Wall clock time and date at job start Mon Mar 30 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47502 * 270.00255 * 3 2 1 5 5 H 1.48495 * 109.47019 * 30.00451 * 3 2 1 6 6 H 1.48508 * 109.46920 * 150.00163 * 3 2 1 7 7 C 1.37876 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47324 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.38975 * 54.73133 * 10 9 7 12 12 C 1.53094 * 109.38712 * 295.02937 * 10 9 7 13 13 S 1.81748 * 108.84232 * 176.82636 * 12 10 9 14 14 O 1.42102 * 109.47339 * 169.25863 * 13 12 10 15 15 C 1.81750 * 102.21928 * 53.26582 * 13 12 10 16 16 C 1.53105 * 108.83929 * 306.73398 * 15 13 12 17 17 C 1.52578 * 109.39169 * 174.53673 * 10 9 7 18 18 H 1.08999 * 109.22701 * 70.53917 * 17 10 9 19 19 N 1.46905 * 109.22669 * 311.14219 * 17 10 9 20 20 C 1.47901 * 110.99901 * 295.94191 * 19 17 10 21 21 C 1.53992 * 107.05597 * 214.15600 * 20 19 17 22 22 C 1.54597 * 105.14199 * 1.21928 * 21 20 19 23 23 C 1.48530 * 111.00099 * 178.54271 * 19 17 10 24 24 H 0.96998 * 120.00053 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47420 * 60.00060 * 9 7 2 26 26 H 1.08999 * 109.46961 * 299.99930 * 9 7 2 27 27 H 1.09005 * 109.57649 * 296.63349 * 12 10 9 28 28 H 1.09000 * 109.57628 * 56.88861 * 12 10 9 29 29 H 1.09002 * 109.57857 * 66.54459 * 15 13 12 30 30 H 1.08997 * 109.57522 * 186.80197 * 15 13 12 31 31 H 1.08998 * 109.38989 * 302.87337 * 16 15 13 32 32 H 1.08999 * 109.38881 * 183.17303 * 16 15 13 33 33 H 1.08995 * 109.91918 * 94.80041 * 20 19 17 34 34 H 1.09007 * 109.91810 * 333.50302 * 20 19 17 35 35 H 1.09000 * 110.31281 * 120.13797 * 21 20 19 36 36 H 1.09007 * 110.30912 * 242.30627 * 21 20 19 37 37 H 1.09001 * 110.72347 * 140.31757 * 22 21 20 38 38 H 1.08998 * 110.72257 * 263.60151 * 22 21 20 39 39 H 1.09001 * 110.67071 * 41.28748 * 23 19 17 40 40 H 1.09003 * 110.80633 * 278.22243 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9316 -3.5514 0.8389 12 6 3.0399 -3.6514 -1.3090 13 16 4.2795 -4.9793 -1.2539 14 8 4.8535 -5.1455 -2.5432 15 6 3.2675 -6.4338 -0.8494 16 6 2.4472 -6.1313 0.4075 17 6 1.4854 -4.9782 0.1365 18 1 0.9402 -5.1756 -0.7864 19 7 0.5315 -4.8725 1.2486 20 6 1.2362 -4.6865 2.5356 21 6 0.4101 -5.4142 3.6122 22 6 -0.7791 -6.0443 2.8515 23 6 -0.2559 -6.1233 1.3952 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.3641 -3.8172 -2.1481 28 1 3.5379 -2.6889 -1.4260 29 1 2.5961 -6.6540 -1.6795 30 1 3.9160 -7.2907 -0.6670 31 1 3.1192 -5.8586 1.2212 32 1 1.8791 -7.0173 0.6908 33 1 1.3022 -3.6247 2.7728 34 1 2.2349 -5.1196 2.4781 35 1 1.0090 -6.1909 4.0880 36 1 0.0495 -4.7042 4.3566 37 1 -0.9996 -7.0398 3.2367 38 1 -1.6585 -5.4029 2.9112 39 1 0.3818 -6.9972 1.2625 40 1 -1.0859 -6.1434 0.6888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259772829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:46 Heat of formation + Delta-G solvation = -61.073741 kcal Electronic energy + Delta-G solvation = -20052.360874 eV Core-core repulsion = 17185.305657 eV Total energy + Delta-G solvation = -2867.055216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76211 -37.27251 -36.69263 -34.99839 -33.11828 -31.58033 -29.65051 -28.90905 -26.62830 -25.29389 -23.51142 -22.08898 -21.53070 -20.03415 -18.42156 -18.28702 -17.29204 -16.69498 -16.50764 -16.15924 -16.10500 -15.21701 -15.17283 -14.66227 -14.35508 -14.06606 -13.99997 -13.89324 -13.44543 -13.17029 -12.87849 -12.80467 -12.62777 -12.49747 -12.26785 -12.20717 -12.00997 -11.80084 -11.71618 -11.52124 -11.40491 -11.15571 -10.87393 -10.47369 -10.42209 -9.18803 -8.92288 -8.07541 -6.15448 0.70551 1.42704 1.43353 1.53466 1.67132 2.47026 2.82114 3.22167 3.26296 3.69785 3.85356 3.95577 4.06559 4.13516 4.20764 4.26110 4.31334 4.51469 4.53559 4.60814 4.72976 4.82386 4.90664 5.02753 5.04142 5.07812 5.12301 5.23680 5.28617 5.32431 5.37208 5.47198 5.52688 5.69986 5.97180 6.10628 6.25521 6.36642 6.41071 7.05748 7.51773 9.03767 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.008198 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.579207 B = 3414.829006 C = 5181.377932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.950 3.050 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.525 4.525 8 H 0.068 0.932 9 C 0.051 3.949 10 C -0.041 4.041 11 H 0.095 0.905 12 C -0.414 4.414 13 S 1.280 4.720 14 O -0.929 6.929 15 C -0.423 4.423 16 C -0.125 4.125 17 C 0.072 3.928 18 H 0.049 0.951 19 N -0.527 5.527 20 C 0.025 3.975 21 C -0.125 4.125 22 C -0.119 4.119 23 C 0.024 3.976 24 H 0.256 0.744 25 H -0.039 1.039 26 H 0.021 0.979 27 H 0.052 0.948 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.670 -15.837 9.124 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.775 3.225 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.564 4.564 8 H 0.086 0.914 9 C 0.012 3.988 10 C -0.061 4.061 11 H 0.114 0.886 12 C -0.552 4.552 13 S 1.482 4.518 14 O -0.925 6.925 15 C -0.562 4.562 16 C -0.164 4.164 17 C -0.037 4.037 18 H 0.068 0.932 19 N -0.250 5.250 20 C -0.102 4.102 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.103 4.103 24 H 0.065 0.935 25 H -0.020 1.020 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.161 0.839 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.204 -15.220 8.814 18.650 hybrid contribution -1.467 0.545 -2.188 2.690 sum 4.737 -14.676 6.626 16.785 Atomic orbital electron populations 1.70140 1.07767 1.26946 1.52787 1.25886 0.95521 1.02886 0.95711 0.85679 0.79322 0.79594 0.77868 1.21062 1.21414 1.17742 1.21838 0.93711 0.92292 1.48533 0.91410 1.18833 0.93509 0.91462 0.94949 1.20696 0.96565 0.94274 0.94520 0.88644 1.27596 1.11096 1.14047 1.02454 1.69464 0.91173 0.87250 1.03917 1.92937 1.67742 1.84971 1.46816 1.27415 1.10013 1.15423 1.03373 1.21898 0.98466 0.99275 0.96781 1.21834 0.92872 0.94551 0.94490 0.93225 1.64875 1.22776 1.33972 1.03400 1.22993 0.97795 1.00724 0.88679 1.22392 0.96751 0.99838 0.97316 1.22439 0.97925 1.01416 0.93885 1.23399 0.97423 0.91707 0.97779 0.93482 1.02024 0.96083 0.92906 0.87336 0.91215 0.83946 0.87057 0.88886 0.92730 0.90529 0.89040 0.91784 0.88905 0.92724 0.91204 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.53 -28.59 8.36 25.60 0.21 -28.37 16 8 H 0.07 3.41 7.07 -2.91 -0.02 3.39 16 9 C 0.05 2.56 4.24 29.85 0.13 2.69 16 10 C -0.04 -1.46 1.23 -10.90 -0.01 -1.48 16 11 H 0.10 2.96 7.56 -2.39 -0.02 2.94 16 12 C -0.41 -14.71 5.57 72.01 0.40 -14.31 16 13 S 1.28 33.34 13.75 -56.49 -0.78 32.56 16 14 O -0.93 -36.40 18.14 -148.98 -2.70 -39.10 16 15 C -0.42 -8.65 6.44 72.02 0.46 -8.19 16 16 C -0.12 -2.42 4.33 30.49 0.13 -2.28 16 17 C 0.07 2.15 1.60 44.63 0.07 2.22 16 18 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 19 N -0.53 -16.13 4.02 -859.48 -3.45 -19.58 16 20 C 0.03 0.65 5.21 86.45 0.45 1.10 16 21 C -0.12 -2.51 6.93 31.47 0.22 -2.29 16 22 C -0.12 -2.44 7.06 31.80 0.22 -2.22 16 23 C 0.02 0.58 6.40 86.65 0.55 1.13 16 24 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 25 H -0.04 -2.30 8.14 -2.39 -0.02 -2.32 16 26 H 0.02 1.15 6.53 -2.39 -0.02 1.13 16 27 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.11 4.20 6.87 -2.39 -0.02 4.18 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.14 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.11 1.56 6.27 -2.39 -0.01 1.54 16 32 H 0.09 1.53 5.62 -2.39 -0.01 1.51 16 33 H 0.05 1.77 7.75 -2.39 -0.02 1.75 16 34 H 0.08 1.50 5.46 -2.38 -0.01 1.49 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.32 5.54 -2.39 -0.01 1.31 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -78.52 311.21 -0.30 -78.82 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.01 Total: 10.24 kcal Atomic # 6 Polarization: -55.03 SS G_CDS: 3.30 Total: -51.73 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -3.17 Total: -77.09 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -2.70 Total: -39.10 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 33.34 SS G_CDS: -0.78 Total: 32.56 kcal Total: -78.52 -0.30 -78.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.749 kcal (2) G-P(sol) polarization free energy of solvation -78.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds