Wall clock time and date at job start Mon Mar 30 2020 05:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.50518 * 300.08578 * 9 7 2 11 11 C 1.53100 * 109.50823 * 60.21759 * 9 7 2 12 12 O 1.43012 * 109.26053 * 176.78687 * 11 9 7 13 13 C 1.43019 * 113.73649 * 301.32812 * 12 11 9 14 14 C 1.53102 * 109.25647 * 58.67087 * 13 12 11 15 15 N 1.47009 * 109.50931 * 180.02562 * 9 7 2 16 16 C 1.46899 * 111.00303 * 57.66967 * 15 9 7 17 17 C 1.52995 * 109.47471 * 170.00076 * 16 15 9 18 18 H 1.09003 * 109.57832 * 299.75131 * 17 16 15 19 19 C 1.53095 * 109.57790 * 179.35627 * 17 16 15 20 20 C 1.52587 * 109.95588 * 177.16905 * 19 17 16 21 21 C 1.52584 * 110.72301 * 70.67786 * 20 19 17 22 22 C 1.53096 * 109.95617 * 289.32128 * 21 20 19 23 23 S 1.81749 * 109.57277 * 60.00185 * 17 16 15 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.50635 * 296.71937 * 11 9 7 26 26 H 1.09004 * 109.50326 * 56.84740 * 11 9 7 27 27 H 1.08998 * 109.50963 * 298.74258 * 13 12 11 28 28 H 1.08999 * 109.54220 * 178.62561 * 13 12 11 29 29 H 1.09003 * 109.50317 * 183.21454 * 14 13 12 30 30 H 1.09000 * 109.53866 * 63.10882 * 14 13 12 31 31 H 1.09001 * 109.47361 * 290.00630 * 16 15 9 32 32 H 1.08998 * 109.46990 * 50.00077 * 16 15 9 33 33 H 1.09000 * 109.39161 * 297.31325 * 19 17 16 34 34 H 1.09002 * 109.38960 * 57.02177 * 19 17 16 35 35 H 1.08995 * 109.22792 * 310.35569 * 20 19 17 36 36 H 1.09003 * 109.19243 * 190.97759 * 20 19 17 37 37 H 1.09001 * 109.38499 * 169.17553 * 21 20 19 38 38 H 1.08994 * 109.31502 * 49.42515 * 21 20 19 39 39 H 1.09005 * 109.57743 * 303.22022 * 22 21 20 40 40 H 1.09005 * 109.67995 * 182.89772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6232 -2.5570 0.8887 11 6 0.3740 -2.5832 -1.2527 12 8 -0.2809 -3.8542 -1.2856 13 6 0.6191 -4.9657 -1.2877 14 6 1.4985 -4.9057 -0.0359 15 7 2.2054 -3.6172 -0.0005 16 6 3.1051 -3.5414 1.1583 17 6 3.9105 -4.8379 1.2644 18 1 3.2310 -5.6806 1.3923 19 6 4.8605 -4.7551 2.4620 20 6 5.6178 -6.0705 2.6180 21 6 6.6333 -6.2456 1.4927 22 6 5.9082 -6.5176 0.1721 23 16 4.8914 -5.0708 -0.2479 24 1 -0.4850 0.8401 0.0004 25 1 -0.3728 -1.7896 -1.2281 26 1 0.9960 -2.4711 -2.1408 27 1 1.2483 -4.9228 -2.1768 28 1 0.0503 -5.8954 -1.2888 29 1 2.2243 -5.7186 -0.0617 30 1 0.8748 -5.0028 0.8527 31 1 3.7863 -2.6995 1.0350 32 1 2.5176 -3.4034 2.0659 33 1 5.5720 -3.9445 2.3042 34 1 4.2856 -4.5590 3.3671 35 1 4.9088 -6.8980 2.5935 36 1 6.1389 -6.0727 3.5754 37 1 7.2894 -7.0846 1.7247 38 1 7.2276 -5.3368 1.3987 39 1 5.2693 -7.3941 0.2800 40 1 6.6382 -6.6928 -0.6183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:03 Heat of formation + Delta-G solvation = -67.042891 kcal Electronic energy + Delta-G solvation = -19944.802528 eV Core-core repulsion = 17077.488470 eV Total energy + Delta-G solvation = -2867.314058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46039 -38.13092 -36.61731 -35.15569 -32.83471 -31.67883 -29.57404 -27.66421 -27.05258 -24.73713 -24.15115 -22.30628 -21.56305 -20.96731 -18.67451 -17.73794 -17.36252 -16.83800 -16.43210 -16.11516 -15.98960 -15.45626 -15.37548 -14.91432 -14.85746 -14.51442 -14.36840 -13.99498 -13.41027 -13.21827 -12.90582 -12.78984 -12.70572 -12.53063 -12.46878 -12.13690 -12.02658 -11.96585 -11.77418 -11.45371 -11.17804 -11.03097 -10.71080 -10.37432 -10.24855 -9.01457 -8.47315 -8.19566 -6.31320 0.90341 1.41002 1.43226 1.51171 1.81243 2.38356 3.04880 3.07251 3.31293 3.69239 3.82452 3.92553 4.06244 4.13578 4.21061 4.28129 4.36205 4.45055 4.49704 4.57024 4.66263 4.71785 4.74036 4.82537 4.88616 4.93629 4.99363 5.03057 5.11380 5.12970 5.17842 5.28593 5.38565 5.49681 5.64139 5.97032 6.23274 6.43715 6.64024 6.82206 7.38236 8.87879 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.006453 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.370810 B = 4337.888293 C = 5264.922568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.198 3.802 10 H -0.035 1.035 11 C 0.084 3.916 12 O -0.419 6.419 13 C 0.062 3.938 14 C 0.019 3.981 15 N -0.529 5.529 16 C 0.092 3.908 17 C -0.039 4.039 18 H 0.089 0.911 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.087 4.087 23 S -0.274 6.274 24 H 0.266 0.734 25 H 0.094 0.906 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.183 -14.004 3.932 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.090 3.910 10 H -0.017 1.017 11 C 0.008 3.992 12 O -0.339 6.339 13 C -0.015 4.015 14 C -0.110 4.110 15 N -0.254 5.254 16 C -0.037 4.037 17 C -0.168 4.168 18 H 0.107 0.893 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.235 4.235 23 S -0.048 6.048 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.086 -13.275 2.534 17.479 hybrid contribution -0.305 0.577 1.746 1.864 sum 10.781 -12.698 4.279 17.198 Atomic orbital electron populations 1.69974 1.07251 1.27872 1.50907 1.25764 0.95707 1.02624 0.94332 0.85520 0.78268 0.78449 0.78911 1.20677 1.19519 1.19673 1.21231 0.93255 0.90363 1.51104 0.92132 1.19592 0.89478 0.89434 0.92473 1.01710 1.22705 0.96330 0.83421 0.96776 1.87853 1.35158 1.15764 1.95115 1.22752 0.92107 0.89876 0.96729 1.22866 0.96936 0.93719 0.97436 1.62281 1.20071 1.02002 1.41008 1.21701 0.94581 0.96243 0.91198 1.23361 0.98091 1.00077 0.95229 0.89276 1.21769 0.97868 0.99678 0.96238 1.21491 0.98254 0.96223 0.99891 1.21692 0.97965 1.03220 0.92692 1.23593 1.00755 0.97347 1.01821 1.87732 1.49436 1.42251 1.25406 0.92487 0.88771 0.95642 0.93031 0.86562 0.87869 0.96433 0.91577 0.95729 0.91328 0.90631 0.91432 0.89498 0.88794 0.91498 0.89377 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.47 11.37 21.45 0.24 -53.23 16 2 C 0.02 0.84 5.31 84.66 0.45 1.28 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.52 -29.11 8.03 25.60 0.21 -28.90 16 8 H 0.06 3.38 6.56 -2.91 -0.02 3.36 16 9 C 0.20 10.49 1.93 44.18 0.09 10.57 16 10 H -0.03 -2.07 8.14 -2.39 -0.02 -2.09 16 11 C 0.08 4.45 6.02 72.02 0.43 4.88 16 12 O -0.42 -19.85 10.83 -148.98 -1.61 -21.47 16 13 C 0.06 2.31 7.01 72.02 0.50 2.82 16 14 C 0.02 0.70 4.87 86.32 0.42 1.12 16 15 N -0.53 -23.22 4.24 -874.41 -3.71 -26.92 16 16 C 0.09 3.59 4.18 86.30 0.36 3.95 16 17 C -0.04 -1.13 1.97 30.62 0.06 -1.07 16 18 H 0.09 2.46 6.30 -2.39 -0.02 2.45 16 19 C -0.12 -2.69 5.04 30.49 0.15 -2.54 16 20 C -0.12 -2.03 5.61 30.32 0.17 -1.86 16 21 C -0.12 -1.87 5.75 30.49 0.18 -1.69 16 22 C -0.09 -1.66 6.46 72.01 0.46 -1.20 16 23 S -0.27 -8.14 20.64 -56.49 -1.17 -9.31 16 24 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 25 H 0.09 5.46 6.19 -2.39 -0.01 5.44 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.10 3.26 5.55 -2.39 -0.01 3.25 16 30 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 2.86 6.72 -2.39 -0.02 2.85 16 32 H 0.02 1.02 8.08 -2.39 -0.02 1.00 16 33 H 0.07 1.72 8.05 -2.39 -0.02 1.70 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.21 8.05 -2.39 -0.02 1.19 16 39 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -63.81 313.42 0.27 -63.54 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.00 Total: 14.08 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 3.48 Total: -12.64 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -3.46 Total: -80.15 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.61 Total: -21.47 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.17 Total: -9.31 kcal Total: -63.81 0.27 -63.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.505 kcal (2) G-P(sol) polarization free energy of solvation -63.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds