Wall clock time and date at job start Mon Mar 30 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99712 * 2 1 4 4 H 1.48501 * 109.46858 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46809 * 60.00219 * 3 2 1 6 6 H 1.48499 * 109.47315 * 300.00080 * 3 2 1 7 7 C 1.37873 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00076 * 175.23905 * 7 2 1 9 9 C 1.50704 * 120.00027 * 355.24553 * 7 2 1 10 10 H 1.08998 * 109.38771 * 35.61629 * 9 7 2 11 11 C 1.53095 * 109.38899 * 275.91511 * 9 7 2 12 12 S 1.81750 * 108.84072 * 302.87842 * 11 9 7 13 13 O 1.42100 * 109.47001 * 190.73891 * 12 11 9 14 14 C 1.81755 * 102.21919 * 306.73272 * 12 11 9 15 15 C 1.53097 * 108.83816 * 53.26509 * 14 12 11 16 16 C 1.52578 * 109.95817 * 296.97476 * 15 14 12 17 17 H 1.08992 * 109.19330 * 310.37751 * 16 15 14 18 18 N 1.46898 * 109.22331 * 190.99723 * 16 15 14 19 19 C 1.46851 * 111.00076 * 179.04698 * 18 16 15 20 20 C 1.53027 * 109.52663 * 174.16120 * 19 18 16 21 21 C 1.53123 * 109.28032 * 59.17855 * 20 19 18 22 22 C 1.53115 * 109.16047 * 302.34685 * 21 20 19 23 23 C 1.46848 * 111.00293 * 54.83743 * 18 16 15 24 24 H 0.97003 * 119.99417 * 185.27944 * 1 2 3 25 25 H 1.09002 * 109.57797 * 62.68057 * 11 9 7 26 26 H 1.08994 * 109.57422 * 183.06771 * 11 9 7 27 27 H 1.09004 * 109.57527 * 293.46061 * 14 12 11 28 28 H 1.08996 * 109.57470 * 173.07507 * 14 12 11 29 29 H 1.09009 * 109.38720 * 176.82537 * 15 14 12 30 30 H 1.09003 * 109.30820 * 57.07781 * 15 14 12 31 31 H 1.09008 * 109.46096 * 294.18078 * 19 18 16 32 32 H 1.08998 * 109.46236 * 54.14289 * 19 18 16 33 33 H 1.09006 * 109.50370 * 299.23704 * 20 19 18 34 34 H 1.08999 * 109.54037 * 179.14091 * 20 19 18 35 35 H 1.09000 * 109.52352 * 182.44413 * 21 20 19 36 36 H 1.08997 * 109.52272 * 62.25390 * 21 20 19 37 37 H 1.09001 * 109.50534 * 297.71648 * 22 21 20 38 38 H 1.09001 * 109.53643 * 177.61510 * 22 21 20 39 39 H 1.08996 * 109.45990 * 305.85511 * 23 18 16 40 40 H 1.09000 * 109.45861 * 65.82357 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 1.2125 6 1 1.8903 2.3965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0771 9 6 1.2550 -2.4969 0.1093 10 1 0.3094 -2.4161 -0.4268 11 6 0.9766 -2.8015 1.5836 12 16 2.5555 -2.8414 2.4829 13 8 2.3443 -3.3631 3.7877 14 6 3.5251 -4.0280 1.5056 15 6 3.5165 -3.5853 0.0401 16 6 2.0916 -3.6154 -0.5047 17 1 1.6368 -4.5765 -0.2654 18 7 2.1279 -3.4473 -1.9636 19 6 0.7749 -3.4931 -2.5324 20 6 0.8373 -3.1707 -4.0271 21 6 1.7401 -4.1903 -4.7270 22 6 3.1292 -4.1566 -4.0838 23 6 3.0004 -4.4504 -2.5874 24 1 -0.4849 -0.8366 0.0773 25 1 0.3372 -2.0246 2.0027 26 1 0.4828 -3.7694 1.6695 27 1 3.0809 -5.0199 1.5901 28 1 4.5507 -4.0525 1.8738 29 1 4.1421 -4.2593 -0.5452 30 1 3.9104 -2.5715 -0.0324 31 1 0.3558 -4.4897 -2.3930 32 1 0.1442 -2.7604 -2.0289 33 1 1.2434 -2.1688 -4.1666 34 1 -0.1650 -3.2196 -4.4527 35 1 1.8222 -3.9389 -5.7844 36 1 1.3136 -5.1878 -4.6209 37 1 3.5714 -3.1702 -4.2241 38 1 3.7648 -4.9099 -4.5492 39 1 3.9861 -4.4130 -2.1237 40 1 2.5708 -5.4424 -2.4477 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260092546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:43 Heat of formation + Delta-G solvation = -59.158278 kcal Electronic energy + Delta-G solvation = -20499.819329 eV Core-core repulsion = 17632.847173 eV Total energy + Delta-G solvation = -2866.972156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53348 -37.64985 -36.59517 -34.75888 -32.85829 -32.12683 -31.24275 -27.50666 -26.38027 -24.80982 -24.08108 -22.71480 -21.18037 -20.57156 -18.74941 -17.79921 -17.62961 -16.50063 -15.91948 -15.84546 -15.68673 -15.37503 -15.10404 -14.85588 -14.68577 -14.43463 -14.15148 -14.02924 -13.73618 -13.17883 -12.95240 -12.81368 -12.59197 -12.43895 -12.14029 -12.05647 -11.84838 -11.67850 -11.59753 -11.53391 -11.23090 -11.04384 -10.42512 -10.36722 -10.09638 -9.00843 -8.94221 -8.28928 -6.00886 0.77535 1.77561 1.79749 1.83695 1.97858 2.80615 2.87354 3.08458 3.50374 3.87632 3.96229 3.98530 4.07734 4.12579 4.25084 4.33815 4.39025 4.42847 4.51554 4.57139 4.60863 4.68438 4.81397 4.85303 4.90570 4.93948 5.07986 5.13236 5.19209 5.27698 5.32424 5.40254 5.46470 5.49233 5.56040 6.22721 6.40812 6.48049 6.58576 6.92595 7.79002 9.08177 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.009187 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.983128 B = 3047.109433 C = 4201.356087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.024 4.024 3 Si 1.096 2.904 4 H -0.246 1.246 5 H -0.292 1.292 6 H -0.300 1.300 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.052 3.948 10 H 0.018 0.982 11 C -0.407 4.407 12 S 1.272 4.728 13 O -0.945 6.945 14 C -0.421 4.421 15 C -0.089 4.089 16 C 0.096 3.904 17 H -0.005 1.005 18 N -0.517 5.517 19 C 0.059 3.941 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.110 4.110 23 C 0.044 3.956 24 H 0.254 0.746 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.140 0.860 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.014 0.986 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.321 -6.285 -7.996 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.221 4.221 3 Si 0.921 3.079 4 H -0.169 1.169 5 H -0.219 1.219 6 H -0.227 1.227 7 C -0.596 4.596 8 H 0.106 0.894 9 C 0.032 3.968 10 H 0.036 0.964 11 C -0.548 4.548 12 S 1.475 4.525 13 O -0.941 6.941 14 C -0.560 4.560 15 C -0.127 4.127 16 C -0.013 4.013 17 H 0.013 0.987 18 N -0.241 5.241 19 C -0.069 4.069 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.084 4.084 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.158 0.842 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.610 -3.724 -7.296 12.627 hybrid contribution -2.383 -4.486 0.483 5.102 sum 7.227 -8.209 -6.812 12.885 Atomic orbital electron populations 1.70873 1.08498 1.30084 1.49507 1.26840 0.96205 1.05792 0.93302 0.83234 0.76266 0.72312 0.76104 1.16879 1.21896 1.22712 1.22216 0.95807 0.89988 1.51548 0.89365 1.18549 0.96160 0.95334 0.86757 0.96435 1.27613 1.14856 1.02154 1.10135 1.70643 0.92905 1.09674 0.79280 1.92797 1.85639 1.82643 1.33012 1.27405 1.11600 1.10148 1.06877 1.21394 0.95486 1.04875 0.90974 1.21505 0.97074 0.94580 0.88129 0.98735 1.61710 1.10196 1.49146 1.03028 1.22013 0.90592 0.97848 0.96480 1.21517 1.00082 1.00049 0.93172 1.21552 0.95486 0.98323 0.99808 1.21564 0.97093 1.02696 0.93447 1.22365 0.98046 0.91776 0.96175 0.93587 0.89987 0.93950 0.91516 0.84168 0.89549 0.87358 0.96832 0.93105 0.92246 0.91497 0.90344 0.92436 0.91469 0.89621 0.88994 0.96380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.45 13.62 21.45 0.29 -53.16 16 2 C -0.02 -1.17 5.45 84.65 0.46 -0.71 16 3 Si 1.10 44.59 29.91 68.60 2.05 46.64 16 4 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 5 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.30 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.56 -25.05 6.82 25.60 0.17 -24.88 16 8 H 0.09 3.61 5.45 -2.91 -0.02 3.59 16 9 C 0.05 2.27 1.64 -11.65 -0.02 2.25 16 10 H 0.02 0.89 4.27 -2.39 -0.01 0.88 16 11 C -0.41 -17.80 5.97 72.01 0.43 -17.38 16 12 S 1.27 47.98 12.86 -56.49 -0.73 47.25 16 13 O -0.95 -45.31 18.14 -148.98 -2.70 -48.01 16 14 C -0.42 -12.66 6.44 72.01 0.46 -12.19 16 15 C -0.09 -2.68 4.83 30.49 0.15 -2.54 16 16 C 0.10 3.51 1.40 44.64 0.06 3.57 16 17 H -0.01 -0.20 8.08 -2.39 -0.02 -0.22 16 18 N -0.52 -17.79 4.36 -872.78 -3.81 -21.60 16 19 C 0.06 2.09 5.23 86.32 0.45 2.54 16 20 C -0.11 -3.23 6.09 30.64 0.19 -3.04 16 21 C -0.11 -2.60 6.00 30.67 0.18 -2.42 16 22 C -0.11 -2.47 6.09 30.65 0.19 -2.29 16 23 C 0.04 1.17 5.13 86.33 0.44 1.62 16 24 H 0.25 14.61 6.67 -92.71 -0.62 14.00 16 25 H 0.08 3.95 8.14 -2.39 -0.02 3.93 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 29 H 0.09 2.17 5.57 -2.38 -0.01 2.15 16 30 H 0.11 3.26 5.52 -2.39 -0.01 3.25 16 31 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.05 2.19 5.77 -2.39 -0.01 2.18 16 33 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 2.20 5.64 -2.39 -0.01 2.19 16 40 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -65.25 305.99 -0.55 -65.80 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.17 Total: 18.55 kcal Atomic # 6 Polarization: -58.64 SS G_CDS: 3.17 Total: -55.46 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -3.52 Total: -74.76 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -2.70 Total: -48.01 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.05 Total: 46.64 kcal Atomic # 16 Polarization: 47.98 SS G_CDS: -0.73 Total: 47.25 kcal Total: -65.25 -0.55 -65.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260092546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.643 kcal (2) G-P(sol) polarization free energy of solvation -65.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds