Wall clock time and date at job start Mon Mar 30 2020 05:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00261 * 2 1 4 4 H 1.48506 * 109.47086 * 270.00298 * 3 2 1 5 5 H 1.48498 * 109.47649 * 149.99762 * 3 2 1 6 6 H 1.48504 * 109.46939 * 29.99356 * 3 2 1 7 7 C 1.37879 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99668 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.95493 * 55.73739 * 9 7 2 11 11 C 1.53017 * 109.96540 * 294.51269 * 9 7 2 12 12 C 1.45866 * 115.26824 * 148.15828 * 11 9 7 13 13 S 1.83752 * 109.14380 * 64.20905 * 12 11 9 14 14 C 1.80174 * 102.69333 * 292.59562 * 13 12 11 15 15 C 1.53611 * 113.03786 * 84.92976 * 14 13 12 16 16 N 1.45539 * 109.96643 * 177.05823 * 9 7 2 17 17 C 1.46900 * 111.00006 * 346.69496 * 16 9 7 18 18 C 1.53172 * 109.54551 * 297.00771 * 17 16 9 19 19 C 1.53091 * 109.16422 * 183.15265 * 18 17 16 20 20 O 1.42902 * 109.41719 * 57.60387 * 19 18 17 21 21 C 1.42902 * 114.09747 * 298.84175 * 20 19 18 22 22 C 1.53091 * 109.41368 * 61.15961 * 21 20 19 23 23 H 0.97001 * 119.99430 * 179.97438 * 1 2 3 24 24 H 1.09004 * 108.32508 * 269.65765 * 11 9 7 25 25 H 1.09000 * 108.32509 * 26.65162 * 11 9 7 26 26 H 1.08996 * 109.52531 * 184.11388 * 12 11 9 27 27 H 1.09006 * 109.51997 * 304.24416 * 12 11 9 28 28 H 1.09001 * 108.76825 * 205.84881 * 14 13 12 29 29 H 1.09002 * 108.76764 * 324.13287 * 14 13 12 30 30 H 1.09003 * 108.15226 * 77.31811 * 15 14 13 31 31 H 1.08995 * 108.15250 * 193.86948 * 15 14 13 32 32 H 1.09003 * 109.54117 * 57.26992 * 17 16 9 33 33 H 1.09005 * 109.51997 * 303.05402 * 18 17 16 34 34 H 1.08995 * 109.52968 * 63.24039 * 18 17 16 35 35 H 1.09005 * 109.47683 * 297.62098 * 19 18 17 36 36 H 1.09005 * 109.49200 * 177.59350 * 19 18 17 37 37 H 1.08998 * 109.48262 * 301.17792 * 21 20 19 38 38 H 1.09000 * 109.49075 * 181.14489 * 21 20 19 39 39 H 1.09000 * 109.52398 * 182.48548 * 22 21 20 40 40 H 1.08999 * 109.57548 * 62.32496 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 3.5468 1.4402 0.7001 6 1 1.4466 2.6527 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5659 -2.5331 -0.8464 11 6 0.4726 -2.6530 1.3088 12 6 -0.7815 -3.3906 1.2041 13 16 -0.4214 -5.1252 0.7165 14 6 0.2027 -4.9427 -0.9639 15 6 1.7051 -4.6269 -1.0162 16 7 2.1857 -3.6126 -0.0691 17 6 3.5312 -3.1486 -0.4326 18 6 3.4986 -2.5287 -1.8329 19 6 4.9181 -2.1199 -2.2348 20 8 5.7737 -3.2634 -2.1855 21 6 5.8805 -3.8568 -0.8899 22 6 4.4996 -4.3354 -0.4340 23 1 -0.4849 -0.8401 -0.0004 24 1 1.1112 -3.1635 2.0297 25 1 0.2536 -1.6580 1.6964 26 1 -1.2912 -3.3813 2.1675 27 1 -1.4168 -2.9238 0.4513 28 1 0.0198 -5.8690 -1.5085 29 1 -0.3410 -4.1351 -1.4541 30 1 2.2529 -5.5509 -0.8312 31 1 1.9466 -4.2914 -2.0247 32 1 3.8677 -2.4044 0.2892 33 1 3.1142 -3.2586 -2.5455 34 1 2.8542 -1.6496 -1.8273 35 1 5.2865 -1.3602 -1.5453 36 1 4.9076 -1.7171 -3.2476 37 1 6.2615 -3.1199 -0.1828 38 1 6.5632 -4.7054 -0.9337 39 1 4.5711 -4.7484 0.5722 40 1 4.1349 -5.1022 -1.1174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259844627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:44 Heat of formation + Delta-G solvation = -25.935608 kcal Electronic energy + Delta-G solvation = -20873.340317 eV Core-core repulsion = 18007.808804 eV Total energy + Delta-G solvation = -2865.531513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70986 -37.43015 -34.14444 -32.55419 -31.35667 -30.72904 -29.29366 -26.34046 -24.09712 -23.15212 -22.80753 -21.97137 -20.09113 -18.84050 -17.01988 -16.00261 -15.69687 -15.56964 -15.35622 -14.74009 -14.38880 -14.22838 -13.87432 -13.51036 -13.14706 -12.78330 -12.56686 -12.36816 -12.13301 -11.94129 -11.52978 -11.18053 -10.93460 -10.86636 -10.71821 -10.41098 -10.27818 -10.22454 -10.15876 -9.88034 -9.61625 -9.22818 -9.12337 -8.50301 -8.42720 -7.30291 -7.07053 -6.47432 -4.23136 2.32912 3.08100 3.31481 3.35046 3.49302 4.21440 4.37282 4.69436 5.16946 5.18859 5.31660 5.34769 5.41826 5.47282 5.58259 5.62542 5.71603 5.78004 5.89864 5.94557 5.97570 6.06144 6.09526 6.22157 6.32689 6.38476 6.39636 6.56145 6.67286 6.82439 6.88840 7.04077 7.09738 7.49305 7.57806 7.59448 7.98176 8.30270 8.41871 8.69859 9.46370 10.85658 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.011321 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.439800 B = 2472.604006 C = 4277.514200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 1.062 2.938 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.609 4.609 8 H 0.075 0.925 9 C 0.202 3.798 10 H 0.004 0.996 11 C -0.123 4.123 12 C -0.047 4.047 13 S -0.285 6.285 14 C -0.076 4.076 15 C 0.053 3.947 16 N -0.508 5.508 17 C 0.101 3.899 18 C -0.198 4.198 19 C 0.066 3.934 20 O -0.394 6.394 21 C 0.065 3.935 22 C -0.153 4.153 23 H 0.273 0.727 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.119 0.881 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -6.239 -1.635 8.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.890 3.110 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.647 4.647 8 H 0.092 0.908 9 C 0.094 3.906 10 H 0.022 0.978 11 C -0.163 4.163 12 C -0.195 4.195 13 S -0.059 6.059 14 C -0.225 4.225 15 C -0.077 4.077 16 N -0.231 5.231 17 C -0.007 4.007 18 C -0.236 4.236 19 C -0.011 4.011 20 O -0.313 6.313 21 C -0.012 4.012 22 C -0.191 4.191 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.676 -5.827 -0.717 7.506 hybrid contribution -0.002 -0.145 -1.281 1.289 sum 4.674 -5.972 -1.998 7.842 Atomic orbital electron populations 1.70772 1.06949 1.31048 1.45359 1.25731 0.96454 1.02429 0.93594 0.83619 0.74944 0.75507 0.76883 1.21421 1.21305 1.20923 1.22536 0.95289 0.90994 1.55885 0.90765 1.19179 0.90776 0.88799 0.91827 0.97799 1.20792 0.93788 0.99751 1.01993 1.22457 1.01822 0.91861 1.03352 1.86298 1.83337 1.16430 1.19852 1.23268 0.98825 1.04423 0.96015 1.22217 0.93031 0.97134 0.95314 1.62392 1.02154 1.12833 1.45682 1.21661 0.89006 0.94706 0.95374 1.23279 0.97787 1.04358 0.98184 1.22551 0.90121 0.87237 1.01231 1.87836 1.67575 1.45580 1.30277 1.22501 0.96628 0.97162 0.84944 1.22369 0.95641 0.99302 1.01809 0.91601 0.91871 0.90790 0.89314 0.91013 0.88633 0.90534 0.92066 0.94664 0.88388 0.92721 0.86314 0.93404 0.89793 0.93498 0.89681 0.90891 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.74 12.98 55.43 0.72 -24.02 16 2 C 0.02 0.60 5.07 -17.82 -0.09 0.51 16 3 Si 1.06 23.20 29.90 -169.99 -5.08 18.11 16 4 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.61 -14.75 5.46 -34.44 -0.19 -14.94 16 8 H 0.07 1.77 4.17 -52.49 -0.22 1.55 16 9 C 0.20 4.51 1.12 -69.59 -0.08 4.43 16 10 H 0.00 0.11 5.77 -51.93 -0.30 -0.19 16 11 C -0.12 -2.69 3.78 -30.10 -0.11 -2.80 16 12 C -0.05 -0.91 6.12 33.78 0.21 -0.70 16 13 S -0.28 -5.16 21.84 -107.50 -2.35 -7.51 16 14 C -0.08 -1.31 5.60 37.47 0.21 -1.10 16 15 C 0.05 0.95 4.37 -3.53 -0.02 0.94 16 16 N -0.51 -10.08 4.10 -220.59 -0.90 -10.98 16 17 C 0.10 1.88 1.83 -67.53 -0.12 1.76 16 18 C -0.20 -3.64 4.33 -26.60 -0.12 -3.75 16 19 C 0.07 1.08 6.84 37.20 0.25 1.33 16 20 O -0.39 -6.49 10.77 -35.23 -0.38 -6.87 16 21 C 0.06 0.94 6.84 37.20 0.25 1.19 16 22 C -0.15 -2.42 5.25 -26.59 -0.14 -2.56 16 23 H 0.27 7.35 5.81 -40.82 -0.24 7.11 16 24 H 0.06 1.41 7.88 -51.93 -0.41 1.01 16 25 H 0.07 1.80 6.26 -51.93 -0.33 1.47 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.07 1.41 7.89 -51.93 -0.41 1.00 16 28 H 0.10 1.40 8.14 -51.74 -0.42 0.98 16 29 H 0.08 1.38 7.02 -51.74 -0.36 1.02 16 30 H 0.06 1.04 6.91 -51.93 -0.36 0.68 16 31 H 0.04 0.64 5.47 -51.93 -0.28 0.36 16 32 H 0.10 2.03 5.91 -51.93 -0.31 1.72 16 33 H 0.05 1.01 5.95 -51.93 -0.31 0.70 16 34 H 0.12 2.53 5.34 -51.93 -0.28 2.26 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.00 6.53 -51.93 -0.34 0.66 16 LS Contribution 295.43 15.07 4.45 4.45 Total: -1.00 -26.17 295.43 -9.37 -35.55 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.89 Total: 6.96 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 0.06 Total: -15.68 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.19 Total: -35.01 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.38 Total: -6.87 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.08 Total: 18.11 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -2.35 Total: -7.51 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.17 -9.37 -35.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259844627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.611 kcal (2) G-P(sol) polarization free energy of solvation -26.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds