Wall clock time and date at job start Mon Mar 30 2020 05:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48499 * 109.47121 * 269.99517 * 3 2 1 5 5 H 1.48494 * 109.47325 * 29.99958 * 3 2 1 6 6 H 1.48506 * 109.46853 * 149.99914 * 3 2 1 7 7 C 1.37873 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00132 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.51044 * 59.90920 * 9 7 2 11 11 C 1.53103 * 109.53810 * 299.79867 * 9 7 2 12 12 O 1.43011 * 109.25673 * 183.19817 * 11 9 7 13 13 C 1.43012 * 113.74024 * 58.67095 * 12 11 9 14 14 C 1.53099 * 109.26070 * 301.32804 * 13 12 11 15 15 N 1.47012 * 109.25354 * 56.84880 * 14 13 12 16 16 C 1.46906 * 110.99858 * 177.60785 * 15 14 13 17 17 C 1.52993 * 109.47378 * 293.63700 * 16 15 14 18 18 H 1.09001 * 109.57733 * 59.73447 * 17 16 15 19 19 C 1.53093 * 109.58001 * 179.97438 * 17 16 15 20 20 C 1.52583 * 109.95908 * 182.83101 * 19 17 16 21 21 C 1.52579 * 110.72346 * 289.32518 * 20 19 17 22 22 C 1.53095 * 109.96028 * 70.67272 * 21 20 19 23 23 S 1.81745 * 108.84299 * 296.97824 * 22 21 20 24 24 H 0.97003 * 120.00297 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.50622 * 303.13091 * 11 9 7 26 26 H 1.08996 * 109.50442 * 63.26406 * 11 9 7 27 27 H 1.09003 * 109.50989 * 61.26862 * 13 12 11 28 28 H 1.09003 * 109.50673 * 181.39262 * 13 12 11 29 29 H 1.08994 * 109.50449 * 296.91703 * 14 13 12 30 30 H 1.08998 * 109.51062 * 176.78522 * 14 13 12 31 31 H 1.09004 * 109.47040 * 53.63488 * 16 15 14 32 32 H 1.09000 * 109.47033 * 173.63440 * 16 15 14 33 33 H 1.08996 * 109.39016 * 302.98054 * 19 17 16 34 34 H 1.08998 * 109.39059 * 62.68075 * 19 17 16 35 35 H 1.08995 * 109.22717 * 49.64327 * 20 19 17 36 36 H 1.08996 * 109.22581 * 169.04564 * 20 19 17 37 37 H 1.09004 * 109.38916 * 190.82768 * 21 20 19 38 38 H 1.09005 * 109.39426 * 310.62275 * 21 20 19 39 39 H 1.09005 * 109.56936 * 56.78261 * 22 21 20 40 40 H 1.09001 * 109.57819 * 177.16311 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6233 -2.5571 -0.8886 11 6 0.3736 -2.5838 1.2523 12 8 -0.2811 -3.8549 1.2843 13 6 0.6189 -4.9662 1.2864 14 6 1.4989 -4.9058 0.0350 15 7 2.2057 -3.6172 0.0012 16 6 3.1064 -3.5410 -1.1569 17 6 4.2336 -4.5626 -0.9944 18 1 3.8109 -5.5648 -0.9245 19 6 5.1734 -4.4857 -2.2005 20 6 6.2615 -5.5488 -2.0816 21 6 7.2411 -5.1963 -0.9662 22 6 6.5637 -5.3633 0.3965 23 16 5.1801 -4.1905 0.5119 24 1 -0.4851 0.8400 -0.0004 25 1 0.9951 -2.4721 2.1407 26 1 -0.3732 -1.7902 1.2276 27 1 1.2476 -4.9239 2.1758 28 1 0.0495 -5.8957 1.2864 29 1 0.8750 -5.0021 -0.8536 30 1 2.2247 -5.7185 0.0607 31 1 2.5472 -3.7586 -2.0670 32 1 3.5306 -2.5391 -1.2220 33 1 4.6035 -4.6519 -3.1146 34 1 5.6344 -3.4987 -2.2377 35 1 5.8000 -6.5117 -1.8629 36 1 6.8022 -5.6161 -3.0255 37 1 8.1070 -5.8560 -1.0232 38 1 7.5658 -4.1623 -1.0829 39 1 6.1882 -6.3819 0.4952 40 1 7.2830 -5.1588 1.1895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:06 Heat of formation + Delta-G solvation = -51.424165 kcal Electronic energy + Delta-G solvation = -19947.608996 eV Core-core repulsion = 17080.972216 eV Total energy + Delta-G solvation = -2866.636779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.66512 -36.95628 -35.04523 -33.14320 -31.59935 -29.81629 -28.31599 -26.10369 -25.14706 -23.38328 -22.29748 -20.94315 -20.64051 -19.19578 -16.77392 -16.40320 -15.58640 -15.11239 -14.87622 -14.76619 -14.48101 -13.87383 -13.74433 -13.56582 -13.37714 -13.28446 -12.99759 -12.28221 -12.04860 -11.95689 -11.53638 -11.20930 -11.04646 -10.95868 -10.87200 -10.79958 -10.59001 -10.30566 -10.18772 -10.06846 -9.65480 -9.13200 -9.07125 -8.64822 -8.34561 -7.33808 -7.07356 -6.09544 -4.13113 2.12285 2.99033 3.28727 3.35990 3.41322 4.36080 4.56531 4.75242 4.77597 4.93398 5.00494 5.17901 5.25877 5.28516 5.34825 5.51519 5.63564 5.70264 5.79474 5.85925 5.88487 5.94737 5.97728 6.00489 6.05193 6.16333 6.28880 6.32973 6.48176 6.60821 6.75490 6.94298 7.30387 7.53337 7.72356 7.90129 8.18617 8.22238 8.55756 8.94466 9.52229 10.98553 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.006975 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.495328 B = 4013.594049 C = 5038.139264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.069 0.931 9 C 0.190 3.810 10 H 0.006 0.994 11 C 0.070 3.930 12 O -0.405 6.405 13 C 0.069 3.931 14 C 0.019 3.981 15 N -0.523 5.523 16 C 0.079 3.921 17 C -0.048 4.048 18 H 0.077 0.923 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.108 4.108 23 S -0.201 6.201 24 H 0.264 0.736 25 H 0.034 0.966 26 H 0.122 0.878 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.257 -10.978 -2.588 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.544 4.544 8 H 0.087 0.913 9 C 0.083 3.917 10 H 0.024 0.976 11 C -0.006 4.006 12 O -0.324 6.324 13 C -0.009 4.009 14 C -0.110 4.110 15 N -0.248 5.248 16 C -0.050 4.050 17 C -0.178 4.178 18 H 0.096 0.904 19 C -0.158 4.158 20 C -0.163 4.163 21 C -0.158 4.158 22 C -0.257 4.257 23 S 0.025 5.975 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.140 0.860 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.952 -10.061 -1.328 14.214 hybrid contribution 0.475 -0.145 -1.715 1.785 sum 10.428 -10.206 -3.042 14.905 Atomic orbital electron populations 1.69851 1.05922 1.26957 1.50573 1.24974 0.94918 0.99365 0.94888 0.86474 0.79957 0.82883 0.78085 1.20735 1.21166 1.19581 1.21081 0.93509 0.89156 1.50658 0.91291 1.19831 0.89417 0.88132 0.94296 0.97590 1.23113 0.97429 0.82693 0.97343 1.87899 1.33897 1.15599 1.95037 1.22400 0.91888 0.90064 0.96517 1.22718 0.96356 0.93942 0.97961 1.62267 1.20638 1.01950 1.39912 1.21848 0.91942 0.99329 0.91884 1.23377 0.97551 1.02541 0.94289 0.90436 1.21779 0.96370 1.00251 0.97407 1.21497 0.96957 0.98968 0.98887 1.21702 0.97942 1.02667 0.93531 1.23531 0.99950 1.01891 1.00336 1.87651 1.25675 1.50938 1.33220 0.92642 0.94728 0.86045 0.93326 0.90546 0.95592 0.91593 0.94929 0.88268 0.91209 0.90436 0.92170 0.91523 0.91738 0.90732 0.90764 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 11.37 55.43 0.63 -24.53 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.51 -13.59 7.80 -34.44 -0.27 -13.86 16 8 H 0.07 1.87 6.57 -52.49 -0.34 1.52 16 9 C 0.19 4.81 1.97 -68.75 -0.14 4.67 16 10 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 11 C 0.07 1.78 6.02 37.21 0.22 2.00 16 12 O -0.41 -9.45 10.83 -35.23 -0.38 -9.83 16 13 C 0.07 1.32 7.01 37.21 0.26 1.58 16 14 C 0.02 0.36 5.44 -3.71 -0.02 0.34 16 15 N -0.52 -11.18 4.10 -227.72 -0.93 -12.11 16 16 C 0.08 1.51 4.20 -3.82 -0.02 1.49 16 17 C -0.05 -0.74 2.42 -26.69 -0.06 -0.80 16 18 H 0.08 1.16 6.51 -51.93 -0.34 0.82 16 19 C -0.12 -1.49 5.04 -26.90 -0.14 -1.63 16 20 C -0.13 -1.30 5.61 -27.16 -0.15 -1.46 16 21 C -0.12 -1.23 5.75 -26.90 -0.15 -1.39 16 22 C -0.11 -1.29 6.45 37.21 0.24 -1.05 16 23 S -0.20 -3.29 21.31 -107.50 -2.29 -5.58 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.12 3.35 6.19 -51.93 -0.32 3.03 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.09 6.38 -51.93 -0.33 0.75 16 31 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 32 H 0.10 2.10 6.04 -51.93 -0.31 1.79 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 35 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -28.51 315.22 -10.25 -38.76 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.69 Total: 1.01 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.32 Total: -8.55 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.30 Total: -36.65 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.38 Total: -9.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.29 Total: -5.58 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.51 -10.25 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.660 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds