Wall clock time and date at job start Mon Mar 30 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99897 * 2 1 4 4 H 1.48493 * 109.47478 * 270.27303 * 3 2 1 5 5 H 1.48507 * 109.47176 * 30.27760 * 3 2 1 6 6 H 1.48499 * 109.47054 * 150.27436 * 3 2 1 7 7 C 1.37877 * 120.00072 * 180.27412 * 2 1 3 8 8 H 1.07996 * 119.99867 * 179.72566 * 7 2 1 9 9 C 1.50699 * 120.00021 * 359.72676 * 7 2 1 10 10 H 1.09005 * 109.40394 * 305.75398 * 9 7 2 11 11 C 1.53250 * 109.40383 * 65.58788 * 9 7 2 12 12 S 1.81901 * 108.50410 * 182.12411 * 11 9 7 13 13 C 1.81904 * 101.91575 * 308.69824 * 12 11 9 14 14 C 1.53247 * 108.50482 * 51.30298 * 13 12 11 15 15 N 1.46465 * 109.40682 * 185.91009 * 9 7 2 16 16 C 1.46899 * 111.00034 * 42.11407 * 15 9 7 17 17 C 1.53002 * 109.46896 * 74.69080 * 16 15 9 18 18 H 1.08997 * 109.48298 * 54.15467 * 17 16 15 19 19 C 1.53096 * 109.47601 * 174.18557 * 17 16 15 20 20 C 1.53174 * 109.15817 * 177.58823 * 19 17 16 21 21 C 1.53175 * 109.04186 * 303.01877 * 20 19 17 22 22 C 1.53092 * 109.16194 * 56.98166 * 21 20 19 23 23 O 1.42901 * 109.47910 * 294.12416 * 17 16 15 24 24 H 0.97001 * 119.99972 * 359.72207 * 1 2 3 25 25 H 1.08997 * 109.63566 * 301.82922 * 11 9 7 26 26 H 1.08992 * 109.63160 * 62.42557 * 11 9 7 27 27 H 1.08990 * 109.63474 * 171.01019 * 13 12 11 28 28 H 1.09005 * 109.62658 * 291.40147 * 13 12 11 29 29 H 1.09004 * 109.40624 * 58.11710 * 14 13 12 30 30 H 1.08999 * 109.40772 * 177.95878 * 14 13 12 31 31 H 1.09001 * 109.46692 * 194.68602 * 16 15 9 32 32 H 1.08995 * 109.47169 * 314.68585 * 16 15 9 33 33 H 1.08996 * 109.52314 * 297.49588 * 19 17 16 34 34 H 1.09001 * 109.52129 * 57.68892 * 19 17 16 35 35 H 1.09000 * 109.54097 * 183.15635 * 20 19 17 36 36 H 1.08995 * 109.54726 * 62.89183 * 20 19 17 37 37 H 1.09002 * 109.52082 * 297.07770 * 21 20 19 38 38 H 1.08998 * 109.52677 * 176.89034 * 21 20 19 39 39 H 1.08996 * 109.48299 * 182.41467 * 22 21 20 40 40 H 1.08993 * 109.47878 * 62.37642 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4909 2.0498 -1.4000 5 1 1.4495 2.6510 0.7059 6 1 3.5496 1.4385 0.6942 7 6 2.0046 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0102 9 6 1.2511 -2.4991 -0.0057 10 1 0.5532 -2.5144 0.8315 11 6 0.4737 -2.6382 -1.3191 12 16 -0.4752 -4.1892 -1.2668 13 6 0.8041 -5.3968 -0.8039 14 6 1.5359 -4.8778 0.4385 15 7 2.1984 -3.6079 0.1299 16 6 3.2317 -3.2985 1.1272 17 6 2.6344 -3.4087 2.5315 18 1 2.1745 -4.3891 2.6550 19 6 3.7422 -3.2294 3.5728 20 6 3.1273 -3.2807 4.9748 21 6 2.0451 -2.2024 5.0857 22 6 1.0030 -2.4214 3.9859 23 8 1.6457 -2.3925 2.7098 24 1 -0.4850 0.8400 0.0041 25 1 -0.2081 -1.7954 -1.4321 26 1 1.1710 -2.6637 -2.1564 27 1 0.3381 -6.3563 -0.5803 28 1 1.5103 -5.5153 -1.6257 29 1 0.8182 -4.7265 1.2448 30 1 2.2825 -5.6081 0.7506 31 1 4.0564 -4.0042 1.0267 32 1 3.5992 -2.2850 0.9671 33 1 4.4748 -4.0294 3.4668 34 1 4.2295 -2.2658 3.4240 35 1 3.9019 -3.0978 5.7196 36 1 2.6830 -4.2618 5.1424 37 1 2.4983 -1.2181 4.9673 38 1 1.5641 -2.2679 6.0616 39 1 0.2532 -1.6316 4.0331 40 1 0.5217 -3.3888 4.1286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260113689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:52 Heat of formation + Delta-G solvation = -40.743397 kcal Electronic energy + Delta-G solvation = -20749.627390 eV Core-core repulsion = 17883.453764 eV Total energy + Delta-G solvation = -2866.173627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27046 -36.99795 -33.16238 -33.00917 -31.77595 -30.12061 -28.72527 -25.45081 -25.17261 -23.46769 -22.46350 -21.52880 -19.92956 -19.19843 -16.59309 -15.89030 -15.50389 -15.34462 -14.88765 -14.68113 -14.26258 -13.99438 -13.80285 -13.12917 -12.92617 -12.76284 -12.54531 -12.20767 -12.17665 -11.58855 -11.36268 -11.05662 -11.00746 -10.86511 -10.79950 -10.66010 -10.58351 -10.27855 -10.22426 -9.94081 -9.73806 -9.22661 -8.82056 -8.50943 -8.34852 -7.19026 -6.76911 -5.98214 -4.00167 2.76935 3.31868 3.39282 3.41063 3.64137 4.37605 4.44953 4.86169 5.03449 5.07033 5.13599 5.36324 5.38693 5.51585 5.60104 5.68828 5.75187 5.79949 5.83477 5.92959 6.04030 6.08763 6.10921 6.16236 6.26809 6.27658 6.40847 6.48381 6.52692 6.68590 6.74727 6.96159 7.30475 7.74889 7.80684 7.94029 7.99464 8.27067 8.57561 9.02682 9.62228 11.09640 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.010837 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.444589 B = 2583.011070 C = 4043.858341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.490 4.490 8 H 0.064 0.936 9 C 0.222 3.778 10 H 0.044 0.956 11 C -0.035 4.035 12 S -0.344 6.344 13 C -0.065 4.065 14 C 0.057 3.943 15 N -0.546 5.546 16 C 0.067 3.933 17 C 0.059 3.941 18 H 0.043 0.957 19 C -0.148 4.148 20 C -0.119 4.119 21 C -0.154 4.154 22 C 0.057 3.943 23 O -0.326 6.326 24 H 0.260 0.740 25 H 0.121 0.879 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 -7.432 6.906 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.530 4.530 8 H 0.082 0.918 9 C 0.115 3.885 10 H 0.062 0.938 11 C -0.183 4.183 12 S -0.117 6.117 13 C -0.213 4.213 14 C -0.073 4.073 15 N -0.269 5.269 16 C -0.062 4.062 17 C -0.001 4.001 18 H 0.061 0.939 19 C -0.186 4.186 20 C -0.156 4.156 21 C -0.192 4.192 22 C -0.021 4.021 23 O -0.244 6.244 24 H 0.070 0.930 25 H 0.139 0.861 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.656 -7.419 6.060 10.253 hybrid contribution 1.281 0.974 1.294 2.065 sum 4.937 -6.445 7.354 10.954 Atomic orbital electron populations 1.69895 1.05779 1.26467 1.50452 1.24847 0.94743 0.98806 0.95059 0.86611 0.79840 0.83726 0.77859 1.20918 1.21435 1.20024 1.21015 0.92678 0.89315 1.50003 0.91764 1.19407 0.90070 0.87043 0.92012 0.93812 1.24035 0.99726 0.91727 1.02827 1.86523 1.22809 1.10199 1.92172 1.23282 0.98706 0.98561 1.00796 1.22107 0.96825 0.93174 0.95150 1.61459 1.16690 1.03190 1.45591 1.22348 0.93707 1.04090 0.86022 1.22900 0.89167 0.91125 0.96954 0.93884 1.22174 0.98799 1.02614 0.95050 1.21546 0.98151 0.98726 0.97191 1.22185 0.97914 0.99871 0.99251 1.22471 0.94410 1.00610 0.84580 1.88506 1.52658 1.52277 1.30912 0.93002 0.86067 0.92101 0.89433 0.90274 0.94278 0.92004 0.91901 0.87294 0.91772 0.90960 0.92246 0.92499 0.91157 0.91889 0.89316 0.94587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 11.73 55.43 0.65 -24.02 16 2 C 0.07 1.80 5.32 -17.82 -0.09 1.70 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.49 -12.64 6.97 -34.44 -0.24 -12.88 16 8 H 0.06 1.65 5.74 -52.49 -0.30 1.35 16 9 C 0.22 5.35 1.04 -68.97 -0.07 5.28 16 10 H 0.04 1.21 6.28 -51.93 -0.33 0.88 16 11 C -0.04 -0.85 5.81 37.29 0.22 -0.63 16 12 S -0.34 -7.36 22.40 -107.50 -2.41 -9.77 16 13 C -0.06 -1.14 6.69 37.29 0.25 -0.89 16 14 C 0.06 1.04 4.11 -3.91 -0.02 1.02 16 15 N -0.55 -11.26 4.50 -228.39 -1.03 -12.29 16 16 C 0.07 1.24 4.87 -3.82 -0.02 1.22 16 17 C 0.06 1.01 2.26 -26.68 -0.06 0.95 16 18 H 0.04 0.73 6.34 -51.93 -0.33 0.40 16 19 C -0.15 -2.11 5.42 -26.59 -0.14 -2.25 16 20 C -0.12 -1.51 6.03 -26.55 -0.16 -1.67 16 21 C -0.15 -2.14 6.14 -26.59 -0.16 -2.30 16 22 C 0.06 0.96 6.84 37.20 0.25 1.21 16 23 O -0.33 -6.66 7.30 -35.23 -0.26 -6.92 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.12 3.25 6.49 -51.93 -0.34 2.92 16 26 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.04 0.77 6.99 -51.93 -0.36 0.41 16 30 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.11 2.28 5.08 -51.93 -0.26 2.02 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -27.74 309.10 -10.19 -37.93 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.54 Total: 3.76 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.25 Total: -9.24 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.38 Total: -36.31 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.26 Total: -6.92 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -7.36 SS G_CDS: -2.41 Total: -9.77 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.74 -10.19 -37.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.812 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds