Wall clock time and date at job start Mon Mar 30 2020 05:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99712 * 2 1 4 4 H 1.48501 * 109.46858 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46809 * 60.00219 * 3 2 1 6 6 H 1.48499 * 109.47315 * 300.00080 * 3 2 1 7 7 C 1.37873 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00076 * 175.23905 * 7 2 1 9 9 C 1.50704 * 120.00027 * 355.24553 * 7 2 1 10 10 H 1.08998 * 109.38771 * 35.61629 * 9 7 2 11 11 C 1.53095 * 109.38899 * 275.91511 * 9 7 2 12 12 S 1.81750 * 108.84072 * 302.87842 * 11 9 7 13 13 O 1.42100 * 109.47001 * 190.73891 * 12 11 9 14 14 C 1.81755 * 102.21919 * 306.73272 * 12 11 9 15 15 C 1.53097 * 108.83816 * 53.26509 * 14 12 11 16 16 C 1.52578 * 109.95817 * 296.97476 * 15 14 12 17 17 H 1.08992 * 109.19330 * 310.37751 * 16 15 14 18 18 N 1.46898 * 109.22331 * 190.99723 * 16 15 14 19 19 C 1.46851 * 111.00076 * 179.04698 * 18 16 15 20 20 C 1.53027 * 109.52663 * 174.16120 * 19 18 16 21 21 C 1.53123 * 109.28032 * 59.17855 * 20 19 18 22 22 C 1.53115 * 109.16047 * 302.34685 * 21 20 19 23 23 C 1.46848 * 111.00293 * 54.83743 * 18 16 15 24 24 H 0.97003 * 119.99417 * 185.27944 * 1 2 3 25 25 H 1.09002 * 109.57797 * 62.68057 * 11 9 7 26 26 H 1.08994 * 109.57422 * 183.06771 * 11 9 7 27 27 H 1.09004 * 109.57527 * 293.46061 * 14 12 11 28 28 H 1.08996 * 109.57470 * 173.07507 * 14 12 11 29 29 H 1.09009 * 109.38720 * 176.82537 * 15 14 12 30 30 H 1.09003 * 109.30820 * 57.07781 * 15 14 12 31 31 H 1.09008 * 109.46096 * 294.18078 * 19 18 16 32 32 H 1.08998 * 109.46236 * 54.14289 * 19 18 16 33 33 H 1.09006 * 109.50370 * 299.23704 * 20 19 18 34 34 H 1.08999 * 109.54037 * 179.14091 * 20 19 18 35 35 H 1.09000 * 109.52352 * 182.44413 * 21 20 19 36 36 H 1.08997 * 109.52272 * 62.25390 * 21 20 19 37 37 H 1.09001 * 109.50534 * 297.71648 * 22 21 20 38 38 H 1.09001 * 109.53643 * 177.61510 * 22 21 20 39 39 H 1.08996 * 109.45990 * 305.85511 * 23 18 16 40 40 H 1.09000 * 109.45861 * 65.82357 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 1.2125 6 1 1.8903 2.3965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0771 9 6 1.2550 -2.4969 0.1093 10 1 0.3094 -2.4161 -0.4268 11 6 0.9766 -2.8015 1.5836 12 16 2.5555 -2.8414 2.4829 13 8 2.3443 -3.3631 3.7877 14 6 3.5251 -4.0280 1.5056 15 6 3.5165 -3.5853 0.0401 16 6 2.0916 -3.6154 -0.5047 17 1 1.6368 -4.5765 -0.2654 18 7 2.1279 -3.4473 -1.9636 19 6 0.7749 -3.4931 -2.5324 20 6 0.8373 -3.1707 -4.0271 21 6 1.7401 -4.1903 -4.7270 22 6 3.1292 -4.1566 -4.0838 23 6 3.0004 -4.4504 -2.5874 24 1 -0.4849 -0.8366 0.0773 25 1 0.3372 -2.0246 2.0027 26 1 0.4828 -3.7694 1.6695 27 1 3.0809 -5.0199 1.5901 28 1 4.5507 -4.0525 1.8738 29 1 4.1421 -4.2593 -0.5452 30 1 3.9104 -2.5715 -0.0324 31 1 0.3558 -4.4897 -2.3930 32 1 0.1442 -2.7604 -2.0289 33 1 1.2434 -2.1688 -4.1666 34 1 -0.1650 -3.2196 -4.4527 35 1 1.8222 -3.9389 -5.7844 36 1 1.3136 -5.1878 -4.6209 37 1 3.5714 -3.1702 -4.2241 38 1 3.7648 -4.9099 -4.5492 39 1 3.9861 -4.4130 -2.1237 40 1 2.5708 -5.4424 -2.4477 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260092546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:44 Heat of formation + Delta-G solvation = -39.640941 kcal Electronic energy + Delta-G solvation = -20498.972993 eV Core-core repulsion = 17632.847173 eV Total energy + Delta-G solvation = -2866.125820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.14856 -36.20061 -34.82690 -33.08245 -31.56286 -30.67085 -29.75016 -25.97629 -24.63407 -23.48777 -22.70724 -21.29032 -19.63823 -19.31353 -17.07263 -16.31185 -15.97886 -14.97934 -14.49543 -14.37774 -14.15446 -13.77746 -13.73631 -13.47913 -13.23027 -13.07034 -12.65526 -12.62146 -12.32640 -11.60635 -11.46150 -11.20776 -11.06180 -10.85518 -10.75925 -10.62799 -10.43733 -10.30373 -10.09654 -10.08295 -9.89998 -9.68908 -8.78245 -8.57514 -8.28525 -7.58550 -7.29684 -6.33986 -4.07175 2.36623 3.39786 3.48843 3.50187 3.63022 4.31473 4.53609 4.62599 5.08966 5.12943 5.17270 5.33658 5.38415 5.55201 5.62483 5.64172 5.75761 5.82565 5.85946 5.91327 5.98288 6.02628 6.13289 6.15015 6.17955 6.21480 6.35277 6.40598 6.43297 6.56428 6.64919 6.68573 6.86863 7.03841 7.22312 7.74654 7.82290 8.17037 8.47020 8.86046 9.64495 11.02686 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.009187 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.983128 B = 3047.109433 C = 4201.356087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 1.063 2.937 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.576 4.576 8 H 0.071 0.929 9 C 0.053 3.947 10 H 0.049 0.951 11 C -0.405 4.405 12 S 1.244 4.756 13 O -0.898 6.898 14 C -0.434 4.434 15 C -0.094 4.094 16 C 0.095 3.905 17 H 0.005 0.995 18 N -0.505 5.505 19 C 0.057 3.943 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.114 4.114 23 C 0.047 3.953 24 H 0.269 0.731 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.014 0.986 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 -5.244 -6.619 10.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.892 3.108 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.614 4.614 8 H 0.089 0.911 9 C 0.033 3.967 10 H 0.066 0.934 11 C -0.546 4.546 12 S 1.445 4.555 13 O -0.894 6.894 14 C -0.572 4.572 15 C -0.131 4.131 16 C -0.013 4.013 17 H 0.023 0.977 18 N -0.229 5.229 19 C -0.071 4.071 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.081 4.081 24 H 0.080 0.920 25 H 0.125 0.875 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.124 0.876 31 H 0.032 0.968 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 6.409 -2.676 -5.925 9.129 hybrid contribution -1.386 -4.705 0.105 4.906 sum 5.024 -7.381 -5.820 10.657 Atomic orbital electron populations 1.70760 1.07069 1.30934 1.45994 1.25718 0.96342 1.02440 0.93344 0.83628 0.75039 0.75280 0.76894 1.20825 1.21512 1.21642 1.21931 0.95068 0.90032 1.54411 0.91149 1.18595 0.96919 0.94272 0.86937 0.93355 1.27624 1.13567 1.03422 1.09945 1.71241 0.94856 1.08768 0.80674 1.92872 1.85452 1.80938 1.30100 1.27523 1.10531 1.11557 1.07572 1.21386 0.96854 1.03926 0.90980 1.21581 0.96150 0.96503 0.87070 0.97692 1.61693 1.09953 1.47574 1.03679 1.22101 0.90841 0.99120 0.95014 1.21549 0.98788 1.00044 0.94793 1.21570 0.96119 0.99002 0.98977 1.21556 0.96704 1.02075 0.94840 1.22215 0.98372 0.92664 0.94845 0.91972 0.87504 0.93285 0.91407 0.87900 0.92576 0.87597 0.96788 0.89248 0.90679 0.92382 0.92436 0.93049 0.90885 0.92496 0.90360 0.96473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.49 13.62 55.43 0.76 -23.73 16 2 C 0.03 0.65 5.45 -17.82 -0.10 0.55 16 3 Si 1.06 22.40 29.91 -169.99 -5.08 17.32 16 4 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 5 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.58 -13.01 6.82 -34.44 -0.23 -13.25 16 8 H 0.07 1.52 5.45 -52.49 -0.29 1.24 16 9 C 0.05 1.12 1.64 -91.94 -0.15 0.97 16 10 H 0.05 1.14 4.27 -51.93 -0.22 0.92 16 11 C -0.40 -8.53 5.97 37.21 0.22 -8.31 16 12 S 1.24 24.00 12.86 -107.50 -1.38 22.62 16 13 O -0.90 -21.67 18.14 -35.23 -0.64 -22.31 16 14 C -0.43 -7.28 6.44 37.21 0.24 -7.04 16 15 C -0.09 -1.57 4.83 -26.90 -0.13 -1.70 16 16 C 0.10 1.79 1.40 -68.15 -0.10 1.69 16 17 H 0.01 0.10 8.08 -51.93 -0.42 -0.32 16 18 N -0.51 -9.01 4.36 -227.22 -0.99 -10.00 16 19 C 0.06 1.00 5.23 -3.84 -0.02 0.98 16 20 C -0.11 -1.71 6.09 -26.65 -0.16 -1.87 16 21 C -0.12 -1.53 6.00 -26.61 -0.16 -1.69 16 22 C -0.11 -1.49 6.09 -26.65 -0.16 -1.65 16 23 C 0.05 0.71 5.13 -3.83 -0.02 0.69 16 24 H 0.27 7.22 6.67 -40.82 -0.27 6.95 16 25 H 0.11 2.41 8.14 -51.93 -0.42 1.99 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.06 0.85 5.57 -51.92 -0.29 0.56 16 30 H 0.11 1.81 5.52 -51.93 -0.29 1.53 16 31 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 32 H 0.09 1.80 5.77 -51.93 -0.30 1.50 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.12 5.64 -51.93 -0.29 0.82 16 40 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -29.33 305.99 -9.74 -39.07 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.24 Total: 3.04 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: -0.77 Total: -30.61 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: -0.24 Total: -33.73 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.64 Total: -22.31 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.08 Total: 17.32 kcal Atomic # 16 Polarization: 24.00 SS G_CDS: -1.38 Total: 22.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.33 -9.74 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260092546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.573 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds