 10 24 24 H 0.96998 * 120.00053 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47420 * 60.00060 * 9 7 2 26 26 H 1.08999 * 109.46961 * 299.99930 * 9 7 2 27 27 H 1.09005 * 109.57649 * 296.63349 * 12 10 9 28 28 H 1.09000 * 109.57628 * 56.88861 * 12 10 9 29 29 H 1.09002 * 109.57857 * 66.54459 * 15 13 12 30 30 H 1.08997 * 109.57522 * 186.80197 * 15 13 12 31 31 H 1.08998 * 109.38989 * 302.87337 * 16 15 13 32 32 H 1.08999 * 109.38881 * 183.17303 * 16 15 13 33 33 H 1.08995 * 109.91918 * 94.80041 * 20 19 17 34 34 H 1.09007 * 109.91810 * 333.50302 * 20 19 17 35 35 H 1.09000 * 110.31281 * 120.13797 * 21 20 19 36 36 H 1.09007 * 110.30912 * 242.30627 * 21 20 19 37 37 H 1.09001 * 110.72347 * 140.31757 * 22 21 20 38 38 H 1.08998 * 110.72257 * 263.60151 * 22 21 20 39 39 H 1.09001 * 110.67071 * 41.28748 * 23 19 17 40 40 H 1.09003 * 110.80633 * 278.22243 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9316 -3.5514 0.8389 12 6 3.0399 -3.6514 -1.3090 13 16 4.2795 -4.9793 -1.2539 14 8 4.8535 -5.1455 -2.5432 15 6 3.2675 -6.4338 -0.8494 16 6 2.4472 -6.1313 0.4075 17 6 1.4854 -4.9782 0.1365 18 1 0.9402 -5.1756 -0.7864 19 7 0.5315 -4.8725 1.2486 20 6 1.2362 -4.6865 2.5356 21 6 0.4101 -5.4142 3.6122 22 6 -0.7791 -6.0443 2.8515 23 6 -0.2559 -6.1233 1.3952 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.3641 -3.8172 -2.1481 28 1 3.5379 -2.6889 -1.4260 29 1 2.5961 -6.6540 -1.6795 30 1 3.9160 -7.2907 -0.6670 31 1 3.1192 -5.8586 1.2212 32 1 1.8791 -7.0173 0.6908 33 1 1.3022 -3.6247 2.7728 34 1 2.2349 -5.1196 2.4781 35 1 1.0090 -6.1909 4.0880 36 1 0.0495 -4.7042 4.3566 37 1 -0.9996 -7.0398 3.2367 38 1 -1.6585 -5.4029 2.9112 39 1 0.3818 -6.9972 1.2625 40 1 -1.0859 -6.1434 0.6888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259772829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:47 Heat of formation + Delta-G solvation = -36.699506 kcal Electronic energy + Delta-G solvation = -20051.303928 eV Core-core repulsion = 17185.305657 eV Total energy + Delta-G solvation = -2865.998270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.61398 -35.98527 -35.23246 -33.24812 -31.49354 -30.51221 -28.64957 -27.04109 -25.37704 -23.69598 -22.28099 -20.89724 -20.31887 -18.73606 -17.16660 -16.33868 -16.11743 -15.58373 -15.09492 -14.88023 -14.38516 -14.01747 -13.83495 -13.44279 -13.25024 -12.96212 -12.48931 -12.13666 -11.86814 -11.75378 -11.64361 -11.47628 -11.19606 -11.08222 -10.95114 -10.88267 -10.75613 -10.53793 -10.32022 -10.14029 -9.87526 -9.70792 -9.06583 -8.86779 -8.28358 -7.88949 -7.81660 -5.92354 -3.93916 1.90316 2.88954 3.34633 3.41802 3.43222 4.05765 4.32717 4.49979 4.78180 4.87999 4.94622 5.09926 5.14775 5.19010 5.41511 5.45105 5.50159 5.62858 5.69536 5.75801 5.78833 5.90129 5.95363 5.97917 6.06480 6.09208 6.17498 6.25819 6.33896 6.50120 6.63469 6.79474 7.08607 7.30260 7.48550 7.81336 7.99744 8.17207 8.49722 9.14314 9.68741 11.18238 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.008198 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.579207 B = 3414.829006 C = 5181.377932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.041 3.959 10 C -0.050 4.050 11 H 0.072 0.928 12 C -0.401 4.401 13 S 1.202 4.798 14 O -0.872 6.872 15 C -0.430 4.430 16 C -0.134 4.134 17 C 0.068 3.932 18 H 0.075 0.925 19 N -0.489 5.489 20 C 0.028 3.972 21 C -0.131 4.131 22 C -0.122 4.122 23 C 0.024 3.976 24 H 0.258 0.742 25 H 0.010 0.990 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 -13.534 7.307 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.070 4.070 11 H 0.090 0.910 12 C -0.541 4.541 13 S 1.403 4.597 14 O -0.867 6.867 15 C -0.568 4.568 16 C -0.174 4.174 17 C -0.041 4.041 18 H 0.093 0.907 19 N -0.211 5.211 20 C -0.100 4.100 21 C -0.169 4.169 22 C -0.160 4.160 23 C -0.104 4.104 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.026 -12.941 6.998 15.253 hybrid contribution -0.708 -0.105 -1.615 1.767 sum 3.318 -13.046 5.383 14.497 Atomic orbital electron populations 1.69976 1.05922 1.26246 1.50910 1.24976 0.94731 0.98898 0.95676 0.86744 0.79972 0.84181 0.77977 1.20958 1.21383 1.19850 1.21307 0.92829 0.91298 1.50316 0.92796 1.19051 0.93035 0.89185 0.98495 1.20872 0.97476 0.95088 0.93536 0.90971 1.27523 1.10482 1.12349 1.03730 1.70148 0.93792 0.88605 1.07141 1.93054 1.65813 1.83878 1.43994 1.27471 1.09978 1.15816 1.03509 1.21942 0.98820 1.00322 0.96277 1.22008 0.92373 0.94625 0.95085 0.90718 1.65023 1.21790 1.31646 1.02625 1.22992 0.96006 1.02188 0.88791 1.22401 0.96845 0.99407 0.98226 1.22441 0.98649 1.00203 0.94717 1.23359 0.97759 0.92117 0.97146 0.93225 0.97187 0.93775 0.90166 0.85485 0.90080 0.87746 0.90129 0.91131 0.89239 0.93216 0.92132 0.91211 0.91809 0.90800 0.93643 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.71 8.36 -34.44 -0.29 -14.00 16 8 H 0.05 1.35 7.07 -52.48 -0.37 0.98 16 9 C 0.04 0.97 4.24 -27.88 -0.12 0.85 16 10 C -0.05 -0.88 1.23 -90.78 -0.11 -0.99 16 11 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 12 C -0.40 -6.98 5.57 37.21 0.21 -6.77 16 13 S 1.20 16.87 13.75 -107.50 -1.48 15.39 16 14 O -0.87 -17.59 18.14 -35.23 -0.64 -18.23 16 15 C -0.43 -5.25 6.44 37.21 0.24 -5.01 16 16 C -0.13 -1.58 4.33 -26.89 -0.12 -1.69 16 17 C 0.07 1.04 1.60 -68.14 -0.11 0.94 16 18 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 19 N -0.49 -7.57 4.02 -223.01 -0.90 -8.47 16 20 C 0.03 0.38 5.21 -2.76 -0.01 0.37 16 21 C -0.13 -1.49 6.93 -25.37 -0.18 -1.66 16 22 C -0.12 -1.39 7.06 -24.87 -0.18 -1.56 16 23 C 0.02 0.31 6.40 -1.90 -0.01 0.29 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 1.13 6.53 -51.93 -0.34 0.79 16 27 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 28 H 0.13 2.38 6.87 -51.93 -0.36 2.02 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 0.81 6.27 -51.93 -0.33 0.48 16 32 H 0.07 0.78 5.62 -51.93 -0.29 0.49 16 33 H 0.09 1.43 7.75 -51.93 -0.40 1.03 16 34 H 0.05 0.59 5.46 -51.93 -0.28 0.31 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.52 5.54 -51.93 -0.29 0.23 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -33.96 311.21 -9.79 -43.75 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.41 Total: 0.00 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -0.77 Total: -27.72 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.16 Total: -34.06 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.64 Total: -18.23 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 16.87 SS G_CDS: -1.48 Total: 15.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.96 -9.79 -43.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.047 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds