Wall clock time and date at job start Mon Mar 30 2020 05:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86810 * 119.99899 * 2 1 4 4 H 1.48498 * 109.46911 * 274.09445 * 3 2 1 5 5 H 1.48498 * 109.46844 * 34.09050 * 3 2 1 6 6 H 1.48491 * 109.47360 * 154.09182 * 3 2 1 7 7 C 1.37883 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99532 * 354.35375 * 7 2 1 9 9 C 1.50700 * 119.99948 * 174.35253 * 7 2 1 10 10 H 1.09002 * 109.50973 * 335.21677 * 9 7 2 11 11 C 1.53090 * 109.54190 * 95.33037 * 9 7 2 12 12 O 1.43017 * 109.25883 * 176.80261 * 11 9 7 13 13 C 1.43010 * 113.73789 * 301.32531 * 12 11 9 14 14 C 1.53102 * 109.25667 * 58.67410 * 13 12 11 15 15 N 1.47014 * 109.25409 * 303.14586 * 14 13 12 16 16 C 1.46904 * 111.00109 * 182.39182 * 15 14 13 17 17 C 1.52999 * 109.47310 * 296.05876 * 16 15 14 18 18 C 1.52579 * 109.22499 * 214.56611 * 17 16 15 19 19 C 1.53100 * 109.95658 * 168.99949 * 18 17 16 20 20 S 1.81749 * 108.84121 * 63.02177 * 19 18 17 21 21 C 1.81750 * 102.22010 * 306.73689 * 20 19 18 22 22 C 1.52572 * 109.23060 * 93.32561 * 17 16 15 23 23 H 0.96999 * 120.00555 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.50360 * 296.73222 * 11 9 7 25 25 H 1.08993 * 109.51069 * 56.82254 * 11 9 7 26 26 H 1.08999 * 109.50935 * 298.73795 * 13 12 11 27 27 H 1.09001 * 109.50706 * 178.60064 * 13 12 11 28 28 H 1.08998 * 109.50493 * 183.22100 * 14 13 12 29 29 H 1.08997 * 109.51044 * 63.08276 * 14 13 12 30 30 H 1.09002 * 109.46961 * 56.05356 * 16 15 14 31 31 H 1.08999 * 109.47291 * 176.05162 * 16 15 14 32 32 H 1.09010 * 109.21925 * 333.92184 * 17 16 15 33 33 H 1.09000 * 109.39227 * 289.14637 * 18 17 16 34 34 H 1.08995 * 109.39419 * 48.85303 * 18 17 16 35 35 H 1.08999 * 109.57978 * 303.21194 * 19 18 17 36 36 H 1.09001 * 109.57554 * 182.82816 * 19 18 17 37 37 H 1.08998 * 109.57050 * 293.45315 * 21 20 19 38 38 H 1.08995 * 109.57387 * 173.07323 * 21 20 19 39 39 H 1.09005 * 109.38798 * 311.14326 * 22 17 16 40 40 H 1.08991 * 109.39439 * 70.94744 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4100 2.0965 -1.3965 5 1 1.4924 2.6262 0.7847 6 1 3.5872 1.4169 0.6117 7 6 2.0046 -1.1940 -0.0005 8 1 1.4685 -2.1271 0.0911 9 6 3.5061 -1.1970 -0.1290 10 1 3.8301 -0.2870 -0.6341 11 6 4.1391 -1.2618 1.2635 12 8 5.5611 -1.3396 1.1321 13 6 6.0086 -2.4695 0.3784 14 6 5.3947 -2.4170 -1.0231 15 7 3.9297 -2.3689 -0.9091 16 6 3.2980 -2.3747 -2.2354 17 6 3.6909 -1.1049 -2.9930 18 6 2.5198 -0.6554 -3.8616 19 6 2.7861 0.7482 -4.4122 20 16 4.2529 0.6897 -5.4838 21 6 5.4911 -0.0811 -4.3993 22 6 4.9202 -1.3912 -3.8502 23 1 -0.4851 0.8400 0.0004 24 1 3.8739 -0.3664 1.8258 25 1 3.7727 -2.1435 1.7891 26 1 5.6972 -3.3869 0.8780 27 1 7.0956 -2.4477 0.3005 28 1 5.6872 -3.3058 -1.5822 29 1 5.7487 -1.5265 -1.5425 30 1 3.6329 -3.2490 -2.7935 31 1 2.2145 -2.4094 -2.1216 32 1 3.9282 -0.3184 -2.2765 33 1 2.3959 -1.3519 -4.6908 34 1 1.6092 -0.6423 -3.2628 35 1 2.9643 1.4368 -3.5863 36 1 1.9248 1.0832 -4.9901 37 1 5.7221 0.5914 -3.5732 38 1 6.3972 -0.2878 -4.9688 39 1 5.6765 -1.8892 -3.2433 40 1 4.6394 -2.0382 -4.6811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:41 Heat of formation + Delta-G solvation = -64.151228 kcal Electronic energy + Delta-G solvation = -20796.339726 eV Core-core repulsion = 17929.151060 eV Total energy + Delta-G solvation = -2867.188666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95228 -38.56964 -35.93342 -34.74526 -32.67224 -32.12318 -30.43539 -27.82138 -26.74164 -24.40504 -23.94966 -23.50958 -21.78108 -20.40431 -19.01935 -17.97364 -17.38266 -17.00521 -16.41349 -15.98093 -15.90936 -15.57384 -15.43577 -15.14958 -14.69922 -14.55121 -14.40960 -14.20928 -13.79108 -13.58887 -13.07764 -13.06137 -12.70656 -12.49042 -12.40653 -12.31011 -12.01065 -11.87381 -11.66230 -11.47632 -11.19556 -11.12966 -10.90765 -10.68817 -10.36661 -8.98278 -8.69456 -8.33777 -6.35192 0.77605 1.20260 1.28973 1.36140 1.49691 2.24802 2.89773 3.10097 3.27055 3.59528 3.77189 3.82802 3.99162 4.14775 4.20098 4.23402 4.32936 4.37445 4.42461 4.46212 4.57060 4.62560 4.70257 4.74642 4.79792 4.87945 4.89080 4.95380 5.00223 5.05350 5.13897 5.20423 5.37447 5.44462 5.52114 6.03142 6.25095 6.38752 6.64711 6.75357 7.30872 8.82105 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.009879 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.777940 B = 2833.531886 C = 3862.563311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.040 3.960 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.493 4.493 8 H 0.042 0.958 9 C 0.162 3.838 10 H 0.007 0.993 11 C 0.071 3.929 12 O -0.414 6.414 13 C 0.058 3.942 14 C 0.010 3.990 15 N -0.536 5.536 16 C 0.081 3.919 17 C -0.123 4.123 18 C -0.104 4.104 19 C -0.076 4.076 20 S -0.286 6.286 21 C -0.073 4.073 22 C -0.113 4.113 23 H 0.266 0.734 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 -2.624 -8.109 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.160 4.160 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.054 3.946 10 H 0.025 0.975 11 C -0.006 4.006 12 O -0.334 6.334 13 C -0.019 4.019 14 C -0.118 4.118 15 N -0.260 5.260 16 C -0.047 4.047 17 C -0.144 4.144 18 C -0.144 4.144 19 C -0.224 4.224 20 S -0.060 6.060 21 C -0.221 4.221 22 C -0.151 4.151 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.313 -2.448 -8.813 15.339 hybrid contribution -0.591 1.325 1.083 1.810 sum 11.722 -1.124 -7.730 14.087 Atomic orbital electron populations 1.69995 1.07626 1.27740 1.51792 1.25485 0.94986 1.01225 0.94288 0.86373 0.80157 0.81184 0.79053 1.19404 1.21208 1.17639 1.20790 0.90022 0.93022 1.49304 0.93981 1.20090 0.94364 0.88852 0.91287 0.97530 1.22966 0.78978 1.00617 0.98081 1.87852 1.22754 1.48211 1.74535 1.22865 0.99939 0.88601 0.90447 1.23052 0.88607 1.02011 0.98164 1.62435 1.06293 1.41721 1.15574 1.22024 0.99643 0.95618 0.87420 1.21704 0.95752 0.99654 0.97250 1.21637 0.98388 0.94726 0.99610 1.23420 0.98071 1.00512 1.00402 1.86544 1.10750 1.82213 1.26533 1.23500 0.98963 0.99062 1.00577 1.21991 0.96832 0.96259 1.00026 0.92479 0.90841 0.93511 0.92705 0.86153 0.87681 0.94134 0.89599 0.92416 0.93586 0.89451 0.92749 0.92351 0.87277 0.91156 0.85428 0.88856 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.96 21.45 0.30 -54.65 16 2 C 0.04 2.18 5.47 84.66 0.46 2.64 16 3 Si 0.91 42.69 26.58 68.60 1.82 44.52 16 4 H -0.27 -12.25 6.93 99.48 0.69 -11.56 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.25 -11.50 6.03 99.48 0.60 -10.90 16 7 C -0.49 -26.21 7.55 25.60 0.19 -26.01 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 9 C 0.16 7.21 1.14 44.18 0.05 7.26 16 10 H 0.01 0.34 3.45 -2.39 -0.01 0.33 16 11 C 0.07 3.02 6.08 72.01 0.44 3.46 16 12 O -0.41 -15.73 10.83 -148.98 -1.61 -17.34 16 13 C 0.06 1.68 7.01 72.02 0.50 2.18 16 14 C 0.01 0.28 4.25 86.32 0.37 0.64 16 15 N -0.54 -20.14 4.74 -874.38 -4.14 -24.28 16 16 C 0.08 2.82 4.91 86.30 0.42 3.24 16 17 C -0.12 -3.97 1.33 -11.08 -0.01 -3.98 16 18 C -0.10 -3.41 4.96 30.49 0.15 -3.26 16 19 C -0.08 -2.39 6.45 72.02 0.46 -1.92 16 20 S -0.29 -7.90 22.33 -56.49 -1.26 -9.16 16 21 C -0.07 -1.72 6.45 72.01 0.46 -1.26 16 22 C -0.11 -2.69 4.44 30.48 0.14 -2.56 16 23 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 24 H 0.07 3.25 7.02 -2.38 -0.02 3.23 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.11 2.37 8.01 -2.39 -0.02 2.35 16 29 H 0.04 1.18 5.75 -2.39 -0.01 1.17 16 30 H 0.09 2.46 7.77 -2.39 -0.02 2.44 16 31 H 0.06 2.45 6.44 -2.39 -0.02 2.43 16 32 H 0.05 1.79 5.33 -2.38 -0.01 1.77 16 33 H 0.09 2.51 8.06 -2.39 -0.02 2.49 16 34 H 0.05 2.15 7.81 -2.39 -0.02 2.13 16 35 H 0.06 2.08 7.97 -2.39 -0.02 2.06 16 36 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.09 1.98 5.19 -2.38 -0.01 1.97 16 40 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 Total: -1.00 -61.13 304.62 -0.36 -61.49 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.89 Total: 18.99 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 3.64 Total: -19.57 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -3.84 Total: -78.94 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.61 Total: -17.34 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.82 Total: 44.52 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.26 Total: -9.16 kcal Total: -61.13 -0.36 -61.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.659 kcal (2) G-P(sol) polarization free energy of solvation -61.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds