Wall clock time and date at job start Mon Mar 30 2020 05:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48499 * 109.47121 * 269.99517 * 3 2 1 5 5 H 1.48494 * 109.47325 * 29.99958 * 3 2 1 6 6 H 1.48506 * 109.46853 * 149.99914 * 3 2 1 7 7 C 1.37873 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00132 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.51044 * 59.90920 * 9 7 2 11 11 C 1.53103 * 109.53810 * 299.79867 * 9 7 2 12 12 O 1.43011 * 109.25673 * 183.19817 * 11 9 7 13 13 C 1.43012 * 113.74024 * 58.67095 * 12 11 9 14 14 C 1.53099 * 109.26070 * 301.32804 * 13 12 11 15 15 N 1.47012 * 109.25354 * 56.84880 * 14 13 12 16 16 C 1.46906 * 110.99858 * 177.60785 * 15 14 13 17 17 C 1.52993 * 109.47378 * 293.63700 * 16 15 14 18 18 H 1.09001 * 109.57733 * 59.73447 * 17 16 15 19 19 C 1.53093 * 109.58001 * 179.97438 * 17 16 15 20 20 C 1.52583 * 109.95908 * 182.83101 * 19 17 16 21 21 C 1.52579 * 110.72346 * 289.32518 * 20 19 17 22 22 C 1.53095 * 109.96028 * 70.67272 * 21 20 19 23 23 S 1.81745 * 108.84299 * 296.97824 * 22 21 20 24 24 H 0.97003 * 120.00297 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.50622 * 303.13091 * 11 9 7 26 26 H 1.08996 * 109.50442 * 63.26406 * 11 9 7 27 27 H 1.09003 * 109.50989 * 61.26862 * 13 12 11 28 28 H 1.09003 * 109.50673 * 181.39262 * 13 12 11 29 29 H 1.08994 * 109.50449 * 296.91703 * 14 13 12 30 30 H 1.08998 * 109.51062 * 176.78522 * 14 13 12 31 31 H 1.09004 * 109.47040 * 53.63488 * 16 15 14 32 32 H 1.09000 * 109.47033 * 173.63440 * 16 15 14 33 33 H 1.08996 * 109.39016 * 302.98054 * 19 17 16 34 34 H 1.08998 * 109.39059 * 62.68075 * 19 17 16 35 35 H 1.08995 * 109.22717 * 49.64327 * 20 19 17 36 36 H 1.08996 * 109.22581 * 169.04564 * 20 19 17 37 37 H 1.09004 * 109.38916 * 190.82768 * 21 20 19 38 38 H 1.09005 * 109.39426 * 310.62275 * 21 20 19 39 39 H 1.09005 * 109.56936 * 56.78261 * 22 21 20 40 40 H 1.09001 * 109.57819 * 177.16311 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6233 -2.5571 -0.8886 11 6 0.3736 -2.5838 1.2523 12 8 -0.2811 -3.8549 1.2843 13 6 0.6189 -4.9662 1.2864 14 6 1.4989 -4.9058 0.0350 15 7 2.2057 -3.6172 0.0012 16 6 3.1064 -3.5410 -1.1569 17 6 4.2336 -4.5626 -0.9944 18 1 3.8109 -5.5648 -0.9245 19 6 5.1734 -4.4857 -2.2005 20 6 6.2615 -5.5488 -2.0816 21 6 7.2411 -5.1963 -0.9662 22 6 6.5637 -5.3633 0.3965 23 16 5.1801 -4.1905 0.5119 24 1 -0.4851 0.8400 -0.0004 25 1 0.9951 -2.4721 2.1407 26 1 -0.3732 -1.7902 1.2276 27 1 1.2476 -4.9239 2.1758 28 1 0.0495 -5.8957 1.2864 29 1 0.8750 -5.0021 -0.8536 30 1 2.2247 -5.7185 0.0607 31 1 2.5472 -3.7586 -2.0670 32 1 3.5306 -2.5391 -1.2220 33 1 4.6035 -4.6519 -3.1146 34 1 5.6344 -3.4987 -2.2377 35 1 5.8000 -6.5117 -1.8629 36 1 6.8022 -5.6161 -3.0255 37 1 8.1070 -5.8560 -1.0232 38 1 7.5658 -4.1623 -1.0829 39 1 6.1882 -6.3819 0.4952 40 1 7.2830 -5.1588 1.1895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:06 Heat of formation + Delta-G solvation = -68.886889 kcal Electronic energy + Delta-G solvation = -19948.366236 eV Core-core repulsion = 17080.972216 eV Total energy + Delta-G solvation = -2867.394020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40813 -38.08655 -36.60332 -35.10839 -32.87902 -31.66981 -29.57410 -27.65804 -27.00296 -24.68831 -24.06315 -22.31806 -21.57801 -20.99143 -18.65807 -17.75196 -17.35972 -16.81660 -16.36555 -16.09756 -15.96185 -15.44193 -15.35531 -14.91121 -14.87715 -14.46878 -14.35440 -13.97363 -13.38579 -13.24841 -12.95094 -12.78714 -12.64802 -12.50479 -12.44229 -12.13419 -12.04419 -11.91995 -11.76814 -11.40712 -11.19934 -11.01275 -10.69788 -10.32048 -10.22690 -9.04167 -8.40488 -8.18788 -6.29543 0.96801 1.40130 1.42320 1.53603 1.87771 2.39036 3.05369 3.07202 3.31061 3.75303 3.85572 3.94837 4.09768 4.16195 4.20058 4.31345 4.37208 4.45200 4.51461 4.55769 4.65083 4.72806 4.74931 4.83693 4.89928 4.94591 5.00904 5.03611 5.12871 5.14029 5.18807 5.31409 5.40223 5.50684 5.65456 5.98282 6.24233 6.44615 6.64979 6.84410 7.39602 8.88912 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.006975 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.495328 B = 4013.594049 C = 5038.139264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.198 3.802 10 H -0.035 1.035 11 C 0.085 3.915 12 O -0.419 6.419 13 C 0.062 3.938 14 C 0.021 3.979 15 N -0.527 5.527 16 C 0.082 3.918 17 C -0.027 4.027 18 H 0.088 0.912 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.087 4.087 23 S -0.281 6.281 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.117 0.883 29 H 0.020 0.980 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.270 -12.821 -3.029 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.091 3.909 10 H -0.017 1.017 11 C 0.008 3.992 12 O -0.339 6.339 13 C -0.015 4.015 14 C -0.108 4.108 15 N -0.252 5.252 16 C -0.047 4.047 17 C -0.156 4.156 18 H 0.106 0.894 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.235 4.235 23 S -0.055 6.055 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.039 0.961 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.977 -11.927 -1.776 16.996 hybrid contribution -0.128 0.327 -1.572 1.611 sum 11.849 -11.600 -3.348 16.916 Atomic orbital electron populations 1.69978 1.07215 1.27742 1.51160 1.25740 0.95674 1.02552 0.94470 0.85497 0.78639 0.78921 0.78300 1.19974 1.20650 1.19407 1.21258 0.93251 0.90283 1.50654 0.92005 1.19548 0.89507 0.89457 0.92403 1.01743 1.22697 0.96309 0.83385 0.96805 1.87854 1.35153 1.15773 1.95115 1.22748 0.92146 0.89896 0.96667 1.22801 0.96904 0.93422 0.97631 1.62238 1.19888 1.01899 1.41136 1.21792 0.92629 0.99292 0.90975 1.23195 0.96502 1.01146 0.94788 0.89412 1.21777 0.96715 1.00791 0.96316 1.21478 0.96200 0.98101 0.99980 1.21700 0.98670 1.02857 0.92387 1.23571 0.97607 1.00525 1.01825 1.87881 1.29182 1.53873 1.34587 0.92545 0.95690 0.88837 0.93038 0.86532 0.96141 0.88410 0.95203 0.91133 0.90273 0.91637 0.91326 0.89470 0.88860 0.91702 0.89463 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.55 11.37 21.45 0.24 -53.31 16 2 C 0.01 0.82 5.31 84.65 0.45 1.27 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.52 -28.76 7.80 25.60 0.20 -28.56 16 8 H 0.06 3.47 6.57 -2.91 -0.02 3.45 16 9 C 0.20 10.46 1.97 44.18 0.09 10.54 16 10 H -0.03 -2.08 8.14 -2.39 -0.02 -2.10 16 11 C 0.08 4.45 6.02 72.02 0.43 4.89 16 12 O -0.42 -19.74 10.83 -148.98 -1.61 -21.35 16 13 C 0.06 2.28 7.01 72.02 0.50 2.79 16 14 C 0.02 0.76 5.44 86.31 0.47 1.23 16 15 N -0.53 -22.84 4.10 -874.39 -3.58 -26.42 16 16 C 0.08 3.17 4.20 86.30 0.36 3.53 16 17 C -0.03 -0.80 2.42 30.62 0.07 -0.73 16 18 H 0.09 2.39 6.51 -2.39 -0.02 2.38 16 19 C -0.12 -2.71 5.04 30.49 0.15 -2.56 16 20 C -0.12 -2.06 5.61 30.32 0.17 -1.89 16 21 C -0.12 -2.01 5.75 30.49 0.18 -1.84 16 22 C -0.09 -1.81 6.45 72.01 0.46 -1.34 16 23 S -0.28 -8.96 21.31 -56.49 -1.20 -10.16 16 24 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.02 1.32 8.14 -2.39 -0.02 1.31 16 26 H 0.09 5.42 6.19 -2.39 -0.01 5.40 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 2.96 6.38 -2.39 -0.02 2.95 16 31 H 0.03 1.15 8.12 -2.38 -0.02 1.13 16 32 H 0.07 3.12 6.04 -2.39 -0.01 3.10 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.69 8.06 -2.39 -0.02 1.67 16 35 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.06 1.27 8.06 -2.38 -0.02 1.25 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -64.07 315.22 0.41 -63.66 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.00 Total: 14.08 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 3.54 Total: -12.67 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -3.34 Total: -79.73 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -1.61 Total: -21.35 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.20 Total: -10.16 kcal Total: -64.07 0.41 -63.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.227 kcal (2) G-P(sol) polarization free energy of solvation -64.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds