Wall clock time and date at job start Mon Mar 30 2020 05:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00181 * 2 1 4 4 H 1.48499 * 109.47021 * 269.99735 * 3 2 1 5 5 H 1.48497 * 109.47024 * 30.00382 * 3 2 1 6 6 H 1.48503 * 109.46909 * 150.00122 * 3 2 1 7 7 C 1.37877 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99981 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50571 * 59.91366 * 9 7 2 11 11 C 1.53097 * 109.54272 * 299.80596 * 9 7 2 12 12 O 1.43023 * 109.25775 * 183.19763 * 11 9 7 13 13 C 1.43016 * 113.74003 * 58.66762 * 12 11 9 14 14 C 1.53099 * 109.25518 * 301.33215 * 13 12 11 15 15 N 1.47012 * 109.50474 * 180.02562 * 9 7 2 16 16 C 1.46904 * 111.00117 * 302.36818 * 15 9 7 17 17 C 1.53001 * 109.46987 * 159.46881 * 16 15 9 18 18 H 1.09005 * 109.57076 * 309.15796 * 17 16 15 19 19 C 1.53096 * 109.57428 * 188.90136 * 17 16 15 20 20 C 1.52582 * 109.95481 * 177.16626 * 19 17 16 21 21 C 1.52577 * 110.72728 * 70.67762 * 20 19 17 22 22 C 1.53102 * 109.95492 * 289.32369 * 21 20 19 23 23 S 1.81742 * 109.57691 * 69.41377 * 17 16 15 24 24 H 0.97003 * 119.99655 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.50571 * 303.12678 * 11 9 7 26 26 H 1.08995 * 109.50633 * 63.21644 * 11 9 7 27 27 H 1.09003 * 109.50375 * 61.26227 * 13 12 11 28 28 H 1.08997 * 109.50590 * 181.35587 * 13 12 11 29 29 H 1.09004 * 109.50902 * 296.91248 * 14 13 12 30 30 H 1.09003 * 109.50196 * 176.78836 * 14 13 12 31 31 H 1.08998 * 109.47241 * 279.46599 * 16 15 9 32 32 H 1.09000 * 109.46563 * 39.47167 * 16 15 9 33 33 H 1.08993 * 109.38954 * 297.31456 * 19 17 16 34 34 H 1.09007 * 109.39201 * 57.02235 * 19 17 16 35 35 H 1.09005 * 109.22514 * 190.99985 * 20 19 17 36 36 H 1.08998 * 109.22955 * 310.35336 * 20 19 17 37 37 H 1.08995 * 109.39205 * 49.47011 * 21 20 19 38 38 H 1.09001 * 109.39164 * 169.17871 * 21 20 19 39 39 H 1.08999 * 109.57452 * 182.82923 * 22 21 20 40 40 H 1.08998 * 109.57685 * 303.08755 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6225 -2.5566 -0.8894 11 6 0.3743 -2.5844 1.2517 12 8 -0.2805 -3.8555 1.2835 13 6 0.6195 -4.9669 1.2845 14 6 1.4986 -4.9058 0.0325 15 7 2.2056 -3.6172 -0.0005 16 6 3.1058 -3.5408 -1.1589 17 6 4.3651 -4.3642 -0.8813 18 1 4.7833 -4.0777 0.0838 19 6 5.3971 -4.1106 -1.9833 20 6 6.6830 -4.8731 -1.6780 21 6 6.4761 -6.3742 -1.8568 22 6 5.5809 -6.9150 -0.7387 23 16 3.9447 -6.1323 -0.8621 24 1 -0.4850 0.8401 0.0004 25 1 0.9965 -2.4732 2.1398 26 1 -0.3719 -1.7903 1.2283 27 1 1.2488 -4.9249 2.1735 28 1 0.0501 -5.8963 1.2851 29 1 0.8742 -5.0017 -0.8558 30 1 2.2244 -5.7186 0.0575 31 1 2.5996 -3.9368 -2.0392 32 1 3.3829 -2.5015 -1.3357 33 1 4.9956 -4.4463 -2.9393 34 1 5.6134 -3.0436 -2.0379 35 1 7.4691 -4.5361 -2.3538 36 1 6.9840 -4.6722 -0.6499 37 1 6.0040 -6.5621 -2.8211 38 1 7.4415 -6.8791 -1.8235 39 1 5.4781 -7.9951 -0.8434 40 1 6.0247 -6.6825 0.2293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:58 Heat of formation + Delta-G solvation = -68.637833 kcal Electronic energy + Delta-G solvation = -19939.098800 eV Core-core repulsion = 17071.715580 eV Total energy + Delta-G solvation = -2867.383220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.40350 -38.07568 -36.65025 -35.12990 -32.88967 -31.68355 -29.62393 -27.67546 -26.92960 -24.80509 -24.02174 -22.34646 -21.64073 -20.99608 -18.65311 -17.84521 -17.34281 -16.94022 -16.37065 -16.06234 -16.01217 -15.53899 -15.26385 -14.96050 -14.86758 -14.58402 -14.28482 -14.02520 -13.55627 -13.33190 -12.99568 -12.83374 -12.66899 -12.47617 -12.22496 -12.11062 -12.04868 -11.93649 -11.79093 -11.75856 -11.07503 -10.99650 -10.71517 -10.53210 -10.09171 -9.12142 -8.46995 -8.19260 -6.31816 0.85532 1.42111 1.43697 1.54436 1.69134 2.38511 3.02666 3.06065 3.31394 3.80288 3.84999 3.95163 4.12105 4.17805 4.19846 4.31526 4.35100 4.44654 4.51041 4.62200 4.67272 4.74841 4.82365 4.85573 4.91143 4.95281 5.01889 5.07235 5.11989 5.14353 5.18195 5.29740 5.39156 5.49403 5.63061 5.95860 6.22826 6.41958 6.60991 6.81883 7.37651 8.88531 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.006608 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.964837 B = 4236.233685 C = 5495.150697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.195 3.805 10 H -0.039 1.039 11 C 0.083 3.917 12 O -0.421 6.421 13 C 0.063 3.937 14 C 0.008 3.992 15 N -0.532 5.532 16 C 0.079 3.921 17 C -0.023 4.023 18 H 0.084 0.916 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.092 4.092 23 S -0.288 6.288 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.008 0.992 30 H 0.125 0.875 31 H 0.020 0.980 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.112 -11.581 -2.407 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.087 0.913 9 C 0.088 3.912 10 H -0.021 1.021 11 C 0.006 3.994 12 O -0.340 6.340 13 C -0.013 4.013 14 C -0.122 4.122 15 N -0.256 5.256 16 C -0.050 4.050 17 C -0.152 4.152 18 H 0.103 0.897 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.239 4.239 23 S -0.060 6.060 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.026 0.974 30 H 0.142 0.858 31 H 0.038 0.962 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.058 -11.955 -2.014 17.099 hybrid contribution 0.632 1.596 -0.664 1.841 sum 12.690 -10.359 -2.678 16.599 Atomic orbital electron populations 1.69998 1.07453 1.27865 1.50785 1.25818 0.95693 1.02810 0.94274 0.85415 0.78653 0.78477 0.78291 1.20028 1.20881 1.18871 1.21274 0.93459 0.90022 1.51191 0.91341 1.19600 0.89674 0.89528 0.92408 1.02122 1.22736 0.96438 0.83350 0.96881 1.87856 1.35226 1.15828 1.95115 1.22741 0.92104 0.89818 0.96681 1.23363 0.97645 0.94167 0.97034 1.62255 1.20226 1.02047 1.41106 1.21897 0.92083 1.00224 0.90807 1.23190 0.97992 0.91530 1.02537 0.89748 1.21754 0.94690 1.01654 0.97299 1.21496 0.96821 0.95058 1.02668 1.21665 1.00257 0.95500 0.97941 1.23678 0.94597 1.03210 1.02401 1.87002 1.15614 1.06302 1.97114 0.92501 0.95220 0.88750 0.92673 0.86905 0.97361 0.85787 0.96167 0.89482 0.91027 0.90591 0.89509 0.91858 0.91188 0.88915 0.86982 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.06 11.37 21.45 0.24 -52.82 16 2 C 0.01 0.73 5.31 84.65 0.45 1.18 16 3 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.52 -28.27 7.64 25.60 0.20 -28.08 16 8 H 0.07 3.61 6.72 -2.91 -0.02 3.59 16 9 C 0.20 10.35 1.97 44.18 0.09 10.43 16 10 H -0.04 -2.36 8.14 -2.39 -0.02 -2.38 16 11 C 0.08 4.34 6.03 72.01 0.43 4.78 16 12 O -0.42 -20.28 10.83 -148.98 -1.61 -21.89 16 13 C 0.06 2.45 7.01 72.02 0.50 2.96 16 14 C 0.01 0.30 5.14 86.31 0.44 0.75 16 15 N -0.53 -23.59 4.45 -874.36 -3.89 -27.49 16 16 C 0.08 3.10 4.46 86.30 0.39 3.49 16 17 C -0.02 -0.71 2.73 30.63 0.08 -0.63 16 18 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 19 C -0.11 -2.74 5.03 30.49 0.15 -2.59 16 20 C -0.12 -2.21 5.61 30.32 0.17 -2.04 16 21 C -0.11 -1.85 5.76 30.49 0.18 -1.67 16 22 C -0.09 -1.75 6.45 72.02 0.46 -1.28 16 23 S -0.29 -8.02 17.73 -56.49 -1.00 -9.02 16 24 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.09 5.45 6.19 -2.39 -0.01 5.44 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 29 H 0.01 0.35 8.13 -2.39 -0.02 0.33 16 30 H 0.13 4.39 3.97 -19.92 -0.08 4.31 16 31 H 0.02 0.82 7.96 -2.39 -0.02 0.80 16 32 H 0.09 3.70 5.90 -2.39 -0.01 3.69 16 33 H 0.07 1.73 8.06 -2.39 -0.02 1.71 16 34 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 37 H 0.07 1.20 8.06 -2.39 -0.02 1.18 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -61.96 311.15 0.24 -61.72 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.93 Total: 17.58 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 3.55 Total: -12.71 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.65 Total: -80.30 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.61 Total: -21.89 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.00 Total: -9.02 kcal Total: -61.96 0.24 -61.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.913 kcal (2) G-P(sol) polarization free energy of solvation -61.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds