Wall clock time and date at job start Mon Mar 30 2020 05:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99897 * 2 1 4 4 H 1.48493 * 109.47478 * 270.27303 * 3 2 1 5 5 H 1.48507 * 109.47176 * 30.27760 * 3 2 1 6 6 H 1.48499 * 109.47054 * 150.27436 * 3 2 1 7 7 C 1.37877 * 120.00072 * 180.27412 * 2 1 3 8 8 H 1.07996 * 119.99867 * 179.72566 * 7 2 1 9 9 C 1.50699 * 120.00021 * 359.72676 * 7 2 1 10 10 H 1.09005 * 109.40394 * 305.75398 * 9 7 2 11 11 C 1.53250 * 109.40383 * 65.58788 * 9 7 2 12 12 S 1.81901 * 108.50410 * 182.12411 * 11 9 7 13 13 C 1.81904 * 101.91575 * 308.69824 * 12 11 9 14 14 C 1.53247 * 108.50482 * 51.30298 * 13 12 11 15 15 N 1.46465 * 109.40682 * 185.91009 * 9 7 2 16 16 C 1.46899 * 111.00034 * 42.11407 * 15 9 7 17 17 C 1.53002 * 109.46896 * 74.69080 * 16 15 9 18 18 H 1.08997 * 109.48298 * 54.15467 * 17 16 15 19 19 C 1.53096 * 109.47601 * 174.18557 * 17 16 15 20 20 C 1.53174 * 109.15817 * 177.58823 * 19 17 16 21 21 C 1.53175 * 109.04186 * 303.01877 * 20 19 17 22 22 C 1.53092 * 109.16194 * 56.98166 * 21 20 19 23 23 O 1.42901 * 109.47910 * 294.12416 * 17 16 15 24 24 H 0.97001 * 119.99972 * 359.72207 * 1 2 3 25 25 H 1.08997 * 109.63566 * 301.82922 * 11 9 7 26 26 H 1.08992 * 109.63160 * 62.42557 * 11 9 7 27 27 H 1.08990 * 109.63474 * 171.01019 * 13 12 11 28 28 H 1.09005 * 109.62658 * 291.40147 * 13 12 11 29 29 H 1.09004 * 109.40624 * 58.11710 * 14 13 12 30 30 H 1.08999 * 109.40772 * 177.95878 * 14 13 12 31 31 H 1.09001 * 109.46692 * 194.68602 * 16 15 9 32 32 H 1.08995 * 109.47169 * 314.68585 * 16 15 9 33 33 H 1.08996 * 109.52314 * 297.49588 * 19 17 16 34 34 H 1.09001 * 109.52129 * 57.68892 * 19 17 16 35 35 H 1.09000 * 109.54097 * 183.15635 * 20 19 17 36 36 H 1.08995 * 109.54726 * 62.89183 * 20 19 17 37 37 H 1.09002 * 109.52082 * 297.07770 * 21 20 19 38 38 H 1.08998 * 109.52677 * 176.89034 * 21 20 19 39 39 H 1.08996 * 109.48299 * 182.41467 * 22 21 20 40 40 H 1.08993 * 109.47878 * 62.37642 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4909 2.0498 -1.4000 5 1 1.4495 2.6510 0.7059 6 1 3.5496 1.4385 0.6942 7 6 2.0046 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0102 9 6 1.2511 -2.4991 -0.0057 10 1 0.5532 -2.5144 0.8315 11 6 0.4737 -2.6382 -1.3191 12 16 -0.4752 -4.1892 -1.2668 13 6 0.8041 -5.3968 -0.8039 14 6 1.5359 -4.8778 0.4385 15 7 2.1984 -3.6079 0.1299 16 6 3.2317 -3.2985 1.1272 17 6 2.6344 -3.4087 2.5315 18 1 2.1745 -4.3891 2.6550 19 6 3.7422 -3.2294 3.5728 20 6 3.1273 -3.2807 4.9748 21 6 2.0451 -2.2024 5.0857 22 6 1.0030 -2.4214 3.9859 23 8 1.6457 -2.3925 2.7098 24 1 -0.4850 0.8400 0.0041 25 1 -0.2081 -1.7954 -1.4321 26 1 1.1710 -2.6637 -2.1564 27 1 0.3381 -6.3563 -0.5803 28 1 1.5103 -5.5153 -1.6257 29 1 0.8182 -4.7265 1.2448 30 1 2.2825 -5.6081 0.7506 31 1 4.0564 -4.0042 1.0267 32 1 3.5992 -2.2850 0.9671 33 1 4.4748 -4.0294 3.4668 34 1 4.2295 -2.2658 3.4240 35 1 3.9019 -3.0978 5.7196 36 1 2.6830 -4.2618 5.1424 37 1 2.4983 -1.2181 4.9673 38 1 1.5641 -2.2679 6.0616 39 1 0.2532 -1.6316 4.0331 40 1 0.5217 -3.3888 4.1286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260113689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:51 Heat of formation + Delta-G solvation = -57.497988 kcal Electronic energy + Delta-G solvation = -20750.353924 eV Core-core repulsion = 17883.453764 eV Total energy + Delta-G solvation = -2866.900160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65789 -38.54193 -34.94204 -34.37472 -33.14822 -31.88586 -30.25622 -27.27152 -26.73041 -24.75072 -23.97051 -23.08698 -21.20615 -20.79729 -18.43948 -17.48824 -17.02908 -16.83417 -16.47762 -16.29081 -15.62022 -15.42062 -15.24097 -14.66469 -14.58788 -14.26884 -14.07928 -13.90182 -13.38303 -12.99862 -12.90172 -12.82176 -12.72511 -12.43202 -12.34882 -12.10311 -12.01456 -11.90162 -11.71042 -11.57903 -11.18842 -10.89261 -10.49540 -10.24214 -10.13484 -8.84211 -8.50007 -8.02248 -6.08776 1.13617 1.42692 1.44254 1.52292 1.87547 2.47840 3.05985 3.28805 3.38476 3.87298 3.96996 4.02735 4.13415 4.16115 4.27213 4.35462 4.45431 4.49430 4.56092 4.68567 4.72109 4.76909 4.85469 4.89263 4.91107 4.96531 5.01982 5.11113 5.14121 5.20622 5.26424 5.41954 5.53132 5.76211 5.85553 6.14580 6.38781 6.64801 6.81680 7.02994 7.56738 9.04813 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.010837 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.444589 B = 2583.011070 C = 4043.858341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.022 3.978 3 Si 0.946 3.054 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.239 3.761 10 H 0.007 0.993 11 C -0.032 4.032 12 S -0.362 6.362 13 C -0.053 4.053 14 C 0.059 3.941 15 N -0.553 5.553 16 C 0.065 3.935 17 C 0.059 3.941 18 H 0.050 0.950 19 C -0.143 4.143 20 C -0.114 4.114 21 C -0.148 4.148 22 C 0.052 3.948 23 O -0.370 6.370 24 H 0.256 0.744 25 H 0.087 0.913 26 H 0.053 0.947 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.022 0.978 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 -9.521 8.059 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.773 3.227 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.131 3.869 10 H 0.024 0.976 11 C -0.181 4.181 12 S -0.135 6.135 13 C -0.201 4.201 14 C -0.070 4.070 15 N -0.276 5.276 16 C -0.063 4.063 17 C -0.001 4.001 18 H 0.068 0.932 19 C -0.181 4.181 20 C -0.151 4.151 21 C -0.186 4.186 22 C -0.026 4.026 23 O -0.289 6.289 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.108 0.892 29 H 0.040 0.960 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.552 -9.521 7.221 13.176 hybrid contribution 0.694 1.523 0.935 1.917 sum 6.246 -7.997 8.156 13.019 Atomic orbital electron populations 1.70038 1.07069 1.26696 1.52014 1.25504 0.95322 1.01672 0.95234 0.85747 0.78851 0.80346 0.77775 1.20602 1.21788 1.19318 1.21286 0.92721 0.90370 1.48615 0.91920 1.18969 0.89701 0.87905 0.90345 0.97578 1.23676 0.99207 0.92593 1.02586 1.86489 1.24662 1.09842 1.92504 1.23455 0.97536 0.98194 1.00902 1.22165 0.97400 0.92672 0.94787 1.61427 1.16201 1.03071 1.46934 1.22388 0.93954 1.03335 0.86605 1.22927 0.89518 0.90635 0.96991 0.93191 1.22130 0.98153 1.02826 0.95030 1.21550 0.98162 0.98714 0.96709 1.22123 0.97595 0.99764 0.99086 1.22550 0.95032 1.00368 0.84601 1.88440 1.53896 1.53668 1.32864 0.93460 0.89502 0.92855 0.85950 0.89201 0.95951 0.88067 0.88529 0.90225 0.89082 0.92421 0.89956 0.91234 0.92568 0.89486 0.91242 0.93779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.35 11.73 21.45 0.25 -53.10 16 2 C 0.02 1.19 5.32 84.65 0.45 1.64 16 3 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.49 -25.94 6.97 25.60 0.18 -25.76 16 8 H 0.06 3.29 5.74 -2.91 -0.02 3.27 16 9 C 0.24 11.79 1.04 44.34 0.05 11.84 16 10 H 0.01 0.38 6.28 -2.38 -0.01 0.36 16 11 C -0.03 -1.59 5.81 72.07 0.42 -1.17 16 12 S -0.36 -15.42 22.40 -56.49 -1.27 -16.68 16 13 C -0.05 -1.71 6.69 72.06 0.48 -1.23 16 14 C 0.06 1.99 4.11 86.46 0.35 2.35 16 15 N -0.55 -22.23 4.50 -876.51 -3.94 -26.18 16 16 C 0.06 2.31 4.87 86.30 0.42 2.73 16 17 C 0.06 1.93 2.26 30.63 0.07 2.00 16 18 H 0.05 1.57 6.34 -2.39 -0.02 1.55 16 19 C -0.14 -3.69 5.42 30.68 0.17 -3.52 16 20 C -0.11 -2.53 6.03 30.71 0.19 -2.35 16 21 C -0.15 -3.87 6.14 30.68 0.19 -3.69 16 22 C 0.05 1.75 6.84 72.01 0.49 2.24 16 23 O -0.37 -15.33 7.30 -148.98 -1.09 -16.42 16 24 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.09 4.91 6.49 -2.39 -0.02 4.90 16 26 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 29 H 0.02 0.84 6.99 -2.39 -0.02 0.83 16 30 H 0.10 2.67 7.92 -2.39 -0.02 2.65 16 31 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.08 3.32 5.08 -2.39 -0.01 3.31 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -62.65 309.10 0.44 -62.21 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.01 Total: 19.07 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 3.45 Total: -14.93 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -3.69 Total: -79.27 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.09 Total: -16.42 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -15.42 SS G_CDS: -1.27 Total: -16.68 kcal Total: -62.65 0.44 -62.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.712 kcal (2) G-P(sol) polarization free energy of solvation -62.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds