Wall clock time and date at job start Mon Mar 30 2020 05:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00037 * 2 1 4 4 H 1.48500 * 109.47288 * 269.99837 * 3 2 1 5 5 H 1.48503 * 109.47078 * 29.99731 * 3 2 1 6 6 H 1.48503 * 109.47249 * 149.99695 * 3 2 1 7 7 C 1.37878 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00296 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.19085 * 295.58473 * 9 7 2 11 11 C 1.49449 * 109.22390 * 54.96780 * 9 7 2 12 12 C 1.52404 * 105.30339 * 219.10760 * 11 9 7 13 13 S 1.74764 * 114.52621 * 269.49057 * 12 11 9 14 14 C 1.85015 * 101.65974 * 61.31539 * 13 12 11 15 15 C 1.50345 * 108.77309 * 292.80667 * 14 13 12 16 16 N 1.47457 * 109.22789 * 176.19580 * 9 7 2 17 17 C 1.46905 * 111.00199 * 327.66213 * 16 9 7 18 18 C 1.53184 * 109.53850 * 297.49487 * 17 16 9 19 19 C 1.53096 * 109.15740 * 183.15327 * 18 17 16 20 20 O 1.42901 * 109.41567 * 57.60770 * 19 18 17 21 21 C 1.42896 * 114.09927 * 298.83967 * 20 19 18 22 22 C 1.53093 * 109.41595 * 61.16183 * 21 20 19 23 23 H 0.97003 * 119.99986 * 0.02562 * 1 2 3 24 24 H 1.08993 * 110.27016 * 100.16205 * 11 9 7 25 25 H 1.09005 * 110.26971 * 338.04969 * 11 9 7 26 26 H 1.09000 * 108.47390 * 30.79691 * 12 11 9 27 27 H 1.08998 * 108.47564 * 148.18352 * 12 11 9 28 28 H 1.08997 * 109.58421 * 52.59363 * 14 13 12 29 29 H 1.08997 * 109.58137 * 173.01793 * 14 13 12 30 30 H 1.08994 * 107.95378 * 212.60911 * 15 14 13 31 31 H 1.09001 * 107.95896 * 328.85228 * 15 14 13 32 32 H 1.08998 * 109.53914 * 57.76091 * 17 16 9 33 33 H 1.08996 * 109.52435 * 303.05332 * 18 17 16 34 34 H 1.08999 * 109.52028 * 63.25020 * 18 17 16 35 35 H 1.09001 * 109.47821 * 297.62633 * 19 18 17 36 36 H 1.08995 * 109.48730 * 177.60002 * 19 18 17 37 37 H 1.09001 * 109.48554 * 301.17762 * 21 20 19 38 38 H 1.09001 * 109.48885 * 181.14794 * 21 20 19 39 39 H 1.08996 * 109.52268 * 182.48767 * 22 21 20 40 40 H 1.09000 * 109.57571 * 62.32013 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6865 -2.5870 0.9288 11 6 0.3039 -2.5206 -1.1553 12 6 -0.9607 -3.1871 -0.6269 13 16 -1.0031 -4.9229 -0.8252 14 6 0.4600 -5.4497 0.1773 15 6 1.7107 -4.9575 -0.4965 16 7 2.2113 -3.6144 -0.0912 17 6 3.3892 -3.2313 -0.8811 18 6 2.9601 -2.9029 -2.3145 19 6 4.2022 -2.5815 -3.1497 20 8 5.1011 -3.6917 -3.1108 21 6 5.5729 -4.0149 -1.8013 22 6 4.3859 -4.3940 -0.9119 23 1 -0.4850 0.8401 -0.0004 24 1 0.7228 -3.1027 -1.9761 25 1 0.0860 -1.5043 -1.4839 26 1 -1.0538 -2.9585 0.4348 27 1 -1.8190 -2.7593 -1.1449 28 1 0.3910 -5.0215 1.1772 29 1 0.4846 -6.5373 0.2441 30 1 2.5021 -5.6825 -0.3067 31 1 1.5282 -4.9381 -1.5710 32 1 3.8614 -2.3579 -0.4313 33 1 2.4433 -3.7604 -2.7455 34 1 2.2933 -2.0407 -2.3066 35 1 4.6961 -1.6995 -2.7420 36 1 3.9071 -2.3887 -4.1811 37 1 6.0847 -3.1517 -1.3759 38 1 6.2651 -4.8548 -1.8611 39 1 4.7387 -4.5981 0.0990 40 1 3.8975 -5.2819 -1.3136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259844628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:47 Heat of formation + Delta-G solvation = -22.889514 kcal Electronic energy + Delta-G solvation = -20914.631988 eV Core-core repulsion = 18049.232564 eV Total energy + Delta-G solvation = -2865.399424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.57263 -37.27366 -33.74875 -32.38455 -31.28970 -30.58758 -29.31144 -26.48732 -24.03734 -23.25815 -22.65475 -22.50340 -19.63476 -18.63275 -16.81005 -16.33439 -15.60061 -15.42323 -15.20786 -14.59648 -14.36870 -14.28331 -13.59596 -13.42862 -13.06082 -12.84144 -12.63193 -12.32503 -11.66233 -11.63865 -11.59318 -11.26973 -11.02158 -10.97214 -10.78209 -10.69166 -10.49974 -10.09576 -9.92138 -9.81719 -9.58408 -9.29572 -9.14604 -8.61549 -8.42815 -7.12291 -6.99165 -6.14324 -4.21684 2.40000 3.19255 3.22091 3.28652 3.30508 4.21461 4.27355 4.59568 5.15409 5.21948 5.36394 5.42561 5.52297 5.56429 5.65593 5.71009 5.80087 5.88389 5.94170 5.96957 6.01222 6.05803 6.20035 6.30675 6.33715 6.46319 6.52792 6.56990 6.82121 6.96123 6.98029 7.19586 7.34445 7.54953 7.63784 7.75977 7.92413 8.32609 8.52396 8.86880 9.43954 10.89114 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.011408 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.425166 B = 2453.787894 C = 4177.741695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.070 0.930 9 C 0.228 3.772 10 H 0.035 0.965 11 C -0.132 4.132 12 C -0.089 4.089 13 S -0.291 6.291 14 C -0.060 4.060 15 C 0.064 3.936 16 N -0.566 5.566 17 C 0.108 3.892 18 C -0.184 4.184 19 C 0.064 3.936 20 O -0.392 6.392 21 C 0.064 3.936 22 C -0.158 4.158 23 H 0.261 0.739 24 H 0.051 0.949 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -7.033 -2.285 8.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.123 3.877 10 H 0.052 0.948 11 C -0.173 4.173 12 C -0.237 4.237 13 S -0.065 6.065 14 C -0.208 4.208 15 C -0.064 4.064 16 N -0.292 5.292 17 C 0.000 4.000 18 C -0.223 4.223 19 C -0.013 4.013 20 O -0.311 6.311 21 C -0.013 4.013 22 C -0.196 4.196 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.126 0.874 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.154 -7.680 -2.561 9.099 hybrid contribution 0.617 2.060 0.223 2.162 sum 4.771 -5.620 -2.339 7.734 Atomic orbital electron populations 1.69942 1.05776 1.26670 1.50054 1.24917 0.94865 0.99032 0.95241 0.86599 0.79928 0.83455 0.78121 1.20693 1.21230 1.19858 1.21491 0.93454 0.89696 1.50756 0.91265 1.18873 0.88980 0.86451 0.93435 0.94755 1.21991 0.93558 1.02225 0.99505 1.22695 1.03963 0.91796 1.05249 1.85854 1.41427 1.09494 1.69686 1.23292 0.93809 1.02610 1.01119 1.21854 0.94817 0.91910 0.97812 1.60498 1.10917 1.02044 1.55692 1.21543 0.90873 0.96817 0.90766 1.23026 0.98420 1.03384 0.97452 1.22586 0.90160 0.88172 1.00423 1.87840 1.63859 1.51300 1.28129 1.22506 0.95490 0.99706 0.83590 1.22485 0.97202 0.99851 1.00061 0.92859 0.93107 0.87378 0.90296 0.90056 0.89376 0.88334 0.91511 0.94415 0.88319 0.92426 0.88118 0.93374 0.89807 0.93506 0.89690 0.90915 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 11.27 55.43 0.62 -22.48 16 2 C 0.06 1.54 5.02 -17.82 -0.09 1.45 16 3 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -12.60 6.76 -34.44 -0.23 -12.83 16 8 H 0.07 1.68 5.07 -52.49 -0.27 1.42 16 9 C 0.23 5.16 2.07 -70.31 -0.15 5.01 16 10 H 0.03 0.89 6.77 -51.93 -0.35 0.54 16 11 C -0.13 -2.89 3.45 -28.79 -0.10 -2.99 16 12 C -0.09 -1.83 5.48 36.85 0.20 -1.62 16 13 S -0.29 -5.28 21.74 -107.50 -2.34 -7.62 16 14 C -0.06 -0.98 6.29 35.83 0.23 -0.76 16 15 C 0.06 1.10 3.84 -4.00 -0.02 1.09 16 16 N -0.57 -11.08 4.49 -221.38 -0.99 -12.08 16 17 C 0.11 1.97 1.86 -67.52 -0.13 1.84 16 18 C -0.18 -3.32 3.69 -26.59 -0.10 -3.41 16 19 C 0.06 1.03 6.84 37.21 0.25 1.28 16 20 O -0.39 -6.35 10.76 -35.23 -0.38 -6.73 16 21 C 0.06 0.90 6.84 37.21 0.25 1.16 16 22 C -0.16 -2.39 4.86 -26.59 -0.13 -2.52 16 23 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 24 H 0.05 1.09 4.22 -51.93 -0.22 0.87 16 25 H 0.11 2.69 5.61 -51.93 -0.29 2.40 16 26 H 0.08 1.76 6.88 -48.77 -0.34 1.43 16 27 H 0.08 1.68 8.14 -48.77 -0.40 1.28 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.03 6.17 -51.93 -0.32 0.71 16 31 H 0.04 0.69 5.12 -51.93 -0.27 0.43 16 32 H 0.10 1.99 5.38 -51.93 -0.28 1.71 16 33 H 0.06 1.07 6.03 -51.93 -0.31 0.75 16 34 H 0.10 2.07 5.21 -51.93 -0.27 1.80 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.01 6.15 -51.93 -0.32 0.69 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -25.23 292.19 -9.43 -34.65 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.72 Total: 7.24 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 0.00 Total: -12.30 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.37 Total: -34.55 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.38 Total: -6.73 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -2.34 Total: -7.62 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -25.23 -9.43 -34.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259844628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.763 kcal (2) G-P(sol) polarization free energy of solvation -25.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds