Wall clock time and date at job start Mon Mar 30 2020 05:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00037 * 2 1 4 4 H 1.48500 * 109.47288 * 269.99837 * 3 2 1 5 5 H 1.48503 * 109.47078 * 29.99731 * 3 2 1 6 6 H 1.48503 * 109.47249 * 149.99695 * 3 2 1 7 7 C 1.37878 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00296 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.19085 * 295.58473 * 9 7 2 11 11 C 1.49449 * 109.22390 * 54.96780 * 9 7 2 12 12 C 1.52404 * 105.30339 * 219.10760 * 11 9 7 13 13 S 1.74764 * 114.52621 * 269.49057 * 12 11 9 14 14 C 1.85015 * 101.65974 * 61.31539 * 13 12 11 15 15 C 1.50345 * 108.77309 * 292.80667 * 14 13 12 16 16 N 1.47457 * 109.22789 * 176.19580 * 9 7 2 17 17 C 1.46905 * 111.00199 * 327.66213 * 16 9 7 18 18 C 1.53184 * 109.53850 * 297.49487 * 17 16 9 19 19 C 1.53096 * 109.15740 * 183.15327 * 18 17 16 20 20 O 1.42901 * 109.41567 * 57.60770 * 19 18 17 21 21 C 1.42896 * 114.09927 * 298.83967 * 20 19 18 22 22 C 1.53093 * 109.41595 * 61.16183 * 21 20 19 23 23 H 0.97003 * 119.99986 * 0.02562 * 1 2 3 24 24 H 1.08993 * 110.27016 * 100.16205 * 11 9 7 25 25 H 1.09005 * 110.26971 * 338.04969 * 11 9 7 26 26 H 1.09000 * 108.47390 * 30.79691 * 12 11 9 27 27 H 1.08998 * 108.47564 * 148.18352 * 12 11 9 28 28 H 1.08997 * 109.58421 * 52.59363 * 14 13 12 29 29 H 1.08997 * 109.58137 * 173.01793 * 14 13 12 30 30 H 1.08994 * 107.95378 * 212.60911 * 15 14 13 31 31 H 1.09001 * 107.95896 * 328.85228 * 15 14 13 32 32 H 1.08998 * 109.53914 * 57.76091 * 17 16 9 33 33 H 1.08996 * 109.52435 * 303.05332 * 18 17 16 34 34 H 1.08999 * 109.52028 * 63.25020 * 18 17 16 35 35 H 1.09001 * 109.47821 * 297.62633 * 19 18 17 36 36 H 1.08995 * 109.48730 * 177.60002 * 19 18 17 37 37 H 1.09001 * 109.48554 * 301.17762 * 21 20 19 38 38 H 1.09001 * 109.48885 * 181.14794 * 21 20 19 39 39 H 1.08996 * 109.52268 * 182.48767 * 22 21 20 40 40 H 1.09000 * 109.57571 * 62.32013 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6865 -2.5870 0.9288 11 6 0.3039 -2.5206 -1.1553 12 6 -0.9607 -3.1871 -0.6269 13 16 -1.0031 -4.9229 -0.8252 14 6 0.4600 -5.4497 0.1773 15 6 1.7107 -4.9575 -0.4965 16 7 2.2113 -3.6144 -0.0912 17 6 3.3892 -3.2313 -0.8811 18 6 2.9601 -2.9029 -2.3145 19 6 4.2022 -2.5815 -3.1497 20 8 5.1011 -3.6917 -3.1108 21 6 5.5729 -4.0149 -1.8013 22 6 4.3859 -4.3940 -0.9119 23 1 -0.4850 0.8401 -0.0004 24 1 0.7228 -3.1027 -1.9761 25 1 0.0860 -1.5043 -1.4839 26 1 -1.0538 -2.9585 0.4348 27 1 -1.8190 -2.7593 -1.1449 28 1 0.3910 -5.0215 1.1772 29 1 0.4846 -6.5373 0.2441 30 1 2.5021 -5.6825 -0.3067 31 1 1.5282 -4.9381 -1.5710 32 1 3.8614 -2.3579 -0.4313 33 1 2.4433 -3.7604 -2.7455 34 1 2.2933 -2.0407 -2.3066 35 1 4.6961 -1.6995 -2.7420 36 1 3.9071 -2.3887 -4.1811 37 1 6.0847 -3.1517 -1.3759 38 1 6.2651 -4.8548 -1.8611 39 1 4.7387 -4.5981 0.0990 40 1 3.8975 -5.2819 -1.3136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259844628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:46 Heat of formation + Delta-G solvation = -38.129361 kcal Electronic energy + Delta-G solvation = -20915.292837 eV Core-core repulsion = 18049.232564 eV Total energy + Delta-G solvation = -2866.060273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00328 -38.72663 -35.42941 -33.95199 -32.92537 -31.87396 -30.86154 -28.21219 -25.65562 -24.63325 -24.19877 -23.93550 -21.19300 -20.21572 -18.48226 -17.83709 -17.05850 -16.82340 -16.77399 -16.04165 -16.00169 -15.66366 -15.13862 -14.85358 -14.62589 -14.37004 -14.15665 -13.86669 -13.25755 -13.21019 -13.00083 -12.90466 -12.72312 -12.61164 -12.38579 -12.17350 -11.94286 -11.76905 -11.44661 -11.43236 -11.05716 -10.79918 -10.64393 -10.30578 -10.26112 -8.64357 -8.56465 -8.08029 -6.20392 0.95618 1.39608 1.43383 1.50345 1.63711 2.40914 3.00855 3.12458 3.19790 3.93095 4.02359 4.12941 4.16115 4.19532 4.24330 4.33069 4.35797 4.42801 4.52768 4.54609 4.75031 4.77494 4.84391 4.90515 4.97550 5.01542 5.06602 5.14867 5.24656 5.31216 5.41801 5.49265 5.62126 5.75424 5.90133 6.13845 6.33033 6.52493 6.85320 6.99082 7.48591 8.93749 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.011408 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.425166 B = 2453.787894 C = 4177.741695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.239 3.761 10 H -0.003 1.003 11 C -0.114 4.114 12 C -0.085 4.085 13 S -0.276 6.276 14 C -0.056 4.056 15 C 0.065 3.935 16 N -0.574 5.574 17 C 0.108 3.892 18 C -0.174 4.174 19 C 0.068 3.932 20 O -0.399 6.399 21 C 0.061 3.939 22 C -0.148 4.148 23 H 0.258 0.742 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.096 0.904 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 -8.752 -2.671 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.133 3.867 10 H 0.014 0.986 11 C -0.155 4.155 12 C -0.234 4.234 13 S -0.050 6.050 14 C -0.204 4.204 15 C -0.063 4.063 16 N -0.299 5.299 17 C -0.001 4.001 18 C -0.214 4.214 19 C -0.009 4.009 20 O -0.318 6.318 21 C -0.016 4.016 22 C -0.186 4.186 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.156 0.844 30 H 0.114 0.886 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.904 -9.412 -2.950 11.495 hybrid contribution 0.100 2.524 0.376 2.554 sum 6.003 -6.888 -2.573 9.492 Atomic orbital electron populations 1.70073 1.06882 1.26895 1.51149 1.25548 0.95471 1.01714 0.95353 0.85749 0.78841 0.80183 0.78053 1.20297 1.21709 1.19399 1.21765 0.93629 0.90623 1.49746 0.91236 1.18505 0.89159 0.87247 0.91780 0.98562 1.21715 0.94008 1.00539 0.99270 1.22460 1.03075 0.94419 1.03399 1.85728 1.42888 1.06314 1.70065 1.23449 0.92229 1.04805 0.99871 1.21949 0.96140 0.90912 0.97249 1.60409 1.10643 1.02192 1.56696 1.21512 0.90826 0.97567 0.90168 1.22848 0.98825 1.01747 0.97945 1.22529 0.89280 0.88347 1.00758 1.87840 1.63569 1.51030 1.29403 1.22709 0.95312 1.01100 0.82436 1.22408 0.96680 0.98317 1.01188 0.93260 0.92651 0.90609 0.92684 0.90775 0.90373 0.84402 0.88612 0.95242 0.90659 0.92865 0.91224 0.93354 0.88546 0.93055 0.86654 0.89760 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.29 11.27 21.45 0.24 -49.05 16 2 C 0.02 0.95 5.02 84.65 0.42 1.37 16 3 Si 0.94 41.56 29.54 68.60 2.03 43.58 16 4 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.52 -25.99 6.76 25.60 0.17 -25.82 16 8 H 0.07 3.43 5.07 -2.91 -0.01 3.42 16 9 C 0.24 11.12 2.07 42.93 0.09 11.21 16 10 H 0.00 -0.18 6.77 -2.39 -0.02 -0.19 16 11 C -0.11 -5.16 3.45 29.26 0.10 -5.06 16 12 C -0.08 -3.60 5.48 71.78 0.39 -3.21 16 13 S -0.28 -9.77 21.74 -56.49 -1.23 -11.00 16 14 C -0.06 -1.70 6.29 71.12 0.45 -1.25 16 15 C 0.07 2.10 3.84 85.05 0.33 2.42 16 16 N -0.57 -22.15 4.49 -854.31 -3.84 -25.99 16 17 C 0.11 3.80 1.86 45.04 0.08 3.88 16 18 C -0.17 -6.19 3.69 30.69 0.11 -6.08 16 19 C 0.07 2.09 6.84 72.01 0.49 2.58 16 20 O -0.40 -11.83 10.76 -148.98 -1.60 -13.43 16 21 C 0.06 1.51 6.84 72.01 0.49 2.01 16 22 C -0.15 -4.04 4.86 30.69 0.15 -3.89 16 23 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 24 H 0.06 2.41 4.22 -2.39 -0.01 2.40 16 25 H 0.08 3.95 5.61 -2.38 -0.01 3.94 16 26 H 0.05 2.57 6.88 -4.39 -0.03 2.54 16 27 H 0.07 3.19 8.14 -4.39 -0.04 3.15 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.10 2.58 6.17 -2.39 -0.01 2.56 16 31 H 0.03 1.02 5.12 -2.39 -0.01 1.01 16 32 H 0.08 3.02 5.38 -2.39 -0.01 3.00 16 33 H 0.05 1.92 6.03 -2.39 -0.01 1.90 16 34 H 0.07 2.92 5.21 -2.39 -0.01 2.91 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.07 1.91 6.15 -2.39 -0.01 1.90 16 Total: -1.00 -55.23 292.19 -0.10 -55.33 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 1.01 Total: 22.39 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 3.29 Total: -21.84 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -3.59 Total: -75.04 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.60 Total: -13.43 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: -9.77 SS G_CDS: -1.23 Total: -11.00 kcal Total: -55.23 -0.10 -55.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259844628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.205 kcal (2) G-P(sol) polarization free energy of solvation -55.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds