Wall clock time and date at job start Mon Mar 30 2020 05:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99626 * 2 1 4 4 H 1.48498 * 109.47027 * 275.55328 * 3 2 1 5 5 H 1.48504 * 109.47140 * 35.55566 * 3 2 1 6 6 H 1.48496 * 109.46976 * 155.55265 * 3 2 1 7 7 C 1.37875 * 120.00452 * 180.27521 * 2 1 3 8 8 H 1.08002 * 119.99636 * 353.46685 * 7 2 1 9 9 C 1.50700 * 120.00124 * 173.46860 * 7 2 1 10 10 H 1.09001 * 109.50811 * 331.50279 * 9 7 2 11 11 C 1.53093 * 109.50611 * 91.59012 * 9 7 2 12 12 O 1.43021 * 109.25859 * 176.77936 * 11 9 7 13 13 C 1.43011 * 113.74023 * 301.33513 * 12 11 9 14 14 C 1.53096 * 109.26113 * 58.66776 * 13 12 11 15 15 N 1.47011 * 109.50626 * 211.37662 * 9 7 2 16 16 C 1.46899 * 111.00198 * 57.66819 * 15 9 7 17 17 C 1.52997 * 109.46877 * 78.34959 * 16 15 9 18 18 H 1.09005 * 109.58042 * 52.23381 * 17 16 15 19 19 C 1.53098 * 109.57760 * 172.49058 * 17 16 15 20 20 C 1.52582 * 109.95627 * 182.82868 * 19 17 16 21 21 C 1.52578 * 110.72949 * 289.32628 * 20 19 17 22 22 C 1.53096 * 109.95517 * 70.67283 * 21 20 19 23 23 S 1.81740 * 108.84453 * 296.97623 * 22 21 20 24 24 H 0.96996 * 120.00251 * 359.72099 * 1 2 3 25 25 H 1.08992 * 109.51015 * 296.71600 * 11 9 7 26 26 H 1.08998 * 109.50689 * 56.81014 * 11 9 7 27 27 H 1.08999 * 109.50468 * 178.60302 * 13 12 11 28 28 H 1.08999 * 109.50579 * 298.68577 * 13 12 11 29 29 H 1.08994 * 109.50990 * 63.08190 * 14 13 12 30 30 H 1.09002 * 109.51129 * 183.17499 * 14 13 12 31 31 H 1.09007 * 109.46962 * 198.34762 * 16 15 9 32 32 H 1.08996 * 109.47214 * 318.34591 * 16 15 9 33 33 H 1.08996 * 109.39196 * 302.97914 * 19 17 16 34 34 H 1.09002 * 109.38605 * 62.68416 * 19 17 16 35 35 H 1.09003 * 109.22694 * 49.64983 * 20 19 17 36 36 H 1.09002 * 109.22565 * 169.00463 * 20 19 17 37 37 H 1.08999 * 109.39316 * 190.82770 * 21 20 19 38 38 H 1.09002 * 109.38975 * 310.62668 * 21 20 19 39 39 H 1.08995 * 109.57564 * 56.78763 * 22 21 20 40 40 H 1.09003 * 109.57442 * 177.04258 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.3792 2.1143 -1.3935 5 1 1.5101 2.6160 0.8142 6 1 3.6003 1.4093 0.5794 7 6 2.0046 -1.1940 -0.0057 8 1 1.4699 -2.1268 0.0962 9 6 3.5043 -1.1974 -0.1542 10 1 3.8156 -0.3221 -0.7242 11 6 4.1552 -1.1634 1.2310 12 8 5.5759 -1.2426 1.0868 13 6 6.0208 -2.4191 0.4062 14 6 5.3888 -2.4658 -0.9874 15 7 3.9251 -2.4176 -0.8580 16 6 3.2767 -2.5175 -2.1723 17 6 3.9875 -1.5935 -3.1631 18 1 5.0582 -1.7973 -3.1492 19 6 3.4382 -1.8324 -4.5721 20 6 4.1898 -0.9655 -5.5779 21 6 3.8241 0.5054 -5.4027 22 6 4.4223 1.0409 -4.0991 23 16 3.6881 0.1391 -2.7024 24 1 -0.4850 0.8400 0.0041 25 1 3.8918 -0.2332 1.7343 26 1 3.8010 -2.0091 1.8205 27 1 7.1065 -2.3969 0.3129 28 1 5.7221 -3.3017 0.9718 29 1 5.7307 -1.6112 -1.5710 30 1 5.6802 -3.3889 -1.4886 31 1 3.3346 -3.5460 -2.5288 32 1 2.2313 -2.2216 -2.0851 33 1 3.5624 -2.8827 -4.8356 34 1 2.3786 -1.5777 -4.5954 35 1 5.2623 -1.0891 -5.4276 36 1 3.9310 -1.2818 -6.5884 37 1 4.2161 1.0784 -6.2430 38 1 2.7393 0.6072 -5.3700 39 1 5.5018 0.8907 -4.1039 40 1 4.2019 2.1043 -4.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:01 Heat of formation + Delta-G solvation = -41.375846 kcal Electronic energy + Delta-G solvation = -20721.872966 eV Core-core repulsion = 17855.671915 eV Total energy + Delta-G solvation = -2866.201052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.01479 -36.88743 -35.26069 -32.84537 -31.35576 -30.44252 -28.31678 -26.25463 -25.11260 -23.27804 -22.22754 -21.54712 -20.52325 -18.85486 -17.02523 -16.44330 -15.79316 -15.37095 -14.90389 -14.65826 -14.36117 -14.02115 -13.87022 -13.52216 -13.40154 -13.27562 -12.80273 -12.39722 -12.26364 -12.02368 -11.54418 -11.31004 -11.17299 -10.95708 -10.73982 -10.67393 -10.54009 -10.29313 -9.92377 -9.88350 -9.69941 -9.34041 -8.91031 -8.80702 -8.34052 -7.42628 -6.80940 -6.07431 -4.06707 2.23053 3.07250 3.39620 3.49281 3.52106 4.48191 4.59959 4.71504 4.82819 4.91502 5.00865 5.22960 5.30255 5.42129 5.45777 5.58793 5.60351 5.73354 5.75812 5.82093 5.90697 5.97179 6.05198 6.09268 6.10501 6.18078 6.25278 6.34933 6.39843 6.45868 6.54995 6.69280 6.98885 7.20942 7.44559 7.92384 7.96664 8.03978 8.64771 9.01717 9.57827 11.04310 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.010898 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.669129 B = 2568.715776 C = 3417.356081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.091 3.909 3 Si 0.846 3.154 4 H -0.253 1.253 5 H -0.290 1.290 6 H -0.256 1.256 7 C -0.509 4.509 8 H 0.079 0.921 9 C 0.140 3.860 10 H 0.054 0.946 11 C 0.065 3.935 12 O -0.403 6.403 13 C 0.070 3.930 14 C 0.009 3.991 15 N -0.522 5.522 16 C 0.076 3.924 17 C -0.097 4.097 18 H 0.081 0.919 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.130 4.130 23 S -0.187 6.187 24 H 0.264 0.736 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.821 -2.105 -9.048 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.113 4.113 3 Si 0.674 3.326 4 H -0.179 1.179 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.546 4.546 8 H 0.097 0.903 9 C 0.032 3.968 10 H 0.071 0.929 11 C -0.011 4.011 12 O -0.322 6.322 13 C -0.008 4.008 14 C -0.119 4.119 15 N -0.245 5.245 16 C -0.053 4.053 17 C -0.227 4.227 18 H 0.099 0.901 19 C -0.152 4.152 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.277 4.277 23 S 0.041 5.959 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.137 -1.821 -7.780 12.138 hybrid contribution 1.100 1.008 -1.672 2.241 sum 10.237 -0.813 -9.452 13.957 Atomic orbital electron populations 1.69895 1.06276 1.26951 1.49742 1.24836 0.94429 0.98505 0.93536 0.87200 0.81120 0.84621 0.79651 1.17878 1.21702 1.18060 1.20701 0.88195 0.94750 1.50999 0.90286 1.20804 0.96909 0.88039 0.91081 0.92913 1.23303 0.77553 1.01165 0.99112 1.87869 1.24661 1.42040 1.77620 1.22445 0.97634 0.88829 0.91881 1.22829 0.91060 1.00342 0.97699 1.62467 1.03605 1.40937 1.17479 1.22167 1.01372 0.96056 0.85726 1.24263 1.03203 0.96097 0.99135 0.90091 1.21700 1.01112 0.99636 0.92789 1.21495 1.00207 0.95132 0.99387 1.21639 1.01811 0.95752 0.96298 1.23696 1.02374 1.03277 0.98364 1.88560 1.78787 1.02419 1.26174 0.92653 0.89701 0.93302 0.90106 0.93275 0.94070 0.91439 0.91244 0.87148 0.91419 0.90390 0.92390 0.91695 0.92046 0.90776 0.91066 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 2 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 3 Si 0.85 21.22 24.39 -169.99 -4.15 17.08 16 4 H -0.25 -6.17 6.39 56.52 0.36 -5.81 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -6.36 5.71 56.52 0.32 -6.04 16 7 C -0.51 -13.72 7.30 -34.44 -0.25 -13.98 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.14 3.28 0.94 -68.76 -0.06 3.22 16 10 H 0.05 1.29 2.46 -26.18 -0.06 1.23 16 11 C 0.07 1.49 5.99 37.21 0.22 1.71 16 12 O -0.40 -8.52 10.83 -35.23 -0.38 -8.91 16 13 C 0.07 1.20 7.01 37.21 0.26 1.46 16 14 C 0.01 0.16 4.71 -3.71 -0.02 0.15 16 15 N -0.52 -10.70 4.74 -227.73 -1.08 -11.78 16 16 C 0.08 1.44 5.04 -3.83 -0.02 1.42 16 17 C -0.10 -1.62 1.99 -26.68 -0.05 -1.67 16 18 H 0.08 1.30 5.89 -51.93 -0.31 0.99 16 19 C -0.11 -1.57 5.04 -26.89 -0.14 -1.71 16 20 C -0.12 -1.52 5.61 -27.16 -0.15 -1.67 16 21 C -0.12 -1.52 5.75 -26.90 -0.15 -1.67 16 22 C -0.13 -1.99 6.45 37.21 0.24 -1.75 16 23 S -0.19 -3.68 14.63 -107.50 -1.57 -5.25 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.08 2.00 6.44 -51.93 -0.33 1.66 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.75 6.09 -51.93 -0.32 0.43 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.11 2.47 6.48 -51.93 -0.34 2.13 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 35 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 298.37 15.07 4.50 4.50 Total: -1.00 -29.53 298.37 -8.65 -38.18 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.52 Total: 3.93 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.22 Total: -12.05 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.31 Total: -37.48 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.38 Total: -8.91 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.15 Total: 17.08 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.57 Total: -5.25 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.53 -8.65 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.193 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds