Wall clock time and date at job start Mon Mar 30 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.50518 * 300.08578 * 9 7 2 11 11 C 1.53100 * 109.50823 * 60.21759 * 9 7 2 12 12 O 1.43012 * 109.26053 * 176.78687 * 11 9 7 13 13 C 1.43019 * 113.73649 * 301.32812 * 12 11 9 14 14 C 1.53102 * 109.25647 * 58.67087 * 13 12 11 15 15 N 1.47009 * 109.50931 * 180.02562 * 9 7 2 16 16 C 1.46899 * 111.00303 * 57.66967 * 15 9 7 17 17 C 1.52995 * 109.47471 * 170.00076 * 16 15 9 18 18 H 1.09003 * 109.57832 * 299.75131 * 17 16 15 19 19 C 1.53095 * 109.57790 * 179.35627 * 17 16 15 20 20 C 1.52587 * 109.95588 * 177.16905 * 19 17 16 21 21 C 1.52584 * 110.72301 * 70.67786 * 20 19 17 22 22 C 1.53096 * 109.95617 * 289.32128 * 21 20 19 23 23 S 1.81749 * 109.57277 * 60.00185 * 17 16 15 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.50635 * 296.71937 * 11 9 7 26 26 H 1.09004 * 109.50326 * 56.84740 * 11 9 7 27 27 H 1.08998 * 109.50963 * 298.74258 * 13 12 11 28 28 H 1.08999 * 109.54220 * 178.62561 * 13 12 11 29 29 H 1.09003 * 109.50317 * 183.21454 * 14 13 12 30 30 H 1.09000 * 109.53866 * 63.10882 * 14 13 12 31 31 H 1.09001 * 109.47361 * 290.00630 * 16 15 9 32 32 H 1.08998 * 109.46990 * 50.00077 * 16 15 9 33 33 H 1.09000 * 109.39161 * 297.31325 * 19 17 16 34 34 H 1.09002 * 109.38960 * 57.02177 * 19 17 16 35 35 H 1.08995 * 109.22792 * 310.35569 * 20 19 17 36 36 H 1.09003 * 109.19243 * 190.97759 * 20 19 17 37 37 H 1.09001 * 109.38499 * 169.17553 * 21 20 19 38 38 H 1.08994 * 109.31502 * 49.42515 * 21 20 19 39 39 H 1.09005 * 109.57743 * 303.22022 * 22 21 20 40 40 H 1.09005 * 109.67995 * 182.89772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6232 -2.5570 0.8887 11 6 0.3740 -2.5832 -1.2527 12 8 -0.2809 -3.8542 -1.2856 13 6 0.6191 -4.9657 -1.2877 14 6 1.4985 -4.9057 -0.0359 15 7 2.2054 -3.6172 -0.0005 16 6 3.1051 -3.5414 1.1583 17 6 3.9105 -4.8379 1.2644 18 1 3.2310 -5.6806 1.3923 19 6 4.8605 -4.7551 2.4620 20 6 5.6178 -6.0705 2.6180 21 6 6.6333 -6.2456 1.4927 22 6 5.9082 -6.5176 0.1721 23 16 4.8914 -5.0708 -0.2479 24 1 -0.4850 0.8401 0.0004 25 1 -0.3728 -1.7896 -1.2281 26 1 0.9960 -2.4711 -2.1408 27 1 1.2483 -4.9228 -2.1768 28 1 0.0503 -5.8954 -1.2888 29 1 2.2243 -5.7186 -0.0617 30 1 0.8748 -5.0028 0.8527 31 1 3.7863 -2.6995 1.0350 32 1 2.5176 -3.4034 2.0659 33 1 5.5720 -3.9445 2.3042 34 1 4.2856 -4.5590 3.3671 35 1 4.9088 -6.8980 2.5935 36 1 6.1389 -6.0727 3.5754 37 1 7.2894 -7.0846 1.7247 38 1 7.2276 -5.3368 1.3987 39 1 5.2693 -7.3941 0.2800 40 1 6.6382 -6.6928 -0.6183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:04 Heat of formation + Delta-G solvation = -49.435012 kcal Electronic energy + Delta-G solvation = -19944.038993 eV Core-core repulsion = 17077.488470 eV Total energy + Delta-G solvation = -2866.550523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.71630 -36.99369 -35.07688 -33.19148 -31.55141 -29.82269 -28.32410 -26.13729 -25.15554 -23.45973 -22.40200 -20.91905 -20.61146 -19.17548 -16.80616 -16.41763 -15.57793 -15.17180 -14.89076 -14.83342 -14.46488 -13.92444 -13.78487 -13.57977 -13.40442 -13.27716 -13.00674 -12.33514 -12.06791 -11.93306 -11.58705 -11.22993 -11.01562 -10.96182 -10.89410 -10.80577 -10.65302 -10.29242 -10.21987 -10.11496 -9.63983 -9.26461 -9.06873 -8.65451 -8.33219 -7.31865 -7.17376 -6.10154 -4.14143 2.02461 2.88295 3.29775 3.34556 3.37651 4.35170 4.55058 4.71289 4.73810 4.91862 4.98683 5.13967 5.22627 5.24741 5.29585 5.46089 5.59349 5.66997 5.78398 5.81350 5.89942 5.93166 5.93900 6.02188 6.02456 6.19118 6.29225 6.36012 6.49121 6.59608 6.74462 6.94536 7.29694 7.53084 7.71765 7.90360 8.18570 8.22954 8.55974 8.92836 9.51298 10.97872 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.006453 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.370810 B = 4337.888293 C = 5264.922568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.507 4.507 8 H 0.066 0.934 9 C 0.189 3.811 10 H 0.007 0.993 11 C 0.070 3.930 12 O -0.406 6.406 13 C 0.069 3.931 14 C 0.015 3.985 15 N -0.524 5.524 16 C 0.088 3.912 17 C -0.056 4.056 18 H 0.082 0.918 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.106 4.106 23 S -0.209 6.209 24 H 0.264 0.736 25 H 0.122 0.878 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.023 0.977 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.364 -12.154 3.436 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.083 3.917 10 H 0.024 0.976 11 C -0.006 4.006 12 O -0.325 6.325 13 C -0.008 4.008 14 C -0.114 4.114 15 N -0.249 5.249 16 C -0.041 4.041 17 C -0.185 4.185 18 H 0.100 0.900 19 C -0.157 4.157 20 C -0.164 4.164 21 C -0.158 4.158 22 C -0.255 4.255 23 S 0.018 5.982 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.256 -11.401 2.032 14.825 hybrid contribution 0.239 0.106 1.908 1.926 sum 9.495 -11.294 3.941 15.272 Atomic orbital electron populations 1.69843 1.05912 1.27073 1.50439 1.24979 0.94935 0.99364 0.94864 0.86515 0.79441 0.82516 0.78738 1.21267 1.20275 1.20056 1.21028 0.93418 0.89235 1.50889 0.91580 1.19862 0.89384 0.88120 0.94328 0.97563 1.23108 0.97416 0.82745 0.97299 1.87897 1.33947 1.15599 1.95043 1.22403 0.91842 0.89991 0.96605 1.22803 0.96519 0.94302 0.97765 1.62347 1.20785 1.02028 1.39748 1.21791 0.95208 0.94361 0.92781 1.23562 0.98044 1.02648 0.94294 0.89967 1.21770 0.98334 0.98121 0.97520 1.21509 0.98216 0.97905 0.98757 1.21696 0.97972 1.02423 0.93734 1.23525 1.01353 0.99959 1.00623 1.87551 1.47610 1.38765 1.24315 0.92568 0.86054 0.94774 0.93313 0.90564 0.90713 0.95860 0.89258 0.94332 0.90430 0.91030 0.92120 0.91433 0.91636 0.90718 0.90655 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 11.37 55.43 0.63 -24.54 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.51 -13.69 8.03 -34.44 -0.28 -13.96 16 8 H 0.07 1.78 6.56 -52.49 -0.34 1.44 16 9 C 0.19 4.83 1.93 -68.76 -0.13 4.70 16 10 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 11 C 0.07 1.79 6.02 37.21 0.22 2.01 16 12 O -0.41 -9.51 10.83 -35.23 -0.38 -9.89 16 13 C 0.07 1.33 7.01 37.21 0.26 1.59 16 14 C 0.02 0.29 4.87 -3.71 -0.02 0.27 16 15 N -0.52 -11.29 4.24 -227.73 -0.97 -12.25 16 16 C 0.09 1.68 4.18 -3.83 -0.02 1.66 16 17 C -0.06 -0.85 1.97 -26.68 -0.05 -0.90 16 18 H 0.08 1.22 6.30 -51.93 -0.33 0.89 16 19 C -0.12 -1.46 5.04 -26.89 -0.14 -1.60 16 20 C -0.13 -1.28 5.61 -27.16 -0.15 -1.43 16 21 C -0.12 -1.17 5.75 -26.89 -0.15 -1.33 16 22 C -0.11 -1.18 6.46 37.21 0.24 -0.94 16 23 S -0.21 -3.23 20.64 -107.50 -2.22 -5.45 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.12 3.35 6.19 -51.93 -0.32 3.03 16 26 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.26 5.55 -51.93 -0.29 0.97 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 1.86 6.72 -51.93 -0.35 1.51 16 32 H 0.04 0.76 8.08 -51.93 -0.42 0.35 16 33 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 39 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -28.53 313.42 -10.21 -38.74 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.67 Total: 0.98 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.31 Total: -8.39 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.33 Total: -36.79 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.38 Total: -9.89 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.22 Total: -5.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.53 -10.21 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.699 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds