Wall clock time and date at job start Mon Mar 30 2020 05:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99626 * 2 1 4 4 H 1.48498 * 109.47027 * 275.55328 * 3 2 1 5 5 H 1.48504 * 109.47140 * 35.55566 * 3 2 1 6 6 H 1.48496 * 109.46976 * 155.55265 * 3 2 1 7 7 C 1.37875 * 120.00452 * 180.27521 * 2 1 3 8 8 H 1.08002 * 119.99636 * 353.46685 * 7 2 1 9 9 C 1.50700 * 120.00124 * 173.46860 * 7 2 1 10 10 H 1.09001 * 109.50811 * 331.50279 * 9 7 2 11 11 C 1.53093 * 109.50611 * 91.59012 * 9 7 2 12 12 O 1.43021 * 109.25859 * 176.77936 * 11 9 7 13 13 C 1.43011 * 113.74023 * 301.33513 * 12 11 9 14 14 C 1.53096 * 109.26113 * 58.66776 * 13 12 11 15 15 N 1.47011 * 109.50626 * 211.37662 * 9 7 2 16 16 C 1.46899 * 111.00198 * 57.66819 * 15 9 7 17 17 C 1.52997 * 109.46877 * 78.34959 * 16 15 9 18 18 H 1.09005 * 109.58042 * 52.23381 * 17 16 15 19 19 C 1.53098 * 109.57760 * 172.49058 * 17 16 15 20 20 C 1.52582 * 109.95627 * 182.82868 * 19 17 16 21 21 C 1.52578 * 110.72949 * 289.32628 * 20 19 17 22 22 C 1.53096 * 109.95517 * 70.67283 * 21 20 19 23 23 S 1.81740 * 108.84453 * 296.97623 * 22 21 20 24 24 H 0.96996 * 120.00251 * 359.72099 * 1 2 3 25 25 H 1.08992 * 109.51015 * 296.71600 * 11 9 7 26 26 H 1.08998 * 109.50689 * 56.81014 * 11 9 7 27 27 H 1.08999 * 109.50468 * 178.60302 * 13 12 11 28 28 H 1.08999 * 109.50579 * 298.68577 * 13 12 11 29 29 H 1.08994 * 109.50990 * 63.08190 * 14 13 12 30 30 H 1.09002 * 109.51129 * 183.17499 * 14 13 12 31 31 H 1.09007 * 109.46962 * 198.34762 * 16 15 9 32 32 H 1.08996 * 109.47214 * 318.34591 * 16 15 9 33 33 H 1.08996 * 109.39196 * 302.97914 * 19 17 16 34 34 H 1.09002 * 109.38605 * 62.68416 * 19 17 16 35 35 H 1.09003 * 109.22694 * 49.64983 * 20 19 17 36 36 H 1.09002 * 109.22565 * 169.00463 * 20 19 17 37 37 H 1.08999 * 109.39316 * 190.82770 * 21 20 19 38 38 H 1.09002 * 109.38975 * 310.62668 * 21 20 19 39 39 H 1.08995 * 109.57564 * 56.78763 * 22 21 20 40 40 H 1.09003 * 109.57442 * 177.04258 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.3792 2.1143 -1.3935 5 1 1.5101 2.6160 0.8142 6 1 3.6003 1.4093 0.5794 7 6 2.0046 -1.1940 -0.0057 8 1 1.4699 -2.1268 0.0962 9 6 3.5043 -1.1974 -0.1542 10 1 3.8156 -0.3221 -0.7242 11 6 4.1552 -1.1634 1.2310 12 8 5.5759 -1.2426 1.0868 13 6 6.0208 -2.4191 0.4062 14 6 5.3888 -2.4658 -0.9874 15 7 3.9251 -2.4176 -0.8580 16 6 3.2767 -2.5175 -2.1723 17 6 3.9875 -1.5935 -3.1631 18 1 5.0582 -1.7973 -3.1492 19 6 3.4382 -1.8324 -4.5721 20 6 4.1898 -0.9655 -5.5779 21 6 3.8241 0.5054 -5.4027 22 6 4.4223 1.0409 -4.0991 23 16 3.6881 0.1391 -2.7024 24 1 -0.4850 0.8400 0.0041 25 1 3.8918 -0.2332 1.7343 26 1 3.8010 -2.0091 1.8205 27 1 7.1065 -2.3969 0.3129 28 1 5.7221 -3.3017 0.9718 29 1 5.7307 -1.6112 -1.5710 30 1 5.6802 -3.3889 -1.4886 31 1 3.3346 -3.5460 -2.5288 32 1 2.2313 -2.2216 -2.0851 33 1 3.5624 -2.8827 -4.8356 34 1 2.3786 -1.5777 -4.5954 35 1 5.2623 -1.0891 -5.4276 36 1 3.9310 -1.2818 -6.5884 37 1 4.2161 1.0784 -6.2430 38 1 2.7393 0.6072 -5.3700 39 1 5.5018 0.8907 -4.1039 40 1 4.2019 2.1043 -4.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:00 Heat of formation + Delta-G solvation = -62.479029 kcal Electronic energy + Delta-G solvation = -20722.788069 eV Core-core repulsion = 17855.671915 eV Total energy + Delta-G solvation = -2867.116154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60429 -38.12192 -36.71994 -34.84898 -32.71538 -32.19128 -29.65232 -27.71917 -26.91863 -24.62241 -23.86941 -23.01903 -21.58167 -20.48660 -19.08882 -17.83384 -17.42342 -16.90382 -16.34877 -16.13094 -15.85432 -15.66565 -15.37026 -15.06059 -14.75475 -14.52191 -14.49215 -14.12116 -13.61381 -13.41904 -12.97912 -12.91985 -12.50090 -12.46421 -12.36133 -12.06122 -11.82983 -11.81498 -11.70797 -11.47282 -11.24245 -11.14714 -10.79593 -10.41179 -10.12374 -8.96780 -8.35529 -8.26504 -6.26384 0.81560 1.39074 1.43752 1.52029 1.79340 2.39169 2.96889 3.14943 3.29971 3.70573 3.84801 3.90387 4.08955 4.16229 4.21181 4.25168 4.39575 4.41769 4.50253 4.60652 4.64348 4.70823 4.75816 4.78432 4.86604 4.93975 5.00240 5.02311 5.05102 5.11723 5.12962 5.29154 5.38661 5.44627 5.54309 6.06537 6.27317 6.39725 6.68966 6.81778 7.40940 8.89281 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.010898 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.669129 B = 2568.715776 C = 3417.356081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.047 3.953 3 Si 0.903 3.097 4 H -0.245 1.245 5 H -0.296 1.296 6 H -0.253 1.253 7 C -0.493 4.493 8 H 0.036 0.964 9 C 0.143 3.857 10 H 0.057 0.943 11 C 0.070 3.930 12 O -0.412 6.412 13 C 0.061 3.939 14 C 0.012 3.988 15 N -0.536 5.536 16 C 0.078 3.922 17 C -0.070 4.070 18 H 0.098 0.902 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.106 4.106 23 S -0.292 6.292 24 H 0.263 0.737 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.120 0.880 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.988 -2.614 -11.302 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.152 4.152 3 Si 0.730 3.270 4 H -0.170 1.170 5 H -0.223 1.223 6 H -0.177 1.177 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.034 3.966 10 H 0.074 0.926 11 C -0.007 4.007 12 O -0.332 6.332 13 C -0.016 4.016 14 C -0.116 4.116 15 N -0.260 5.260 16 C -0.051 4.051 17 C -0.200 4.200 18 H 0.116 0.884 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.254 4.254 23 S -0.066 6.066 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.329 -2.351 -10.043 16.075 hybrid contribution 0.172 1.033 -1.036 1.473 sum 12.501 -1.319 -11.080 16.756 Atomic orbital electron populations 1.70019 1.07850 1.27560 1.52403 1.25411 0.94824 1.01376 0.93615 0.86314 0.79849 0.81057 0.79827 1.17043 1.22324 1.17696 1.20767 0.90409 0.92743 1.49226 0.94610 1.20620 0.94180 0.89868 0.91935 0.92648 1.23013 0.79045 1.00193 0.98472 1.87843 1.22895 1.44104 1.78344 1.22815 0.99788 0.87572 0.91416 1.22933 0.88581 1.01950 0.98178 1.62371 1.05972 1.39206 1.18404 1.22072 0.98984 0.97984 0.86033 1.24132 1.03686 0.92373 0.99816 0.88372 1.21702 1.00030 1.01658 0.91672 1.21473 1.00490 0.93767 0.99880 1.21643 1.00765 0.97037 0.95904 1.23675 1.02796 1.02207 0.96689 1.88706 1.80071 1.06911 1.30909 0.92775 0.91131 0.94023 0.86215 0.92778 0.94275 0.87931 0.88503 0.91713 0.88913 0.92530 0.91151 0.89279 0.89105 0.92505 0.89397 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 2 C 0.05 2.73 5.47 84.65 0.46 3.19 16 3 Si 0.90 45.57 24.39 68.60 1.67 47.25 16 4 H -0.25 -11.93 6.39 99.48 0.64 -11.30 16 5 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 6 H -0.25 -12.47 5.71 99.48 0.57 -11.90 16 7 C -0.49 -27.82 7.30 25.60 0.19 -27.64 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 9 C 0.14 6.76 0.94 44.18 0.04 6.80 16 10 H 0.06 2.71 2.46 -18.76 -0.05 2.66 16 11 C 0.07 3.21 5.99 72.01 0.43 3.64 16 12 O -0.41 -16.79 10.83 -148.98 -1.61 -18.41 16 13 C 0.06 1.90 7.01 72.01 0.50 2.40 16 14 C 0.01 0.37 4.71 86.31 0.41 0.77 16 15 N -0.54 -21.48 4.74 -874.41 -4.14 -25.62 16 16 C 0.08 2.89 5.04 86.30 0.43 3.33 16 17 C -0.07 -2.20 1.99 30.63 0.06 -2.14 16 18 H 0.10 2.75 5.89 -2.38 -0.01 2.74 16 19 C -0.11 -2.79 5.04 30.49 0.15 -2.63 16 20 C -0.12 -2.38 5.61 30.32 0.17 -2.21 16 21 C -0.11 -2.62 5.75 30.49 0.18 -2.44 16 22 C -0.11 -2.98 6.45 72.01 0.46 -2.51 16 23 S -0.29 -11.28 14.63 -56.49 -0.83 -12.11 16 24 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 25 H 0.07 3.37 6.44 -2.39 -0.02 3.36 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.28 6.09 -2.39 -0.01 1.26 16 30 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 32 H 0.06 3.01 6.48 -2.39 -0.02 2.99 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.67 8.06 -2.39 -0.02 1.65 16 35 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -67.73 298.37 -0.36 -68.09 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.76 Total: 18.39 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 3.49 Total: -19.43 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -3.84 Total: -83.78 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -1.61 Total: -18.41 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.25 kcal Atomic # 16 Polarization: -11.28 SS G_CDS: -0.83 Total: -12.11 kcal Total: -67.73 -0.36 -68.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.614 kcal (2) G-P(sol) polarization free energy of solvation -67.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds