Wall clock time and date at job start Mon Mar 30 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00261 * 2 1 4 4 H 1.48506 * 109.47086 * 270.00298 * 3 2 1 5 5 H 1.48498 * 109.47649 * 149.99762 * 3 2 1 6 6 H 1.48504 * 109.46939 * 29.99356 * 3 2 1 7 7 C 1.37879 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99668 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.95493 * 55.73739 * 9 7 2 11 11 C 1.53017 * 109.96540 * 294.51269 * 9 7 2 12 12 C 1.45866 * 115.26824 * 148.15828 * 11 9 7 13 13 S 1.83752 * 109.14380 * 64.20905 * 12 11 9 14 14 C 1.80174 * 102.69333 * 292.59562 * 13 12 11 15 15 C 1.53611 * 113.03786 * 84.92976 * 14 13 12 16 16 N 1.45539 * 109.96643 * 177.05823 * 9 7 2 17 17 C 1.46900 * 111.00006 * 346.69496 * 16 9 7 18 18 C 1.53172 * 109.54551 * 297.00771 * 17 16 9 19 19 C 1.53091 * 109.16422 * 183.15265 * 18 17 16 20 20 O 1.42902 * 109.41719 * 57.60387 * 19 18 17 21 21 C 1.42902 * 114.09747 * 298.84175 * 20 19 18 22 22 C 1.53091 * 109.41368 * 61.15961 * 21 20 19 23 23 H 0.97001 * 119.99430 * 179.97438 * 1 2 3 24 24 H 1.09004 * 108.32508 * 269.65765 * 11 9 7 25 25 H 1.09000 * 108.32509 * 26.65162 * 11 9 7 26 26 H 1.08996 * 109.52531 * 184.11388 * 12 11 9 27 27 H 1.09006 * 109.51997 * 304.24416 * 12 11 9 28 28 H 1.09001 * 108.76825 * 205.84881 * 14 13 12 29 29 H 1.09002 * 108.76764 * 324.13287 * 14 13 12 30 30 H 1.09003 * 108.15226 * 77.31811 * 15 14 13 31 31 H 1.08995 * 108.15250 * 193.86948 * 15 14 13 32 32 H 1.09003 * 109.54117 * 57.26992 * 17 16 9 33 33 H 1.09005 * 109.51997 * 303.05402 * 18 17 16 34 34 H 1.08995 * 109.52968 * 63.24039 * 18 17 16 35 35 H 1.09005 * 109.47683 * 297.62098 * 19 18 17 36 36 H 1.09005 * 109.49200 * 177.59350 * 19 18 17 37 37 H 1.08998 * 109.48262 * 301.17792 * 21 20 19 38 38 H 1.09000 * 109.49075 * 181.14489 * 21 20 19 39 39 H 1.09000 * 109.52398 * 182.48548 * 22 21 20 40 40 H 1.08999 * 109.57548 * 62.32496 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 3.5468 1.4402 0.7001 6 1 1.4466 2.6527 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5659 -2.5331 -0.8464 11 6 0.4726 -2.6530 1.3088 12 6 -0.7815 -3.3906 1.2041 13 16 -0.4214 -5.1252 0.7165 14 6 0.2027 -4.9427 -0.9639 15 6 1.7051 -4.6269 -1.0162 16 7 2.1857 -3.6126 -0.0691 17 6 3.5312 -3.1486 -0.4326 18 6 3.4986 -2.5287 -1.8329 19 6 4.9181 -2.1199 -2.2348 20 8 5.7737 -3.2634 -2.1855 21 6 5.8805 -3.8568 -0.8899 22 6 4.4996 -4.3354 -0.4340 23 1 -0.4849 -0.8401 -0.0004 24 1 1.1112 -3.1635 2.0297 25 1 0.2536 -1.6580 1.6964 26 1 -1.2912 -3.3813 2.1675 27 1 -1.4168 -2.9238 0.4513 28 1 0.0198 -5.8690 -1.5085 29 1 -0.3410 -4.1351 -1.4541 30 1 2.2529 -5.5509 -0.8312 31 1 1.9466 -4.2914 -2.0247 32 1 3.8677 -2.4044 0.2892 33 1 3.1142 -3.2586 -2.5455 34 1 2.8542 -1.6496 -1.8273 35 1 5.2865 -1.3602 -1.5453 36 1 4.9076 -1.7171 -3.2476 37 1 6.2615 -3.1199 -0.1828 38 1 6.5632 -4.7054 -0.9337 39 1 4.5711 -4.7484 0.5722 40 1 4.1349 -5.1022 -1.1174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259844627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:43 Heat of formation + Delta-G solvation = -41.337140 kcal Electronic energy + Delta-G solvation = -20874.008177 eV Core-core repulsion = 18007.808804 eV Total energy + Delta-G solvation = -2866.199373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18997 -38.89455 -35.82160 -34.21506 -32.94301 -32.06449 -30.81698 -28.05985 -25.67137 -24.55795 -24.37242 -23.49141 -21.69694 -20.47676 -18.67920 -17.47900 -17.32787 -16.90289 -16.76913 -16.29907 -15.86172 -15.60401 -15.55231 -14.97450 -14.72877 -14.42723 -14.13063 -13.86788 -13.59097 -13.45730 -13.00271 -12.81773 -12.64463 -12.25972 -12.22665 -12.02325 -11.96204 -11.86496 -11.61849 -11.48676 -11.04129 -10.79269 -10.54774 -10.41953 -10.22164 -8.90631 -8.59961 -8.45231 -6.23325 0.84800 1.53423 1.58152 1.59412 1.75079 2.56491 2.98176 3.18782 3.24913 3.78161 3.91154 3.99086 4.01159 4.08085 4.17186 4.24104 4.30823 4.35953 4.43698 4.58111 4.61741 4.69495 4.70708 4.80267 4.85807 4.91039 4.96022 5.00481 5.12295 5.14960 5.23395 5.44101 5.51400 5.71917 5.84145 6.12581 6.29295 6.52377 6.60326 6.78146 7.52599 8.84899 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.011321 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.439800 B = 2472.604006 C = 4277.514200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.023 4.023 3 Si 1.100 2.900 4 H -0.278 1.278 5 H -0.270 1.270 6 H -0.292 1.292 7 C -0.603 4.603 8 H 0.078 0.922 9 C 0.209 3.791 10 H -0.022 1.022 11 C -0.107 4.107 12 C -0.050 4.050 13 S -0.268 6.268 14 C -0.077 4.077 15 C 0.054 3.946 16 N -0.514 5.514 17 C 0.099 3.901 18 C -0.188 4.188 19 C 0.070 3.930 20 O -0.400 6.400 21 C 0.063 3.937 22 C -0.143 4.143 23 H 0.263 0.737 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.535 -7.645 -1.944 10.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.222 4.222 3 Si 0.924 3.076 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.218 1.218 7 C -0.640 4.640 8 H 0.096 0.904 9 C 0.101 3.899 10 H -0.004 1.004 11 C -0.147 4.147 12 C -0.197 4.197 13 S -0.042 6.042 14 C -0.226 4.226 15 C -0.076 4.076 16 N -0.236 5.236 17 C -0.009 4.009 18 C -0.227 4.227 19 C -0.007 4.007 20 O -0.319 6.319 21 C -0.014 4.014 22 C -0.181 4.181 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.123 0.877 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.305 -7.255 -1.028 9.666 hybrid contribution -0.474 0.207 -1.194 1.301 sum 5.831 -7.048 -2.222 9.414 Atomic orbital electron populations 1.70857 1.07942 1.30567 1.48167 1.26811 0.96494 1.05505 0.93423 0.83122 0.74561 0.72500 0.77408 1.20347 1.19521 1.21822 1.22832 0.95638 0.91750 1.53829 0.90411 1.18965 0.90729 0.89249 0.90994 1.00426 1.20595 0.94763 0.98256 1.01103 1.22336 1.00390 0.92917 1.04086 1.86203 1.83373 1.14250 1.20356 1.23361 0.98063 1.05492 0.95663 1.22258 0.93749 0.96952 0.94668 1.62394 1.02304 1.12117 1.46809 1.21636 0.88961 0.95683 0.94619 1.23074 0.98690 1.02743 0.98186 1.22504 0.88680 0.87428 1.02108 1.87838 1.67174 1.45427 1.31452 1.22687 0.96195 0.98276 0.84237 1.22285 0.95571 0.97820 1.02422 0.92607 0.92655 0.93940 0.87737 0.92014 0.85465 0.91982 0.90397 0.94868 0.90724 0.92870 0.89635 0.93288 0.88379 0.92904 0.86712 0.90174 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.95 12.98 21.45 0.28 -52.67 16 2 C -0.02 -1.17 5.07 84.65 0.43 -0.74 16 3 Si 1.10 47.20 29.90 68.60 2.05 49.25 16 4 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.60 -29.74 5.46 25.60 0.14 -29.60 16 8 H 0.08 3.74 4.17 -2.91 -0.01 3.73 16 9 C 0.21 9.52 1.12 44.43 0.05 9.57 16 10 H -0.02 -1.11 5.77 -2.39 -0.01 -1.12 16 11 C -0.11 -4.77 3.78 28.41 0.11 -4.66 16 12 C -0.05 -1.92 6.12 69.80 0.43 -1.49 16 13 S -0.27 -9.32 21.84 -56.49 -1.23 -10.55 16 14 C -0.08 -2.52 5.60 72.19 0.40 -2.12 16 15 C 0.05 1.84 4.37 86.52 0.38 2.22 16 16 N -0.51 -20.10 4.10 -851.80 -3.49 -23.59 16 17 C 0.10 3.60 1.83 45.03 0.08 3.69 16 18 C -0.19 -6.81 4.33 30.68 0.13 -6.68 16 19 C 0.07 2.17 6.84 72.01 0.49 2.67 16 20 O -0.40 -12.08 10.77 -148.98 -1.60 -13.69 16 21 C 0.06 1.62 6.84 72.01 0.49 2.11 16 22 C -0.14 -4.15 5.25 30.68 0.16 -3.99 16 23 H 0.26 14.85 5.81 -92.71 -0.54 14.31 16 24 H 0.05 2.50 7.88 -2.39 -0.02 2.48 16 25 H 0.04 2.14 6.26 -2.39 -0.01 2.13 16 26 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 27 H 0.06 2.50 7.89 -2.38 -0.02 2.48 16 28 H 0.13 3.36 8.14 -2.51 -0.02 3.33 16 29 H 0.06 2.23 7.02 -2.50 -0.02 2.21 16 30 H 0.08 2.43 6.91 -2.39 -0.02 2.42 16 31 H 0.03 1.17 5.47 -2.39 -0.01 1.16 16 32 H 0.07 3.06 5.91 -2.39 -0.01 3.04 16 33 H 0.05 1.92 5.95 -2.38 -0.01 1.91 16 34 H 0.09 3.69 5.34 -2.39 -0.01 3.68 16 35 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 1.88 6.53 -2.39 -0.02 1.87 16 Total: -1.00 -56.41 295.43 0.56 -55.85 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 1.26 Total: 24.43 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 3.30 Total: -29.03 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -3.21 Total: -76.26 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.60 Total: -13.69 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.05 Total: 49.25 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.23 Total: -10.55 kcal Total: -56.41 0.56 -55.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259844627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.509 kcal (2) G-P(sol) polarization free energy of solvation -56.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds