Wall clock time and date at job start Mon Mar 30 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00445 * 2 1 4 4 H 1.48500 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47072 * 59.99195 * 3 2 1 6 6 H 1.48500 * 109.46570 * 299.99674 * 3 2 1 7 7 C 1.37880 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00156 * 171.87291 * 7 2 1 9 9 C 1.50697 * 119.99921 * 351.87014 * 7 2 1 10 10 H 1.09001 * 108.87238 * 335.98146 * 9 7 2 11 11 C 1.46578 * 108.89471 * 94.58525 * 9 7 2 12 12 C 1.54357 * 111.47702 * 181.56114 * 11 9 7 13 13 O 1.40306 * 108.92171 * 283.01678 * 12 11 9 14 14 C 1.44239 * 117.15640 * 93.11435 * 13 12 11 15 15 C 1.53843 * 112.83944 * 317.91714 * 14 13 12 16 16 N 1.44348 * 112.12021 * 318.50738 * 15 14 13 17 17 C 1.46902 * 110.99978 * 215.88274 * 16 15 14 18 18 C 1.52581 * 109.22435 * 66.93031 * 17 16 15 19 19 C 1.53095 * 109.95255 * 169.00367 * 18 17 16 20 20 S 1.81753 * 108.84071 * 63.02536 * 19 18 17 21 21 C 1.81739 * 102.21983 * 306.73265 * 20 19 18 22 22 C 1.52576 * 109.22356 * 305.69162 * 17 16 15 23 23 H 0.97000 * 120.00699 * 184.11877 * 1 2 3 24 24 H 1.09005 * 109.07069 * 302.07283 * 11 9 7 25 25 H 1.08992 * 109.08296 * 61.04178 * 11 9 7 26 26 H 1.09006 * 109.56306 * 42.84906 * 12 11 9 27 27 H 1.09002 * 109.56041 * 163.06774 * 12 11 9 28 28 H 1.08997 * 108.81102 * 78.78746 * 14 13 12 29 29 H 1.09000 * 108.80791 * 197.16607 * 14 13 12 30 30 H 1.09003 * 108.94578 * 79.17773 * 15 14 13 31 31 H 1.08993 * 108.95615 * 197.82556 * 15 14 13 32 32 H 1.09002 * 109.21969 * 186.28875 * 17 16 15 33 33 H 1.09000 * 109.39035 * 289.15393 * 18 17 16 34 34 H 1.08997 * 109.39241 * 48.85503 * 18 17 16 35 35 H 1.08995 * 109.58056 * 303.21322 * 19 18 17 36 36 H 1.08999 * 109.68206 * 182.89117 * 19 18 17 37 37 H 1.09006 * 109.57984 * 293.45837 * 21 20 19 38 38 H 1.08998 * 109.68423 * 173.13706 * 21 20 19 39 39 H 1.09000 * 109.39495 * 311.14456 * 22 17 16 40 40 H 1.08999 * 109.38908 * 70.94820 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 1.2124 6 1 1.8905 2.3963 -1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0763 -1.1989 -0.1317 9 6 1.2622 -2.4925 0.1857 10 1 0.3282 -2.2929 0.7110 11 6 0.9547 -3.0555 -1.1322 12 6 0.1578 -4.3720 -1.0124 13 8 1.0367 -5.4047 -0.6522 14 6 1.1768 -5.6891 0.7549 15 6 1.2592 -4.4168 1.6159 16 7 2.0870 -3.4021 1.0086 17 6 2.8374 -2.6557 2.0272 18 6 3.8537 -3.5851 2.6842 19 6 4.8242 -2.7727 3.5455 20 16 3.8914 -1.9714 4.8839 21 6 2.5818 -1.1011 3.9726 22 6 1.8637 -2.1016 3.0630 23 1 -0.4851 -0.8378 0.0603 24 1 0.3671 -2.3337 -1.6996 25 1 1.8866 -3.2502 -1.6629 26 1 -0.6118 -4.2645 -0.2480 27 1 -0.3087 -4.6047 -1.9697 28 1 0.3206 -6.2794 1.0812 29 1 2.0843 -6.2735 0.9066 30 1 0.2545 -4.0177 1.7546 31 1 1.6736 -4.6750 2.5904 32 1 3.3638 -1.8286 1.5508 33 1 3.3310 -4.3075 3.3111 34 1 4.4115 -4.1149 1.9121 35 1 5.3087 -2.0130 2.9324 36 1 5.5787 -3.4340 3.9715 37 1 3.0225 -0.3087 3.3676 38 1 1.8692 -0.6702 4.6759 39 1 1.0398 -1.6013 2.5541 40 1 1.4724 -2.9207 3.6663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259779335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:33 Heat of formation + Delta-G solvation = -42.392975 kcal Electronic energy + Delta-G solvation = -20869.568543 eV Core-core repulsion = 18003.323386 eV Total energy + Delta-G solvation = -2866.245158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.50325 -37.06537 -34.54624 -32.71998 -31.17471 -31.12849 -28.17271 -26.47914 -24.82811 -23.29943 -22.71674 -21.41055 -20.05824 -18.92388 -17.08816 -16.52402 -16.08360 -15.65440 -14.82409 -14.43962 -14.28128 -14.04556 -13.81091 -13.58869 -13.30526 -12.95314 -12.52994 -12.41375 -12.15500 -12.03660 -11.33473 -11.24073 -11.19142 -10.96569 -10.82259 -10.69277 -10.30394 -10.24939 -10.12007 -9.85202 -9.72677 -9.29884 -9.01333 -8.69236 -8.23743 -7.47031 -7.32818 -6.50984 -4.20719 2.07533 2.80407 3.34075 3.34834 3.48755 4.25939 4.38432 4.69092 5.07261 5.21260 5.28397 5.28636 5.36394 5.45490 5.52109 5.65181 5.73671 5.76348 5.86366 5.90613 5.97104 6.03846 6.09247 6.14673 6.22146 6.30098 6.31289 6.37544 6.56211 6.69886 6.88470 6.96784 7.14575 7.47225 7.80705 7.92685 7.99305 8.30798 8.45418 8.72783 9.48845 10.86603 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.011084 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.745209 B = 2525.565418 C = 4231.076426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 1.062 2.938 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.194 3.806 10 H 0.009 0.991 11 C -0.121 4.121 12 C 0.064 3.936 13 O -0.384 6.384 14 C 0.077 3.923 15 C 0.019 3.981 16 N -0.517 5.517 17 C 0.092 3.908 18 C -0.116 4.116 19 C -0.070 4.070 20 S -0.297 6.297 21 C -0.063 4.063 22 C -0.140 4.140 23 H 0.269 0.731 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -6.428 5.384 9.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.891 3.109 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.629 4.629 8 H 0.076 0.924 9 C 0.089 3.911 10 H 0.027 0.973 11 C -0.159 4.159 12 C -0.014 4.014 13 O -0.303 6.303 14 C 0.000 4.000 15 C -0.111 4.111 16 N -0.240 5.240 17 C -0.017 4.017 18 C -0.155 4.155 19 C -0.219 4.219 20 S -0.072 6.072 21 C -0.212 4.212 22 C -0.180 4.180 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.347 -5.143 5.972 9.000 hybrid contribution -0.894 -0.972 -0.438 1.391 sum 3.453 -6.115 5.534 8.941 Atomic orbital electron populations 1.70779 1.06839 1.30966 1.45893 1.25707 0.96372 1.02308 0.93579 0.83625 0.74792 0.75258 0.77251 1.21298 1.21238 1.21243 1.21913 0.95530 0.90944 1.54507 0.92445 1.18486 0.91973 0.90539 0.90121 0.97326 1.21292 0.99891 0.94428 1.00318 1.22519 0.91687 0.88797 0.98352 1.87323 1.65861 1.54133 1.22996 1.22924 0.99907 0.95649 0.81497 1.22460 0.96639 0.94572 0.97453 1.61648 1.27839 1.13913 1.20592 1.21578 0.93677 0.96234 0.90169 1.21845 0.97042 0.98157 0.98458 1.23365 0.99392 1.01569 0.97524 1.86509 1.36948 1.65292 1.18460 1.23357 0.97323 0.99953 1.00585 1.22306 1.00474 0.97921 0.97326 0.91884 0.91787 0.91818 0.94668 0.91256 0.94372 0.90193 0.95324 0.91294 0.87423 0.91849 0.90338 0.89841 0.88445 0.89557 0.88700 0.89604 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.15 13.62 55.43 0.75 -24.39 16 2 C 0.03 0.66 5.44 -17.82 -0.10 0.57 16 3 Si 1.06 23.71 29.91 -169.99 -5.08 18.63 16 4 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.59 -14.74 6.01 -34.44 -0.21 -14.95 16 8 H 0.06 1.50 6.87 -52.48 -0.36 1.13 16 9 C 0.19 4.41 0.81 -71.43 -0.06 4.36 16 10 H 0.01 0.23 4.99 -51.93 -0.26 -0.03 16 11 C -0.12 -2.65 4.92 -29.08 -0.14 -2.79 16 12 C 0.06 1.20 6.39 37.87 0.24 1.44 16 13 O -0.38 -7.33 10.27 -33.65 -0.35 -7.67 16 14 C 0.08 1.26 7.02 37.60 0.26 1.53 16 15 C 0.02 0.32 3.81 -4.75 -0.02 0.31 16 16 N -0.52 -10.25 4.29 -225.12 -0.97 -11.22 16 17 C 0.09 1.70 1.48 -68.14 -0.10 1.59 16 18 C -0.12 -1.77 4.81 -26.90 -0.13 -1.90 16 19 C -0.07 -0.98 6.45 37.21 0.24 -0.74 16 20 S -0.30 -4.57 22.33 -107.50 -2.40 -6.97 16 21 C -0.06 -1.06 6.45 37.21 0.24 -0.82 16 22 C -0.14 -2.53 4.27 -26.90 -0.11 -2.65 16 23 H 0.27 7.46 6.60 -40.82 -0.27 7.19 16 24 H 0.06 1.49 8.13 -51.93 -0.42 1.07 16 25 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.03 0.65 7.15 -51.93 -0.37 0.28 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.54 6.72 -51.93 -0.35 0.19 16 31 H 0.07 1.09 5.18 -51.93 -0.27 0.82 16 32 H 0.11 2.28 5.56 -51.93 -0.29 2.00 16 33 H 0.06 0.94 6.58 -51.93 -0.34 0.60 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.09 1.86 6.51 -51.93 -0.34 1.52 16 40 H 0.06 0.97 6.94 -51.93 -0.36 0.61 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -26.67 304.11 -9.57 -36.24 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.23 Total: 4.85 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 0.12 Total: -14.04 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.21 Total: -35.61 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.35 Total: -7.67 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.08 Total: 18.63 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -2.40 Total: -6.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.67 -9.57 -36.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.154 kcal (2) G-P(sol) polarization free energy of solvation -26.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds