Wall clock time and date at job start Mon Mar 30 2020 05:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86810 * 119.99899 * 2 1 4 4 H 1.48498 * 109.46911 * 274.09445 * 3 2 1 5 5 H 1.48498 * 109.46844 * 34.09050 * 3 2 1 6 6 H 1.48491 * 109.47360 * 154.09182 * 3 2 1 7 7 C 1.37883 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99532 * 354.35375 * 7 2 1 9 9 C 1.50700 * 119.99948 * 174.35253 * 7 2 1 10 10 H 1.09002 * 109.50973 * 335.21677 * 9 7 2 11 11 C 1.53090 * 109.54190 * 95.33037 * 9 7 2 12 12 O 1.43017 * 109.25883 * 176.80261 * 11 9 7 13 13 C 1.43010 * 113.73789 * 301.32531 * 12 11 9 14 14 C 1.53102 * 109.25667 * 58.67410 * 13 12 11 15 15 N 1.47014 * 109.25409 * 303.14586 * 14 13 12 16 16 C 1.46904 * 111.00109 * 182.39182 * 15 14 13 17 17 C 1.52999 * 109.47310 * 296.05876 * 16 15 14 18 18 C 1.52579 * 109.22499 * 214.56611 * 17 16 15 19 19 C 1.53100 * 109.95658 * 168.99949 * 18 17 16 20 20 S 1.81749 * 108.84121 * 63.02177 * 19 18 17 21 21 C 1.81750 * 102.22010 * 306.73689 * 20 19 18 22 22 C 1.52572 * 109.23060 * 93.32561 * 17 16 15 23 23 H 0.96999 * 120.00555 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.50360 * 296.73222 * 11 9 7 25 25 H 1.08993 * 109.51069 * 56.82254 * 11 9 7 26 26 H 1.08999 * 109.50935 * 298.73795 * 13 12 11 27 27 H 1.09001 * 109.50706 * 178.60064 * 13 12 11 28 28 H 1.08998 * 109.50493 * 183.22100 * 14 13 12 29 29 H 1.08997 * 109.51044 * 63.08276 * 14 13 12 30 30 H 1.09002 * 109.46961 * 56.05356 * 16 15 14 31 31 H 1.08999 * 109.47291 * 176.05162 * 16 15 14 32 32 H 1.09010 * 109.21925 * 333.92184 * 17 16 15 33 33 H 1.09000 * 109.39227 * 289.14637 * 18 17 16 34 34 H 1.08995 * 109.39419 * 48.85303 * 18 17 16 35 35 H 1.08999 * 109.57978 * 303.21194 * 19 18 17 36 36 H 1.09001 * 109.57554 * 182.82816 * 19 18 17 37 37 H 1.08998 * 109.57050 * 293.45315 * 21 20 19 38 38 H 1.08995 * 109.57387 * 173.07323 * 21 20 19 39 39 H 1.09005 * 109.38798 * 311.14326 * 22 17 16 40 40 H 1.08991 * 109.39439 * 70.94744 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4100 2.0965 -1.3965 5 1 1.4924 2.6262 0.7847 6 1 3.5872 1.4169 0.6117 7 6 2.0046 -1.1940 -0.0005 8 1 1.4685 -2.1271 0.0911 9 6 3.5061 -1.1970 -0.1290 10 1 3.8301 -0.2870 -0.6341 11 6 4.1391 -1.2618 1.2635 12 8 5.5611 -1.3396 1.1321 13 6 6.0086 -2.4695 0.3784 14 6 5.3947 -2.4170 -1.0231 15 7 3.9297 -2.3689 -0.9091 16 6 3.2980 -2.3747 -2.2354 17 6 3.6909 -1.1049 -2.9930 18 6 2.5198 -0.6554 -3.8616 19 6 2.7861 0.7482 -4.4122 20 16 4.2529 0.6897 -5.4838 21 6 5.4911 -0.0811 -4.3993 22 6 4.9202 -1.3912 -3.8502 23 1 -0.4851 0.8400 0.0004 24 1 3.8739 -0.3664 1.8258 25 1 3.7727 -2.1435 1.7891 26 1 5.6972 -3.3869 0.8780 27 1 7.0956 -2.4477 0.3005 28 1 5.6872 -3.3058 -1.5822 29 1 5.7487 -1.5265 -1.5425 30 1 3.6329 -3.2490 -2.7935 31 1 2.2145 -2.4094 -2.1216 32 1 3.9282 -0.3184 -2.2765 33 1 2.3959 -1.3519 -4.6908 34 1 1.6092 -0.6423 -3.2628 35 1 2.9643 1.4368 -3.5863 36 1 1.9248 1.0832 -4.9901 37 1 5.7221 0.5914 -3.5732 38 1 6.3972 -0.2878 -4.9688 39 1 5.6765 -1.8892 -3.2433 40 1 4.6394 -2.0382 -4.6811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259867770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:41 Heat of formation + Delta-G solvation = -46.214629 kcal Electronic energy + Delta-G solvation = -20795.561936 eV Core-core repulsion = 17929.151060 eV Total energy + Delta-G solvation = -2866.410877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.45915 -37.17131 -34.39404 -32.86809 -31.38272 -30.52005 -29.02541 -26.28082 -25.05528 -23.07446 -22.46409 -22.04323 -20.43484 -18.83799 -17.06430 -16.70820 -15.84058 -15.48092 -14.81642 -14.53255 -14.43014 -14.25333 -13.95801 -13.60022 -13.37020 -13.10911 -12.77682 -12.60462 -12.59660 -12.19581 -11.68824 -11.35517 -11.22909 -11.16412 -10.78523 -10.77147 -10.50948 -10.13850 -10.01098 -9.93705 -9.85670 -9.58821 -9.31140 -9.02178 -8.56937 -7.62172 -7.33941 -6.24646 -4.24433 1.94750 2.67538 3.11445 3.24769 3.29230 4.24933 4.49914 4.65515 4.83416 4.97294 5.06071 5.13687 5.20973 5.39435 5.44511 5.48233 5.63912 5.67715 5.69563 5.82330 5.87689 5.96761 6.07390 6.12466 6.16104 6.17482 6.26289 6.29240 6.41626 6.51334 6.57742 6.76865 6.86704 7.03356 7.29709 7.82202 7.84967 7.94608 8.49747 8.86918 9.38722 10.87302 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.009879 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.777940 B = 2833.531886 C = 3862.563311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.082 3.918 3 Si 0.855 3.145 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.083 0.917 9 C 0.154 3.846 10 H 0.015 0.985 11 C 0.065 3.935 12 O -0.405 6.405 13 C 0.067 3.933 14 C 0.009 3.991 15 N -0.524 5.524 16 C 0.077 3.923 17 C -0.131 4.131 18 C -0.110 4.110 19 C -0.075 4.075 20 S -0.290 6.290 21 C -0.076 4.076 22 C -0.122 4.122 23 H 0.266 0.734 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.270 -2.096 -6.715 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.122 4.122 3 Si 0.682 3.318 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.543 4.543 8 H 0.101 0.899 9 C 0.047 3.953 10 H 0.033 0.967 11 C -0.011 4.011 12 O -0.324 6.324 13 C -0.010 4.010 14 C -0.120 4.120 15 N -0.247 5.247 16 C -0.051 4.051 17 C -0.151 4.151 18 C -0.149 4.149 19 C -0.223 4.223 20 S -0.064 6.064 21 C -0.224 4.224 22 C -0.160 4.160 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.182 -1.907 -7.413 11.954 hybrid contribution 0.339 1.288 0.668 1.491 sum 9.521 -0.618 -6.745 11.685 Atomic orbital electron populations 1.69876 1.06068 1.27043 1.49488 1.24925 0.94567 0.98389 0.94287 0.87219 0.81104 0.84669 0.78833 1.20102 1.21050 1.18422 1.20747 0.87981 0.94857 1.50716 0.89898 1.20333 0.96888 0.87836 0.90278 0.96713 1.23249 0.77579 1.01319 0.98991 1.87871 1.24459 1.46373 1.73690 1.22499 0.97776 0.89726 0.91041 1.22918 0.91261 1.00291 0.97483 1.62549 1.03739 1.43479 1.14967 1.22091 1.01835 0.93706 0.87459 1.21825 0.94261 1.01490 0.97519 1.21720 0.99828 0.93757 0.99601 1.23516 0.96526 1.01564 1.00659 1.86544 1.11235 1.81758 1.26870 1.23405 0.98542 0.99682 1.00758 1.22066 0.98235 0.95737 1.00003 0.92434 0.89734 0.92964 0.93100 0.90012 0.91132 0.94459 0.92582 0.88585 0.90528 0.91235 0.89182 0.90063 0.88161 0.90355 0.88360 0.90435 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.96 55.43 0.77 -24.26 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.85 20.18 26.58 -169.99 -4.52 15.66 16 4 H -0.28 -6.34 6.93 56.52 0.39 -5.95 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.07 6.03 56.52 0.34 -5.73 16 7 C -0.50 -12.90 7.55 -34.44 -0.26 -13.16 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.15 3.41 1.14 -68.75 -0.08 3.33 16 10 H 0.02 0.36 3.45 -51.93 -0.18 0.18 16 11 C 0.07 1.40 6.08 37.20 0.23 1.63 16 12 O -0.40 -8.12 10.83 -35.23 -0.38 -8.50 16 13 C 0.07 1.09 7.01 37.21 0.26 1.35 16 14 C 0.01 0.15 4.25 -3.71 -0.02 0.13 16 15 N -0.52 -10.15 4.74 -227.72 -1.08 -11.23 16 16 C 0.08 1.38 4.91 -3.82 -0.02 1.36 16 17 C -0.13 -2.18 1.33 -91.05 -0.12 -2.31 16 18 C -0.11 -1.80 4.96 -26.89 -0.13 -1.94 16 19 C -0.07 -1.19 6.45 37.21 0.24 -0.95 16 20 S -0.29 -4.34 22.33 -107.50 -2.40 -6.74 16 21 C -0.08 -1.03 6.45 37.21 0.24 -0.79 16 22 C -0.12 -1.68 4.44 -26.90 -0.12 -1.80 16 23 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.08 1.87 7.02 -51.93 -0.36 1.50 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.98 8.01 -51.93 -0.42 0.57 16 29 H 0.04 0.62 5.75 -51.93 -0.30 0.32 16 30 H 0.06 0.88 7.77 -51.93 -0.40 0.48 16 31 H 0.10 1.97 6.44 -51.93 -0.33 1.63 16 32 H 0.08 1.51 5.33 -51.92 -0.28 1.24 16 33 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 34 H 0.09 1.69 7.81 -51.93 -0.41 1.29 16 35 H 0.08 1.44 7.97 -51.93 -0.41 1.03 16 36 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.02 5.19 -51.93 -0.27 0.75 16 40 H 0.07 0.95 8.05 -51.93 -0.42 0.54 16 LS Contribution 304.62 15.07 4.59 4.59 Total: -1.00 -27.30 304.62 -9.26 -36.55 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.36 Total: 4.98 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 0.12 Total: -11.06 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.31 Total: -35.49 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.38 Total: -8.50 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.52 Total: 15.66 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.40 Total: -6.74 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.30 -9.26 -36.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.661 kcal (2) G-P(sol) polarization free energy of solvation -27.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds