Wall clock time and date at job start Mon Mar 30 2020 05:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47471 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47314 * 120.00259 * 3 2 1 6 6 H 1.48503 * 109.47155 * 240.00285 * 3 2 1 7 7 C 1.37877 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99916 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.40746 * 54.24554 * 9 7 2 11 11 C 1.53249 * 109.40272 * 294.40832 * 9 7 2 12 12 S 1.81902 * 108.50576 * 177.87938 * 11 9 7 13 13 C 1.81907 * 101.91203 * 51.30423 * 12 11 9 14 14 C 1.53243 * 108.50656 * 308.69463 * 13 12 11 15 15 N 1.46467 * 109.40651 * 174.09498 * 9 7 2 16 16 C 1.46903 * 110.99743 * 317.88032 * 15 9 7 17 17 C 1.53000 * 109.47296 * 164.60241 * 16 15 9 18 18 H 1.08997 * 109.48160 * 59.97491 * 17 16 15 19 19 C 1.53094 * 109.48236 * 180.02562 * 17 16 15 20 20 C 1.53171 * 109.16216 * 177.58746 * 19 17 16 21 21 C 1.53176 * 109.03770 * 303.01810 * 20 19 17 22 22 C 1.53088 * 109.16279 * 56.98085 * 21 20 19 23 23 O 1.42902 * 109.47494 * 299.94051 * 17 16 15 24 24 H 0.96995 * 119.99754 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.63349 * 297.58019 * 11 9 7 26 26 H 1.09000 * 109.63397 * 58.17558 * 11 9 7 27 27 H 1.09004 * 109.62844 * 68.40075 * 13 12 11 28 28 H 1.08998 * 109.62893 * 188.98982 * 13 12 11 29 29 H 1.08997 * 109.40771 * 182.12310 * 14 13 12 30 30 H 1.09000 * 109.40524 * 301.88784 * 14 13 12 31 31 H 1.09006 * 109.46929 * 284.59916 * 16 15 9 32 32 H 1.09002 * 109.47083 * 44.59635 * 16 15 9 33 33 H 1.08998 * 109.51769 * 297.49125 * 19 17 16 34 34 H 1.08996 * 109.52439 * 57.68112 * 19 17 16 35 35 H 1.09001 * 109.54492 * 62.88399 * 20 19 17 36 36 H 1.09007 * 109.54157 * 183.05914 * 20 19 17 37 37 H 1.09007 * 109.52140 * 176.88706 * 21 20 19 38 38 H 1.09002 * 109.51817 * 297.00760 * 21 20 19 39 39 H 1.08997 * 109.47914 * 62.37764 * 22 21 20 40 40 H 1.09007 * 109.47535 * 182.40002 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1029 1.6964 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.5501 -2.5119 -0.8362 11 6 0.4787 -2.6423 1.3142 12 16 -0.4704 -4.1931 1.2608 13 6 0.8072 -5.3992 0.7894 14 6 1.5343 -4.8765 -0.4542 15 7 2.1978 -3.6076 -0.1442 16 6 3.2274 -3.2952 -1.1444 17 6 4.3935 -4.2750 -0.9992 18 1 4.0345 -5.2926 -1.1526 19 6 5.4669 -3.9492 -2.0410 20 6 6.6564 -4.8952 -1.8501 21 6 7.1778 -4.7593 -0.4163 22 6 6.0383 -5.0537 0.5628 23 8 4.9529 -4.1591 0.3107 24 1 -0.4849 0.8400 0.0004 25 1 1.1792 -2.6703 2.1488 26 1 -0.2028 -1.7998 1.4323 27 1 1.5185 -5.5175 1.6068 28 1 0.3403 -6.3581 0.5646 29 1 2.2786 -5.6065 -0.7721 30 1 0.8135 -4.7227 -1.2573 31 1 2.8014 -3.3830 -2.1439 32 1 3.5864 -2.2776 -0.9906 33 1 5.0547 -4.0796 -3.0416 34 1 5.7972 -2.9184 -1.9136 35 1 6.3372 -5.9224 -2.0262 36 1 7.4470 -4.6334 -2.5534 37 1 7.9892 -5.4690 -0.2549 38 1 7.5438 -3.7451 -0.2564 39 1 5.7011 -6.0816 0.4295 40 1 6.3926 -4.9169 1.5846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260113701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:57 Heat of formation + Delta-G solvation = -45.854621 kcal Electronic energy + Delta-G solvation = -20115.805629 eV Core-core repulsion = 17249.410363 eV Total energy + Delta-G solvation = -2866.395266 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.25746 -37.21023 -33.38402 -33.15629 -31.95803 -30.26149 -28.82262 -25.64171 -25.31645 -23.72619 -22.44688 -21.29590 -19.99740 -19.54002 -16.71527 -16.04150 -15.84729 -15.41896 -14.95986 -14.67621 -14.45301 -14.12655 -13.87938 -13.23876 -13.08890 -12.79492 -12.61103 -12.47991 -12.27625 -11.56401 -11.51022 -11.35933 -11.04855 -11.03560 -10.91761 -10.89264 -10.52084 -10.44253 -10.34081 -10.06002 -9.85695 -9.19797 -9.02303 -8.63801 -8.46419 -7.25743 -6.80451 -6.13237 -4.19571 2.75532 3.26705 3.32588 3.35149 3.60485 4.14858 4.33086 4.64721 4.86988 4.95630 4.98794 5.19716 5.24572 5.34395 5.51376 5.56263 5.59612 5.76534 5.78166 5.85006 5.86325 5.95452 5.98088 6.08801 6.15198 6.18852 6.25038 6.38822 6.48048 6.64472 6.66334 6.87653 7.20965 7.52456 7.65565 7.70774 7.90681 8.15621 8.47845 8.89103 9.46240 10.93534 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.007842 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.429915 B = 3569.772760 C = 5049.028802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.221 3.779 10 H 0.018 0.982 11 C -0.030 4.030 12 S -0.343 6.343 13 C -0.062 4.062 14 C 0.056 3.944 15 N -0.537 5.537 16 C 0.067 3.933 17 C 0.096 3.904 18 H 0.046 0.954 19 C -0.152 4.152 20 C -0.119 4.119 21 C -0.156 4.156 22 C 0.058 3.942 23 O -0.350 6.350 24 H 0.265 0.735 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.903 -9.724 -2.590 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.092 0.908 9 C 0.113 3.887 10 H 0.036 0.964 11 C -0.178 4.178 12 S -0.116 6.116 13 C -0.211 4.211 14 C -0.074 4.074 15 N -0.262 5.262 16 C -0.061 4.061 17 C 0.037 3.963 18 H 0.064 0.936 19 C -0.190 4.190 20 C -0.157 4.157 21 C -0.194 4.194 22 C -0.019 4.019 23 O -0.268 6.268 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.139 0.861 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.747 -9.708 -1.776 13.188 hybrid contribution 1.374 0.892 -1.127 1.988 sum 10.121 -8.816 -2.903 13.733 Atomic orbital electron populations 1.69900 1.05936 1.27190 1.49416 1.25000 0.94905 0.99375 0.94697 0.86551 0.79513 0.82579 0.78811 1.21252 1.19996 1.20177 1.21222 0.93417 0.89213 1.51479 0.90834 1.19306 0.89564 0.87671 0.92111 0.96430 1.23911 0.99622 0.91838 1.02422 1.86514 1.22844 1.10182 1.92062 1.23260 0.98603 0.98406 1.00836 1.22166 0.96646 0.93501 0.95125 1.61131 1.15603 1.02656 1.46781 1.22135 0.90277 1.00979 0.92675 1.22252 0.92708 0.98619 0.82688 0.93616 1.22200 0.96424 1.00673 0.99706 1.21556 0.97965 0.99535 0.96640 1.22202 0.98743 1.02572 0.95888 1.22489 0.87405 0.93304 0.98734 1.88172 1.47764 1.59601 1.31265 0.92524 0.91597 0.86110 0.90059 0.89406 0.91724 0.94739 0.94733 0.87173 0.91250 0.90785 0.92277 0.91930 0.91618 0.91126 0.94061 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 11.74 55.43 0.65 -23.91 16 2 C 0.06 1.68 5.32 -17.82 -0.09 1.59 16 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.51 -13.41 7.57 -34.44 -0.26 -13.67 16 8 H 0.07 1.92 5.74 -52.49 -0.30 1.61 16 9 C 0.22 5.45 1.78 -68.97 -0.12 5.33 16 10 H 0.02 0.50 7.91 -51.93 -0.41 0.09 16 11 C -0.03 -0.73 5.80 37.29 0.22 -0.51 16 12 S -0.34 -7.37 22.40 -107.50 -2.41 -9.77 16 13 C -0.06 -1.12 6.69 37.28 0.25 -0.87 16 14 C 0.06 1.03 5.27 -3.91 -0.02 1.01 16 15 N -0.54 -11.34 4.15 -228.40 -0.95 -12.29 16 16 C 0.07 1.28 4.36 -3.82 -0.02 1.27 16 17 C 0.10 1.52 2.62 -26.68 -0.07 1.45 16 18 H 0.05 0.70 6.41 -51.93 -0.33 0.36 16 19 C -0.15 -2.00 5.42 -26.59 -0.14 -2.14 16 20 C -0.12 -1.31 6.03 -26.55 -0.16 -1.47 16 21 C -0.16 -1.73 6.14 -26.59 -0.16 -1.89 16 22 C 0.06 0.76 6.84 37.20 0.25 1.01 16 23 O -0.35 -6.05 10.27 -35.23 -0.36 -6.42 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 26 H 0.12 3.23 6.50 -51.93 -0.34 2.89 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.06 1.04 6.09 -51.93 -0.32 0.72 16 30 H 0.03 0.67 7.91 -51.93 -0.41 0.26 16 31 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.11 2.36 5.05 -51.93 -0.26 2.10 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.05 8.14 -51.92 -0.42 0.62 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -27.82 314.81 -10.25 -38.08 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.58 Total: 2.85 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.33 Total: -8.90 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.30 Total: -36.20 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.36 Total: -6.42 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -7.37 SS G_CDS: -2.41 Total: -9.77 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.82 -10.25 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.779 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds