Wall clock time and date at job start Mon Mar 30 2020 05:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00119 * 2 1 4 4 H 1.48509 * 109.47329 * 270.00201 * 3 2 1 5 5 H 1.48500 * 109.47119 * 30.00151 * 3 2 1 6 6 H 1.48502 * 109.47512 * 150.00394 * 3 2 1 7 7 C 1.37875 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00253 * 0.26896 * 7 2 1 10 10 H 1.08995 * 109.40076 * 54.36615 * 9 7 2 11 11 C 1.53244 * 109.40838 * 294.60374 * 9 7 2 12 12 S 1.81898 * 108.50731 * 177.87633 * 11 9 7 13 13 C 1.81892 * 101.91334 * 51.30376 * 12 11 9 14 14 C 1.53252 * 108.50837 * 308.69534 * 13 12 11 15 15 N 1.46468 * 109.40476 * 174.20421 * 9 7 2 16 16 C 1.46895 * 111.00448 * 317.88855 * 15 9 7 17 17 C 1.53006 * 109.46940 * 294.17151 * 16 15 9 18 18 H 1.08994 * 109.48281 * 306.35008 * 17 16 15 19 19 C 1.53094 * 109.47691 * 186.31256 * 17 16 15 20 20 C 1.53186 * 109.15910 * 182.40718 * 19 17 16 21 21 C 1.53183 * 109.03402 * 56.98433 * 20 19 17 22 22 C 1.53094 * 109.16324 * 303.01840 * 21 20 19 23 23 O 1.42904 * 109.47687 * 66.37496 * 17 16 15 24 24 H 0.97000 * 120.00266 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.63117 * 297.58200 * 11 9 7 26 26 H 1.09006 * 109.63144 * 58.16952 * 11 9 7 27 27 H 1.08998 * 109.63072 * 188.98794 * 13 12 11 28 28 H 1.08996 * 109.63045 * 68.40152 * 13 12 11 29 29 H 1.08997 * 109.40441 * 301.88301 * 14 13 12 30 30 H 1.09000 * 109.34046 * 182.07697 * 14 13 12 31 31 H 1.08996 * 109.46852 * 54.17193 * 16 15 9 32 32 H 1.09004 * 109.47235 * 174.17611 * 16 15 9 33 33 H 1.09001 * 109.52674 * 302.31211 * 19 17 16 34 34 H 1.08996 * 109.52127 * 62.50939 * 19 17 16 35 35 H 1.08996 * 109.54204 * 297.11736 * 20 19 17 36 36 H 1.08999 * 109.61106 * 176.89025 * 20 19 17 37 37 H 1.08998 * 109.52161 * 183.11164 * 21 20 19 38 38 H 1.09004 * 109.52083 * 62.92257 * 21 20 19 39 39 H 1.09001 * 109.47689 * 297.62655 * 22 21 20 40 40 H 1.08996 * 109.48270 * 177.59142 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0072 10 1 0.5546 -2.5109 -0.8457 11 6 0.4699 -2.6430 1.3033 12 16 -0.4789 -4.1938 1.2429 13 6 0.8017 -5.3995 0.7794 14 6 1.5371 -4.8762 -0.4591 15 7 2.1985 -3.6074 -0.1460 16 6 3.2335 -3.2939 -1.1401 17 6 2.5929 -3.1810 -2.5250 18 1 2.0212 -4.0846 -2.7358 19 6 3.6878 -3.0110 -3.5815 20 6 3.0364 -2.8384 -4.9572 21 6 2.0819 -1.6413 -4.9114 22 6 1.0492 -1.8641 -3.8034 23 8 1.7225 -2.0480 -2.5564 24 1 -0.4850 0.8400 0.0004 25 1 1.1648 -2.6713 2.1426 26 1 -0.2124 -1.8005 1.4174 27 1 0.3363 -6.3584 0.5511 28 1 1.5075 -5.5183 1.6014 29 1 0.8217 -4.7221 -1.2669 30 1 2.2838 -5.6065 -0.7710 31 1 3.7104 -2.3483 -0.8821 32 1 3.9809 -4.0873 -1.1491 33 1 4.2854 -2.1298 -3.3483 34 1 4.3267 -3.8940 -3.5893 35 1 2.4791 -3.7397 -5.2123 36 1 3.8073 -2.6617 -5.7073 37 1 1.5725 -1.5447 -5.8702 38 1 2.6472 -0.7324 -4.7050 39 1 0.4573 -2.7506 -4.0312 40 1 0.3934 -0.9959 -3.7378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260113682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:49 Heat of formation + Delta-G solvation = -39.225615 kcal Electronic energy + Delta-G solvation = -20860.933725 eV Core-core repulsion = 17994.825915 eV Total energy + Delta-G solvation = -2866.107811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.21550 -36.95960 -33.12140 -32.92169 -31.76695 -30.07151 -28.71202 -25.40210 -25.14245 -23.41046 -22.32572 -21.59918 -19.90521 -19.19066 -16.56917 -15.82244 -15.43762 -15.31899 -14.85716 -14.66488 -14.20764 -13.97651 -13.75130 -13.10042 -12.90208 -12.75366 -12.53108 -12.20450 -12.07921 -11.58674 -11.35178 -11.03762 -10.95570 -10.81718 -10.74606 -10.66743 -10.52467 -10.25940 -10.22478 -9.88912 -9.71723 -9.26776 -8.70435 -8.47216 -8.32647 -7.17518 -6.77065 -5.94573 -3.94498 2.76658 3.33676 3.40881 3.42954 3.64421 4.44980 4.49587 4.86445 5.08022 5.11290 5.18684 5.41371 5.44206 5.54744 5.62468 5.71654 5.78446 5.82063 5.84681 5.97354 6.09259 6.09679 6.15528 6.21151 6.23831 6.31557 6.43618 6.50690 6.57199 6.69122 6.75519 6.95407 7.29791 7.76970 7.80126 7.97040 8.09378 8.28529 8.59228 9.05969 9.66781 11.13719 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.010991 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.364068 B = 2546.973154 C = 3945.749443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.478 4.478 8 H 0.063 0.937 9 C 0.224 3.776 10 H 0.043 0.957 11 C -0.036 4.036 12 S -0.344 6.344 13 C -0.064 4.064 14 C 0.057 3.943 15 N -0.548 5.548 16 C 0.074 3.926 17 C 0.057 3.943 18 H 0.040 0.960 19 C -0.147 4.147 20 C -0.118 4.118 21 C -0.154 4.154 22 C 0.056 3.944 23 O -0.311 6.311 24 H 0.259 0.741 25 H 0.060 0.940 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -6.872 -6.750 10.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.117 3.883 10 H 0.060 0.940 11 C -0.184 4.184 12 S -0.118 6.118 13 C -0.213 4.213 14 C -0.073 4.073 15 N -0.271 5.271 16 C -0.054 4.054 17 C -0.003 4.003 18 H 0.058 0.942 19 C -0.186 4.186 20 C -0.156 4.156 21 C -0.192 4.192 22 C -0.022 4.022 23 O -0.228 6.228 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.140 0.860 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.590 -6.875 -5.887 9.737 hybrid contribution 1.251 1.033 -1.360 2.117 sum 4.841 -5.842 -7.247 10.492 Atomic orbital electron populations 1.69886 1.05742 1.26299 1.50947 1.24788 0.94666 0.98622 0.95165 0.86654 0.79815 0.83917 0.77878 1.20902 1.21590 1.20126 1.20949 0.92593 0.89135 1.49103 0.91947 1.19415 0.89985 0.87041 0.91907 0.93962 1.24061 0.99755 0.91692 1.02878 1.86531 1.22724 1.10353 1.92180 1.23278 0.98669 0.98580 1.00795 1.22101 0.96870 0.93186 0.95168 1.61420 1.16715 1.03281 1.45726 1.22231 0.93890 1.02467 0.86836 1.22837 0.90999 0.89583 0.96926 0.94172 1.22170 0.98952 1.02152 0.95288 1.21543 0.98595 0.98203 0.97225 1.22194 0.98710 0.98932 0.99386 1.22465 0.93799 1.00553 0.85397 1.88705 1.58505 1.45735 1.29847 0.93134 0.92117 0.85987 0.89399 0.90250 0.94478 0.91941 0.87992 0.92038 0.91052 0.91938 0.92555 0.92361 0.92035 0.91268 0.94803 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 11.71 55.43 0.65 -23.87 16 2 C 0.07 1.83 5.32 -17.82 -0.09 1.73 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.48 -12.20 6.22 -34.44 -0.21 -12.41 16 8 H 0.06 1.60 5.66 -52.48 -0.30 1.31 16 9 C 0.22 5.34 1.01 -68.97 -0.07 5.27 16 10 H 0.04 1.16 6.28 -51.93 -0.33 0.83 16 11 C -0.04 -0.86 5.81 37.28 0.22 -0.64 16 12 S -0.34 -7.35 22.40 -107.50 -2.41 -9.76 16 13 C -0.06 -1.13 6.69 37.29 0.25 -0.88 16 14 C 0.06 1.02 4.46 -3.93 -0.02 1.00 16 15 N -0.55 -11.22 4.50 -228.43 -1.03 -12.24 16 16 C 0.07 1.36 4.79 -3.82 -0.02 1.34 16 17 C 0.06 0.99 2.41 -26.68 -0.06 0.93 16 18 H 0.04 0.70 6.50 -51.93 -0.34 0.37 16 19 C -0.15 -2.12 5.42 -26.59 -0.14 -2.27 16 20 C -0.12 -1.55 6.03 -26.54 -0.16 -1.71 16 21 C -0.15 -2.24 6.14 -26.59 -0.16 -2.40 16 22 C 0.06 0.98 6.84 37.21 0.25 1.24 16 23 O -0.31 -6.46 6.27 -35.23 -0.22 -6.68 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.12 3.26 6.48 -51.93 -0.34 2.92 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.04 0.72 6.96 -51.93 -0.36 0.36 16 30 H 0.06 0.96 7.91 -51.93 -0.41 0.55 16 31 H 0.10 2.08 5.41 -51.93 -0.28 1.80 16 32 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 308.00 15.07 4.64 4.64 Total: -1.00 -27.40 308.00 -10.17 -37.56 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.55 Total: 3.26 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.23 Total: -8.81 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.38 Total: -36.12 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.22 Total: -6.68 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -2.41 Total: -9.76 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.40 -10.17 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.661 kcal (2) G-P(sol) polarization free energy of solvation -27.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds