Wall clock time and date at job start Mon Mar 30 2020 05:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00181 * 2 1 4 4 H 1.48499 * 109.47021 * 269.99735 * 3 2 1 5 5 H 1.48497 * 109.47024 * 30.00382 * 3 2 1 6 6 H 1.48503 * 109.46909 * 150.00122 * 3 2 1 7 7 C 1.37877 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99981 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50571 * 59.91366 * 9 7 2 11 11 C 1.53097 * 109.54272 * 299.80596 * 9 7 2 12 12 O 1.43023 * 109.25775 * 183.19763 * 11 9 7 13 13 C 1.43016 * 113.74003 * 58.66762 * 12 11 9 14 14 C 1.53099 * 109.25518 * 301.33215 * 13 12 11 15 15 N 1.47012 * 109.50474 * 180.02562 * 9 7 2 16 16 C 1.46904 * 111.00117 * 302.36818 * 15 9 7 17 17 C 1.53001 * 109.46987 * 159.46881 * 16 15 9 18 18 H 1.09005 * 109.57076 * 309.15796 * 17 16 15 19 19 C 1.53096 * 109.57428 * 188.90136 * 17 16 15 20 20 C 1.52582 * 109.95481 * 177.16626 * 19 17 16 21 21 C 1.52577 * 110.72728 * 70.67762 * 20 19 17 22 22 C 1.53102 * 109.95492 * 289.32369 * 21 20 19 23 23 S 1.81742 * 109.57691 * 69.41377 * 17 16 15 24 24 H 0.97003 * 119.99655 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.50571 * 303.12678 * 11 9 7 26 26 H 1.08995 * 109.50633 * 63.21644 * 11 9 7 27 27 H 1.09003 * 109.50375 * 61.26227 * 13 12 11 28 28 H 1.08997 * 109.50590 * 181.35587 * 13 12 11 29 29 H 1.09004 * 109.50902 * 296.91248 * 14 13 12 30 30 H 1.09003 * 109.50196 * 176.78836 * 14 13 12 31 31 H 1.08998 * 109.47241 * 279.46599 * 16 15 9 32 32 H 1.09000 * 109.46563 * 39.47167 * 16 15 9 33 33 H 1.08993 * 109.38954 * 297.31456 * 19 17 16 34 34 H 1.09007 * 109.39201 * 57.02235 * 19 17 16 35 35 H 1.09005 * 109.22514 * 190.99985 * 20 19 17 36 36 H 1.08998 * 109.22955 * 310.35336 * 20 19 17 37 37 H 1.08995 * 109.39205 * 49.47011 * 21 20 19 38 38 H 1.09001 * 109.39164 * 169.17871 * 21 20 19 39 39 H 1.08999 * 109.57452 * 182.82923 * 22 21 20 40 40 H 1.08998 * 109.57685 * 303.08755 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6225 -2.5566 -0.8894 11 6 0.3743 -2.5844 1.2517 12 8 -0.2805 -3.8555 1.2835 13 6 0.6195 -4.9669 1.2845 14 6 1.4986 -4.9058 0.0325 15 7 2.2056 -3.6172 -0.0005 16 6 3.1058 -3.5408 -1.1589 17 6 4.3651 -4.3642 -0.8813 18 1 4.7833 -4.0777 0.0838 19 6 5.3971 -4.1106 -1.9833 20 6 6.6830 -4.8731 -1.6780 21 6 6.4761 -6.3742 -1.8568 22 6 5.5809 -6.9150 -0.7387 23 16 3.9447 -6.1323 -0.8621 24 1 -0.4850 0.8401 0.0004 25 1 0.9965 -2.4732 2.1398 26 1 -0.3719 -1.7903 1.2283 27 1 1.2488 -4.9249 2.1735 28 1 0.0501 -5.8963 1.2851 29 1 0.8742 -5.0017 -0.8558 30 1 2.2244 -5.7186 0.0575 31 1 2.5996 -3.9368 -2.0392 32 1 3.3829 -2.5015 -1.3357 33 1 4.9956 -4.4463 -2.9393 34 1 5.6134 -3.0436 -2.0379 35 1 7.4691 -4.5361 -2.3538 36 1 6.9840 -4.6722 -0.6499 37 1 6.0040 -6.5621 -2.8211 38 1 7.4415 -6.8791 -1.8235 39 1 5.4781 -7.9951 -0.8434 40 1 6.0247 -6.6825 0.2293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:58 Heat of formation + Delta-G solvation = -51.378365 kcal Electronic energy + Delta-G solvation = -19938.350374 eV Core-core repulsion = 17071.715580 eV Total energy + Delta-G solvation = -2866.634793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.61751 -36.95664 -35.06127 -33.18027 -31.60522 -29.81067 -28.35529 -26.08110 -25.11154 -23.47027 -22.24347 -20.96505 -20.68059 -19.18753 -16.74658 -16.58918 -15.55164 -15.17814 -14.99863 -14.69200 -14.44116 -13.84651 -13.82236 -13.59225 -13.37268 -13.31469 -13.01586 -12.30354 -12.22306 -12.12044 -11.43719 -11.13307 -11.04551 -10.90769 -10.86441 -10.76763 -10.62648 -10.51907 -10.30936 -10.08388 -9.64636 -9.17914 -9.07557 -8.67583 -8.34367 -7.37396 -7.19058 -6.14148 -4.18734 1.99421 2.79312 3.23905 3.31482 3.34391 4.30762 4.56128 4.73873 4.76581 4.97034 5.00677 5.18628 5.25783 5.30455 5.36696 5.56133 5.68997 5.71003 5.82129 5.88242 5.91958 5.97479 5.99313 6.07489 6.15266 6.22177 6.37539 6.50015 6.56593 6.58455 6.73177 6.93222 7.30601 7.52513 7.67708 7.87945 8.16904 8.22754 8.53477 8.87876 9.46521 10.93735 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.006608 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.964837 B = 4236.233685 C = 5495.150697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.188 3.812 10 H 0.008 0.992 11 C 0.070 3.930 12 O -0.406 6.406 13 C 0.070 3.930 14 C 0.006 3.994 15 N -0.530 5.530 16 C 0.076 3.924 17 C -0.035 4.035 18 H 0.094 0.906 19 C -0.118 4.118 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.108 4.108 23 S -0.250 6.250 24 H 0.265 0.735 25 H 0.033 0.967 26 H 0.122 0.878 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.466 -10.407 -2.424 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.082 3.918 10 H 0.025 0.975 11 C -0.006 4.006 12 O -0.325 6.325 13 C -0.007 4.007 14 C -0.124 4.124 15 N -0.255 5.255 16 C -0.054 4.054 17 C -0.164 4.164 18 H 0.113 0.887 19 C -0.157 4.157 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.255 4.255 23 S -0.022 6.022 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.139 0.861 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.399 -10.759 -2.027 14.429 hybrid contribution 1.433 1.367 -0.644 2.083 sum 10.832 -9.392 -2.672 14.584 Atomic orbital electron populations 1.69854 1.05928 1.27032 1.50126 1.24988 0.94940 0.99366 0.94818 0.86470 0.79803 0.82921 0.78112 1.20657 1.21086 1.19770 1.21049 0.93314 0.89306 1.51180 0.91537 1.19841 0.89561 0.88019 0.94420 0.97463 1.23093 0.97421 0.82867 0.97196 1.87901 1.33977 1.15571 1.95029 1.22409 0.91846 0.89994 0.96496 1.23256 0.97205 0.94253 0.97698 1.62223 1.20987 1.02318 1.39978 1.21938 0.91034 1.00416 0.91968 1.23430 0.99565 0.91396 1.01992 0.88744 1.21761 0.94275 1.01127 0.98546 1.21507 0.97925 0.94834 1.02172 1.21668 0.99329 0.95947 0.98744 1.23599 0.97695 1.02812 1.01389 1.87095 1.11316 1.06636 1.97110 0.92545 0.94892 0.86078 0.93583 0.90426 0.95603 0.88269 0.95120 0.87598 0.90936 0.90510 0.91481 0.91843 0.90997 0.91682 0.88764 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.37 55.43 0.63 -24.20 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 3 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.51 -13.45 7.64 -34.44 -0.26 -13.71 16 8 H 0.07 1.72 6.72 -52.48 -0.35 1.37 16 9 C 0.19 4.77 1.97 -68.75 -0.14 4.64 16 10 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 11 C 0.07 1.78 6.03 37.21 0.22 2.00 16 12 O -0.41 -9.59 10.83 -35.23 -0.38 -9.97 16 13 C 0.07 1.38 7.01 37.21 0.26 1.64 16 14 C 0.01 0.12 5.14 -3.71 -0.02 0.10 16 15 N -0.53 -11.48 4.45 -227.72 -1.01 -12.50 16 16 C 0.08 1.45 4.46 -3.82 -0.02 1.44 16 17 C -0.03 -0.54 2.73 -26.68 -0.07 -0.61 16 18 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 19 C -0.12 -1.50 5.03 -26.90 -0.14 -1.63 16 20 C -0.13 -1.34 5.61 -27.16 -0.15 -1.49 16 21 C -0.12 -1.18 5.76 -26.89 -0.15 -1.33 16 22 C -0.11 -1.21 6.45 37.21 0.24 -0.97 16 23 S -0.25 -3.67 17.73 -107.50 -1.91 -5.58 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.12 3.33 6.19 -51.93 -0.32 3.01 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.10 1.80 3.97 -24.35 -0.10 1.70 16 31 H 0.03 0.60 7.96 -51.93 -0.41 0.19 16 32 H 0.11 2.17 5.90 -51.93 -0.31 1.86 16 33 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.07 0.74 8.06 -51.93 -0.42 0.33 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -27.86 311.15 -9.85 -37.71 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.53 Total: 2.67 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.32 Total: -8.39 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: -0.38 Total: -36.69 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.38 Total: -9.97 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.91 Total: -5.58 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.86 -9.85 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.664 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds