Wall clock time and date at job start Mon Mar 30 2020 05:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47471 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47314 * 120.00259 * 3 2 1 6 6 H 1.48503 * 109.47155 * 240.00285 * 3 2 1 7 7 C 1.37877 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99916 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.40746 * 54.24554 * 9 7 2 11 11 C 1.53249 * 109.40272 * 294.40832 * 9 7 2 12 12 S 1.81902 * 108.50576 * 177.87938 * 11 9 7 13 13 C 1.81907 * 101.91203 * 51.30423 * 12 11 9 14 14 C 1.53243 * 108.50656 * 308.69463 * 13 12 11 15 15 N 1.46467 * 109.40651 * 174.09498 * 9 7 2 16 16 C 1.46903 * 110.99743 * 317.88032 * 15 9 7 17 17 C 1.53000 * 109.47296 * 164.60241 * 16 15 9 18 18 H 1.08997 * 109.48160 * 59.97491 * 17 16 15 19 19 C 1.53094 * 109.48236 * 180.02562 * 17 16 15 20 20 C 1.53171 * 109.16216 * 177.58746 * 19 17 16 21 21 C 1.53176 * 109.03770 * 303.01810 * 20 19 17 22 22 C 1.53088 * 109.16279 * 56.98085 * 21 20 19 23 23 O 1.42902 * 109.47494 * 299.94051 * 17 16 15 24 24 H 0.96995 * 119.99754 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.63349 * 297.58019 * 11 9 7 26 26 H 1.09000 * 109.63397 * 58.17558 * 11 9 7 27 27 H 1.09004 * 109.62844 * 68.40075 * 13 12 11 28 28 H 1.08998 * 109.62893 * 188.98982 * 13 12 11 29 29 H 1.08997 * 109.40771 * 182.12310 * 14 13 12 30 30 H 1.09000 * 109.40524 * 301.88784 * 14 13 12 31 31 H 1.09006 * 109.46929 * 284.59916 * 16 15 9 32 32 H 1.09002 * 109.47083 * 44.59635 * 16 15 9 33 33 H 1.08998 * 109.51769 * 297.49125 * 19 17 16 34 34 H 1.08996 * 109.52439 * 57.68112 * 19 17 16 35 35 H 1.09001 * 109.54492 * 62.88399 * 20 19 17 36 36 H 1.09007 * 109.54157 * 183.05914 * 20 19 17 37 37 H 1.09007 * 109.52140 * 176.88706 * 21 20 19 38 38 H 1.09002 * 109.51817 * 297.00760 * 21 20 19 39 39 H 1.08997 * 109.47914 * 62.37764 * 22 21 20 40 40 H 1.09007 * 109.47535 * 182.40002 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1029 1.6964 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.5501 -2.5119 -0.8362 11 6 0.4787 -2.6423 1.3142 12 16 -0.4704 -4.1931 1.2608 13 6 0.8072 -5.3992 0.7894 14 6 1.5343 -4.8765 -0.4542 15 7 2.1978 -3.6076 -0.1442 16 6 3.2274 -3.2952 -1.1444 17 6 4.3935 -4.2750 -0.9992 18 1 4.0345 -5.2926 -1.1526 19 6 5.4669 -3.9492 -2.0410 20 6 6.6564 -4.8952 -1.8501 21 6 7.1778 -4.7593 -0.4163 22 6 6.0383 -5.0537 0.5628 23 8 4.9529 -4.1591 0.3107 24 1 -0.4849 0.8400 0.0004 25 1 1.1792 -2.6703 2.1488 26 1 -0.2028 -1.7998 1.4323 27 1 1.5185 -5.5175 1.6068 28 1 0.3403 -6.3581 0.5646 29 1 2.2786 -5.6065 -0.7721 30 1 0.8135 -4.7227 -1.2573 31 1 2.8014 -3.3830 -2.1439 32 1 3.5864 -2.2776 -0.9906 33 1 5.0547 -4.0796 -3.0416 34 1 5.7972 -2.9184 -1.9136 35 1 6.3372 -5.9224 -2.0262 36 1 7.4470 -4.6334 -2.5534 37 1 7.9892 -5.4690 -0.2549 38 1 7.5438 -3.7451 -0.2564 39 1 5.7011 -6.0816 0.4295 40 1 6.3926 -4.9169 1.5846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260113701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:57 Heat of formation + Delta-G solvation = -62.566842 kcal Electronic energy + Delta-G solvation = -20116.530325 eV Core-core repulsion = 17249.410363 eV Total energy + Delta-G solvation = -2867.119962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47780 -38.79773 -35.08410 -34.41092 -33.25080 -32.03965 -30.32695 -27.40684 -26.85994 -24.80593 -24.04082 -22.70186 -21.29167 -21.03842 -18.63097 -17.57423 -17.11505 -16.79078 -16.68670 -16.19748 -15.68177 -15.38964 -15.27464 -14.83024 -14.61275 -14.41384 -14.06353 -13.98233 -13.43763 -13.14700 -12.96062 -12.83912 -12.77214 -12.68210 -12.32700 -12.22218 -12.18585 -11.93878 -11.74989 -11.53931 -11.24608 -10.76999 -10.63202 -10.34926 -10.16592 -8.98112 -8.56349 -8.17365 -6.30400 1.08532 1.41536 1.43454 1.51031 1.81169 2.39705 2.99138 3.10514 3.18726 3.90568 3.99221 4.01456 4.06354 4.15609 4.20708 4.33397 4.43511 4.49337 4.55482 4.58077 4.66243 4.74786 4.77391 4.82260 4.90209 4.95382 4.98813 5.06455 5.13148 5.17037 5.27179 5.34460 5.47650 5.53451 5.66113 5.99608 6.27576 6.55371 6.72798 6.85911 7.39233 8.88558 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.007842 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.429915 B = 3569.772760 C = 5049.028802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.018 3.982 3 Si 0.959 3.041 4 H -0.285 1.285 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.523 4.523 8 H 0.071 0.929 9 C 0.231 3.769 10 H -0.023 1.023 11 C -0.024 4.024 12 S -0.353 6.353 13 C -0.050 4.050 14 C 0.055 3.945 15 N -0.542 5.542 16 C 0.067 3.933 17 C 0.104 3.896 18 H 0.060 0.940 19 C -0.150 4.150 20 C -0.115 4.115 21 C -0.152 4.152 22 C 0.051 3.949 23 O -0.387 6.387 24 H 0.264 0.736 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.024 0.976 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.876 -11.660 -3.117 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.784 3.216 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.089 0.911 9 C 0.123 3.877 10 H -0.006 1.006 11 C -0.173 4.173 12 S -0.126 6.126 13 C -0.199 4.199 14 C -0.074 4.074 15 N -0.267 5.267 16 C -0.060 4.060 17 C 0.046 3.954 18 H 0.077 0.923 19 C -0.188 4.188 20 C -0.153 4.153 21 C -0.190 4.190 22 C -0.026 4.026 23 O -0.306 6.306 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.144 0.856 29 H 0.117 0.883 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.741 -11.663 -2.309 16.022 hybrid contribution 0.766 1.397 -0.960 1.860 sum 11.507 -10.265 -3.268 15.763 Atomic orbital electron populations 1.70033 1.07291 1.27772 1.50446 1.25745 0.95594 1.02520 0.94412 0.85594 0.78323 0.78711 0.78982 1.21015 1.19743 1.19299 1.21481 0.93445 0.90319 1.51045 0.91143 1.18994 0.89287 0.88819 0.90640 1.00557 1.23516 0.99062 0.92954 1.01760 1.86449 1.24283 1.09528 1.92345 1.23415 0.97485 0.98326 1.00626 1.22255 0.97247 0.92852 0.95086 1.61143 1.15128 1.02542 1.47876 1.22117 0.91075 1.00702 0.92151 1.22110 0.92131 0.97842 0.83287 0.92275 1.22177 0.96718 1.00570 0.99348 1.21560 0.97262 0.99532 0.96897 1.22174 0.98688 1.02692 0.95454 1.22718 0.86938 0.93199 0.99702 1.88110 1.49410 1.61193 1.31876 0.92661 0.92643 0.89187 0.89515 0.85649 0.88303 0.95812 0.94684 0.90134 0.90087 0.92301 0.90902 0.90242 0.88985 0.92246 0.92708 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.73 11.74 21.45 0.25 -52.48 16 2 C 0.02 0.96 5.32 84.65 0.45 1.41 16 3 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.52 -28.30 7.57 25.60 0.19 -28.11 16 8 H 0.07 3.80 5.74 -2.91 -0.02 3.78 16 9 C 0.23 11.80 1.78 44.34 0.08 11.88 16 10 H -0.02 -1.34 7.91 -2.39 -0.02 -1.36 16 11 C -0.02 -1.22 5.80 72.07 0.42 -0.80 16 12 S -0.35 -15.12 22.40 -56.49 -1.27 -16.39 16 13 C -0.05 -1.69 6.69 72.06 0.48 -1.21 16 14 C 0.06 1.94 5.27 86.46 0.46 2.39 16 15 N -0.54 -22.94 4.15 -876.51 -3.64 -26.58 16 16 C 0.07 2.58 4.36 86.30 0.38 2.95 16 17 C 0.10 3.13 2.62 30.63 0.08 3.21 16 18 H 0.06 1.61 6.41 -2.39 -0.02 1.59 16 19 C -0.15 -3.65 5.42 30.68 0.17 -3.48 16 20 C -0.12 -2.12 6.03 30.71 0.19 -1.94 16 21 C -0.15 -2.91 6.14 30.68 0.19 -2.73 16 22 C 0.05 1.20 6.84 72.01 0.49 1.69 16 23 O -0.39 -12.87 10.27 -148.98 -1.53 -14.40 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.05 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.09 5.07 6.50 -2.39 -0.02 5.06 16 27 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 29 H 0.10 2.84 6.09 -2.39 -0.01 2.83 16 30 H 0.02 0.90 7.91 -2.39 -0.02 0.88 16 31 H 0.04 1.31 8.08 -2.38 -0.02 1.29 16 32 H 0.08 3.56 5.05 -2.39 -0.01 3.55 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -62.27 314.81 0.42 -61.85 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.01 Total: 17.45 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 3.57 Total: -14.72 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -3.39 Total: -79.06 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.53 Total: -14.40 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -15.12 SS G_CDS: -1.27 Total: -16.39 kcal Total: -62.27 0.42 -61.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.719 kcal (2) G-P(sol) polarization free energy of solvation -62.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds