Wall clock time and date at job start Mon Mar 30 2020 05:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47417 * 269.99623 * 3 2 1 5 5 H 1.48501 * 109.47329 * 30.00027 * 3 2 1 6 6 H 1.48507 * 109.47126 * 149.99800 * 3 2 1 7 7 C 1.37881 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47012 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.18814 * 53.77317 * 10 9 7 12 12 C 1.52581 * 109.22857 * 294.38636 * 10 9 7 13 13 C 1.53094 * 109.87518 * 168.95255 * 12 10 9 14 14 S 1.81745 * 108.84247 * 63.07843 * 13 12 10 15 15 O 1.42097 * 109.46982 * 62.72408 * 14 13 12 16 16 C 1.81754 * 102.21898 * 306.73409 * 14 13 12 17 17 C 1.52628 * 109.15887 * 173.22303 * 10 9 7 18 18 H 1.08997 * 109.38172 * 70.98969 * 17 10 9 19 19 N 1.46902 * 109.39963 * 311.19036 * 17 10 9 20 20 C 1.48532 * 111.00304 * 181.79913 * 19 17 10 21 21 C 1.54931 * 103.22915 * 159.72010 * 20 19 17 22 22 C 1.54590 * 102.92418 * 322.58185 * 21 20 19 23 23 C 1.47911 * 111.00018 * 299.19397 * 19 17 10 24 24 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46870 * 60.00275 * 9 7 2 26 26 H 1.08995 * 109.47313 * 299.99683 * 9 7 2 27 27 H 1.09004 * 109.38743 * 48.85625 * 12 10 9 28 28 H 1.08993 * 109.39045 * 289.05292 * 12 10 9 29 29 H 1.09007 * 109.57871 * 182.88351 * 13 12 10 30 30 H 1.09005 * 109.57987 * 303.14210 * 13 12 10 31 31 H 1.09006 * 109.57596 * 173.07428 * 16 14 13 32 32 H 1.09003 * 109.57492 * 293.45789 * 16 14 13 33 33 H 1.09000 * 110.66306 * 278.15284 * 20 19 17 34 34 H 1.09000 * 110.66469 * 41.27760 * 20 19 17 35 35 H 1.09008 * 110.72236 * 204.22791 * 21 20 19 36 36 H 1.08996 * 110.87699 * 81.01543 * 21 20 19 37 37 H 1.08997 * 110.31298 * 263.04747 * 22 21 20 38 38 H 1.09000 * 110.31093 * 140.87567 * 22 21 20 39 39 H 1.08999 * 109.91316 * 333.50784 * 23 19 17 40 40 H 1.08993 * 109.91577 * 94.79928 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9405 -3.5391 0.8310 12 6 3.0239 -3.6575 -1.3116 13 6 4.2015 -4.6316 -1.2214 14 16 3.5549 -6.3145 -0.9915 15 8 2.7802 -6.6831 -2.1242 16 6 2.4646 -6.1142 0.4489 17 6 1.4826 -4.9732 0.1707 18 1 0.9261 -5.1889 -0.7414 19 7 0.5461 -4.8505 1.2958 20 6 -0.1856 -6.1234 1.5207 21 6 -0.6841 -5.9924 2.9818 22 6 0.4918 -5.2769 3.6855 23 6 1.2666 -4.5713 2.5571 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8903 27 1 3.3994 -2.6528 -1.5060 28 1 2.3646 -3.9611 -2.1247 29 1 4.7839 -4.5868 -2.1418 30 1 4.8341 -4.3627 -0.3755 31 1 1.9121 -7.0381 0.6200 32 1 3.0621 -5.8755 1.3288 33 1 -1.0271 -6.2099 0.8334 34 1 0.4855 -6.9761 1.4181 35 1 -0.8555 -6.9754 3.4205 36 1 -1.5889 -5.3867 3.0306 37 1 1.1315 -6.0035 4.1865 38 1 0.1161 -4.5456 4.4011 39 1 2.2811 -4.9657 2.5002 40 1 1.2926 -3.4971 2.7398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260137013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:54 Heat of formation + Delta-G solvation = -36.663238 kcal Electronic energy + Delta-G solvation = -20207.383905 eV Core-core repulsion = 17341.387207 eV Total energy + Delta-G solvation = -2865.996698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.45231 -36.14602 -35.38003 -32.77510 -31.94405 -29.44989 -28.52726 -28.33382 -25.33146 -22.95642 -22.17585 -20.85255 -20.32493 -18.60804 -17.68265 -16.28911 -16.08681 -15.62713 -14.91965 -14.61789 -14.43534 -14.01052 -13.72766 -13.64016 -13.18872 -12.53876 -12.41397 -12.30259 -12.08728 -11.89549 -11.62522 -11.19829 -11.07792 -10.99399 -10.90601 -10.86207 -10.68749 -10.43991 -10.26371 -10.18477 -9.66547 -9.58691 -9.20739 -8.87944 -8.32981 -8.22545 -7.59909 -5.91869 -3.93571 1.88223 2.74256 3.33354 3.40091 3.41824 4.00305 4.39468 4.49806 4.88898 4.93463 5.08612 5.11138 5.18715 5.30786 5.38048 5.43992 5.55052 5.64595 5.69142 5.82076 5.89170 5.98104 5.99694 6.02264 6.13180 6.29303 6.31515 6.34795 6.37160 6.55596 6.81958 6.93796 7.16829 7.36272 7.51700 7.82105 8.00791 8.18353 8.50490 9.14589 9.68623 11.18825 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.007550 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.161544 B = 3707.886806 C = 5082.947203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.052 0.948 9 C 0.037 3.963 10 C -0.084 4.084 11 H 0.063 0.937 12 C -0.104 4.104 13 C -0.435 4.435 14 S 1.226 4.774 15 O -0.857 6.857 16 C -0.479 4.479 17 C 0.091 3.909 18 H 0.078 0.922 19 N -0.488 5.488 20 C 0.026 3.974 21 C -0.121 4.121 22 C -0.130 4.130 23 C 0.033 3.967 24 H 0.258 0.742 25 H 0.010 0.990 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -14.754 5.855 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.000 4.000 10 C -0.103 4.103 11 H 0.081 0.919 12 C -0.143 4.143 13 C -0.573 4.573 14 S 1.424 4.576 15 O -0.852 6.852 16 C -0.617 4.617 17 C -0.019 4.019 18 H 0.096 0.904 19 N -0.211 5.211 20 C -0.102 4.102 21 C -0.159 4.159 22 C -0.168 4.168 23 C -0.095 4.095 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.272 -15.030 5.175 17.480 hybrid contribution -0.549 1.870 -0.210 1.960 sum 6.723 -13.160 4.965 15.589 Atomic orbital electron populations 1.69985 1.05920 1.26244 1.50863 1.24990 0.94746 0.98908 0.95691 0.86714 0.79866 0.84120 0.77971 1.20879 1.21331 1.20023 1.21292 0.92731 0.91291 1.50347 0.92956 1.19039 0.93171 0.89294 0.98457 1.21304 0.98069 0.94862 0.96063 0.91912 1.21450 0.94166 1.00363 0.98321 1.27639 1.05796 1.16330 1.07574 1.69793 1.05499 0.94036 0.88222 1.93105 1.72276 1.74302 1.45513 1.28375 1.11598 1.05683 1.16084 1.21886 0.91468 0.93520 0.95012 0.90418 1.64959 1.24271 1.28762 1.03089 1.23327 0.98119 0.91978 0.96763 1.22435 0.98765 0.99878 0.94857 1.22398 0.97099 0.99253 0.98080 1.22927 0.95808 1.01994 0.88739 0.93200 0.97209 0.93984 0.89507 0.92599 0.88156 0.86861 0.87623 0.86422 0.90657 0.93742 0.91780 0.90854 0.92147 0.91267 0.93578 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.42 8.23 -34.44 -0.28 -14.71 16 8 H 0.05 1.40 7.16 -52.49 -0.38 1.03 16 9 C 0.04 0.97 4.22 -27.88 -0.12 0.85 16 10 C -0.08 -1.68 1.08 -91.02 -0.10 -1.78 16 11 H 0.06 1.20 7.38 -51.93 -0.38 0.82 16 12 C -0.10 -1.98 4.99 -26.90 -0.13 -2.12 16 13 C -0.44 -5.85 6.43 37.21 0.24 -5.61 16 14 S 1.23 14.72 13.75 -107.50 -1.48 13.24 16 15 O -0.86 -16.06 18.14 -35.23 -0.64 -16.70 16 16 C -0.48 -6.16 5.06 37.20 0.19 -5.98 16 17 C 0.09 1.61 1.75 -67.86 -0.12 1.49 16 18 H 0.08 1.60 8.05 -51.93 -0.42 1.18 16 19 N -0.49 -8.60 4.09 -222.67 -0.91 -9.51 16 20 C 0.03 0.38 6.39 -1.90 -0.01 0.37 16 21 C -0.12 -1.54 7.06 -24.88 -0.18 -1.72 16 22 C -0.13 -1.66 6.93 -25.38 -0.18 -1.84 16 23 C 0.03 0.52 5.07 -2.75 -0.01 0.50 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 1.16 6.21 -51.93 -0.32 0.84 16 27 H 0.09 1.80 6.71 -51.93 -0.35 1.46 16 28 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 29 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.11 1.28 5.88 -51.92 -0.31 0.97 16 32 H 0.12 1.26 6.11 -51.93 -0.32 0.94 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.04 0.59 5.54 -51.93 -0.29 0.30 16 35 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.64 5.34 -51.93 -0.28 0.36 16 40 H 0.09 1.61 7.52 -51.93 -0.39 1.22 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -35.77 310.19 -9.80 -45.57 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.36 Total: 1.37 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -0.80 Total: -28.96 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.17 Total: -35.97 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.64 Total: -16.70 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 14.72 SS G_CDS: -1.48 Total: 13.24 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.77 -9.80 -45.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.906 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds