Wall clock time and date at job start Mon Mar 30 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00445 * 2 1 4 4 H 1.48500 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47072 * 59.99195 * 3 2 1 6 6 H 1.48500 * 109.46570 * 299.99674 * 3 2 1 7 7 C 1.37880 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00156 * 171.87291 * 7 2 1 9 9 C 1.50697 * 119.99921 * 351.87014 * 7 2 1 10 10 H 1.09001 * 108.87238 * 335.98146 * 9 7 2 11 11 C 1.46578 * 108.89471 * 94.58525 * 9 7 2 12 12 C 1.54357 * 111.47702 * 181.56114 * 11 9 7 13 13 O 1.40306 * 108.92171 * 283.01678 * 12 11 9 14 14 C 1.44239 * 117.15640 * 93.11435 * 13 12 11 15 15 C 1.53843 * 112.83944 * 317.91714 * 14 13 12 16 16 N 1.44348 * 112.12021 * 318.50738 * 15 14 13 17 17 C 1.46902 * 110.99978 * 215.88274 * 16 15 14 18 18 C 1.52581 * 109.22435 * 66.93031 * 17 16 15 19 19 C 1.53095 * 109.95255 * 169.00367 * 18 17 16 20 20 S 1.81753 * 108.84071 * 63.02536 * 19 18 17 21 21 C 1.81739 * 102.21983 * 306.73265 * 20 19 18 22 22 C 1.52576 * 109.22356 * 305.69162 * 17 16 15 23 23 H 0.97000 * 120.00699 * 184.11877 * 1 2 3 24 24 H 1.09005 * 109.07069 * 302.07283 * 11 9 7 25 25 H 1.08992 * 109.08296 * 61.04178 * 11 9 7 26 26 H 1.09006 * 109.56306 * 42.84906 * 12 11 9 27 27 H 1.09002 * 109.56041 * 163.06774 * 12 11 9 28 28 H 1.08997 * 108.81102 * 78.78746 * 14 13 12 29 29 H 1.09000 * 108.80791 * 197.16607 * 14 13 12 30 30 H 1.09003 * 108.94578 * 79.17773 * 15 14 13 31 31 H 1.08993 * 108.95615 * 197.82556 * 15 14 13 32 32 H 1.09002 * 109.21969 * 186.28875 * 17 16 15 33 33 H 1.09000 * 109.39035 * 289.15393 * 18 17 16 34 34 H 1.08997 * 109.39241 * 48.85503 * 18 17 16 35 35 H 1.08995 * 109.58056 * 303.21322 * 19 18 17 36 36 H 1.08999 * 109.68206 * 182.89117 * 19 18 17 37 37 H 1.09006 * 109.57984 * 293.45837 * 21 20 19 38 38 H 1.08998 * 109.68423 * 173.13706 * 21 20 19 39 39 H 1.09000 * 109.39495 * 311.14456 * 22 17 16 40 40 H 1.08999 * 109.38908 * 70.94820 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 1.2124 6 1 1.8905 2.3963 -1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0763 -1.1989 -0.1317 9 6 1.2622 -2.4925 0.1857 10 1 0.3282 -2.2929 0.7110 11 6 0.9547 -3.0555 -1.1322 12 6 0.1578 -4.3720 -1.0124 13 8 1.0367 -5.4047 -0.6522 14 6 1.1768 -5.6891 0.7549 15 6 1.2592 -4.4168 1.6159 16 7 2.0870 -3.4021 1.0086 17 6 2.8374 -2.6557 2.0272 18 6 3.8537 -3.5851 2.6842 19 6 4.8242 -2.7727 3.5455 20 16 3.8914 -1.9714 4.8839 21 6 2.5818 -1.1011 3.9726 22 6 1.8637 -2.1016 3.0630 23 1 -0.4851 -0.8378 0.0603 24 1 0.3671 -2.3337 -1.6996 25 1 1.8866 -3.2502 -1.6629 26 1 -0.6118 -4.2645 -0.2480 27 1 -0.3087 -4.6047 -1.9697 28 1 0.3206 -6.2794 1.0812 29 1 2.0843 -6.2735 0.9066 30 1 0.2545 -4.0177 1.7546 31 1 1.6736 -4.6750 2.5904 32 1 3.3638 -1.8286 1.5508 33 1 3.3310 -4.3075 3.3111 34 1 4.4115 -4.1149 1.9121 35 1 5.3087 -2.0130 2.9324 36 1 5.5787 -3.4340 3.9715 37 1 3.0225 -0.3087 3.3676 38 1 1.8692 -0.6702 4.6759 39 1 1.0398 -1.6013 2.5541 40 1 1.4724 -2.9207 3.6663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259779335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:33 Heat of formation + Delta-G solvation = -58.439595 kcal Electronic energy + Delta-G solvation = -20870.264377 eV Core-core repulsion = 18003.323386 eV Total energy + Delta-G solvation = -2866.940991 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07272 -38.53099 -36.26628 -34.32522 -32.92079 -32.44702 -29.64026 -28.21159 -26.30105 -25.09211 -24.09902 -22.82591 -21.77397 -20.47067 -18.84647 -17.94362 -17.56411 -17.25939 -16.28829 -16.00236 -15.66752 -15.61065 -15.45921 -15.21581 -14.70360 -14.35665 -14.06828 -13.77618 -13.65749 -13.41476 -13.02153 -12.90303 -12.79681 -12.58797 -12.30003 -12.29286 -12.01940 -11.96534 -11.56623 -11.41247 -11.19468 -10.70987 -10.66316 -10.54552 -10.08245 -8.98635 -8.68560 -8.59538 -6.27886 0.83411 1.48900 1.53658 1.55314 1.70072 2.50446 2.80930 3.12722 3.34292 3.74039 3.91089 3.96232 4.02876 4.10983 4.14598 4.22732 4.26766 4.41394 4.45757 4.48791 4.54379 4.57769 4.71627 4.76644 4.78206 4.80998 4.94392 4.95204 4.98454 5.07318 5.25993 5.36110 5.47421 5.65498 5.99776 6.04217 6.44149 6.54061 6.55938 6.79602 7.47562 8.78345 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.011084 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.745209 B = 2525.565418 C = 4231.076426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 1.097 2.903 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.582 4.582 8 H 0.044 0.956 9 C 0.203 3.797 10 H -0.019 1.019 11 C -0.116 4.116 12 C 0.076 3.924 13 O -0.397 6.397 14 C 0.073 3.927 15 C 0.020 3.980 16 N -0.521 5.521 17 C 0.093 3.907 18 C -0.104 4.104 19 C -0.067 4.067 20 S -0.284 6.284 21 C -0.067 4.067 22 C -0.127 4.127 23 H 0.258 0.742 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.036 0.964 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.012 0.988 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.043 0.957 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 -8.032 6.569 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.215 4.215 3 Si 0.921 3.079 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.621 4.621 8 H 0.063 0.937 9 C 0.096 3.904 10 H -0.001 1.001 11 C -0.155 4.155 12 C -0.002 4.002 13 O -0.315 6.315 14 C -0.003 4.003 15 C -0.110 4.110 16 N -0.243 5.243 17 C -0.016 4.016 18 C -0.143 4.143 19 C -0.215 4.215 20 S -0.058 6.058 21 C -0.215 4.215 22 C -0.168 4.168 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.030 0.970 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.061 0.939 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.749 -6.768 7.166 11.411 hybrid contribution -1.276 -0.533 -0.772 1.584 sum 4.473 -7.302 6.394 10.687 Atomic orbital electron populations 1.70879 1.07710 1.30287 1.48506 1.26742 0.96356 1.05215 0.93228 0.83169 0.74734 0.72611 0.77342 1.19694 1.20699 1.21107 1.22051 0.94838 0.92208 1.52993 0.93737 1.18287 0.90892 0.90499 0.90705 1.00097 1.21166 0.99274 0.95881 0.99196 1.22350 0.91062 0.87160 0.99593 1.87303 1.65863 1.53552 1.24831 1.23158 1.02184 0.95129 0.79864 1.22526 0.95399 0.94288 0.98767 1.61630 1.27609 1.13726 1.21366 1.21561 0.94027 0.96155 0.89867 1.21727 0.96340 0.97600 0.98678 1.23449 0.99381 1.01769 0.96941 1.86484 1.36003 1.65031 1.18310 1.23262 0.98230 0.99486 1.00562 1.22127 0.99203 0.98176 0.97262 0.93124 0.94105 0.93348 0.94554 0.89173 0.91701 0.88159 0.97002 0.89087 0.90612 0.90576 0.89812 0.90053 0.85345 0.91001 0.87941 0.93878 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.86 13.62 21.45 0.29 -53.57 16 2 C -0.02 -0.84 5.44 84.66 0.46 -0.38 16 3 Si 1.10 48.64 29.91 68.60 2.05 50.69 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.58 -30.07 6.01 25.60 0.15 -29.91 16 8 H 0.04 2.38 6.87 -2.91 -0.02 2.36 16 9 C 0.20 9.49 0.81 42.01 0.03 9.52 16 10 H -0.02 -0.97 4.99 -2.39 -0.01 -0.98 16 11 C -0.12 -5.24 4.92 29.07 0.14 -5.09 16 12 C 0.08 2.81 6.39 72.44 0.46 3.28 16 13 O -0.40 -14.35 10.27 -143.33 -1.47 -15.83 16 14 C 0.07 2.17 7.02 72.27 0.51 2.68 16 15 C 0.02 0.65 3.81 87.06 0.33 0.98 16 16 N -0.52 -20.50 4.29 -866.14 -3.71 -24.21 16 17 C 0.09 3.37 1.48 44.64 0.07 3.43 16 18 C -0.10 -2.91 4.81 30.49 0.15 -2.76 16 19 C -0.07 -1.67 6.45 72.01 0.46 -1.20 16 20 S -0.28 -8.05 22.33 -56.49 -1.26 -9.31 16 21 C -0.07 -2.19 6.45 72.01 0.46 -1.72 16 22 C -0.13 -4.62 4.27 30.49 0.13 -4.49 16 23 H 0.26 15.04 6.60 -92.71 -0.61 14.43 16 24 H 0.04 1.98 8.13 -2.38 -0.02 1.96 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.04 1.34 7.15 -2.38 -0.02 1.32 16 27 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.01 0.44 6.72 -2.39 -0.02 0.42 16 31 H 0.09 2.62 5.18 -2.39 -0.01 2.61 16 32 H 0.08 3.26 5.56 -2.39 -0.01 3.24 16 33 H 0.08 1.96 6.58 -2.39 -0.02 1.95 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.04 1.94 6.51 -2.39 -0.02 1.92 16 40 H 0.07 2.26 6.94 -2.39 -0.02 2.24 16 Total: -1.00 -58.78 304.11 0.44 -58.34 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 1.18 Total: 19.55 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 3.37 Total: -25.67 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -3.42 Total: -77.78 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.47 Total: -15.83 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.05 Total: 50.69 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.26 Total: -9.31 kcal Total: -58.78 0.44 -58.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.097 kcal (2) G-P(sol) polarization free energy of solvation -58.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds