Wall clock time and date at job start Mon Mar 30 2020 05:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47417 * 269.99623 * 3 2 1 5 5 H 1.48501 * 109.47329 * 30.00027 * 3 2 1 6 6 H 1.48507 * 109.47126 * 149.99800 * 3 2 1 7 7 C 1.37881 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47012 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.18814 * 53.77317 * 10 9 7 12 12 C 1.52581 * 109.22857 * 294.38636 * 10 9 7 13 13 C 1.53094 * 109.87518 * 168.95255 * 12 10 9 14 14 S 1.81745 * 108.84247 * 63.07843 * 13 12 10 15 15 O 1.42097 * 109.46982 * 62.72408 * 14 13 12 16 16 C 1.81754 * 102.21898 * 306.73409 * 14 13 12 17 17 C 1.52628 * 109.15887 * 173.22303 * 10 9 7 18 18 H 1.08997 * 109.38172 * 70.98969 * 17 10 9 19 19 N 1.46902 * 109.39963 * 311.19036 * 17 10 9 20 20 C 1.48532 * 111.00304 * 181.79913 * 19 17 10 21 21 C 1.54931 * 103.22915 * 159.72010 * 20 19 17 22 22 C 1.54590 * 102.92418 * 322.58185 * 21 20 19 23 23 C 1.47911 * 111.00018 * 299.19397 * 19 17 10 24 24 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46870 * 60.00275 * 9 7 2 26 26 H 1.08995 * 109.47313 * 299.99683 * 9 7 2 27 27 H 1.09004 * 109.38743 * 48.85625 * 12 10 9 28 28 H 1.08993 * 109.39045 * 289.05292 * 12 10 9 29 29 H 1.09007 * 109.57871 * 182.88351 * 13 12 10 30 30 H 1.09005 * 109.57987 * 303.14210 * 13 12 10 31 31 H 1.09006 * 109.57596 * 173.07428 * 16 14 13 32 32 H 1.09003 * 109.57492 * 293.45789 * 16 14 13 33 33 H 1.09000 * 110.66306 * 278.15284 * 20 19 17 34 34 H 1.09000 * 110.66469 * 41.27760 * 20 19 17 35 35 H 1.09008 * 110.72236 * 204.22791 * 21 20 19 36 36 H 1.08996 * 110.87699 * 81.01543 * 21 20 19 37 37 H 1.08997 * 110.31298 * 263.04747 * 22 21 20 38 38 H 1.09000 * 110.31093 * 140.87567 * 22 21 20 39 39 H 1.08999 * 109.91316 * 333.50784 * 23 19 17 40 40 H 1.08993 * 109.91577 * 94.79928 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9405 -3.5391 0.8310 12 6 3.0239 -3.6575 -1.3116 13 6 4.2015 -4.6316 -1.2214 14 16 3.5549 -6.3145 -0.9915 15 8 2.7802 -6.6831 -2.1242 16 6 2.4646 -6.1142 0.4489 17 6 1.4826 -4.9732 0.1707 18 1 0.9261 -5.1889 -0.7414 19 7 0.5461 -4.8505 1.2958 20 6 -0.1856 -6.1234 1.5207 21 6 -0.6841 -5.9924 2.9818 22 6 0.4918 -5.2769 3.6855 23 6 1.2666 -4.5713 2.5571 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8903 27 1 3.3994 -2.6528 -1.5060 28 1 2.3646 -3.9611 -2.1247 29 1 4.7839 -4.5868 -2.1418 30 1 4.8341 -4.3627 -0.3755 31 1 1.9121 -7.0381 0.6200 32 1 3.0621 -5.8755 1.3288 33 1 -1.0271 -6.2099 0.8334 34 1 0.4855 -6.9761 1.4181 35 1 -0.8555 -6.9754 3.4205 36 1 -1.5889 -5.3867 3.0306 37 1 1.1315 -6.0035 4.1865 38 1 0.1161 -4.5456 4.4011 39 1 2.2811 -4.9657 2.5002 40 1 1.2926 -3.4971 2.7398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260137013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:53 Heat of formation + Delta-G solvation = -63.409017 kcal Electronic energy + Delta-G solvation = -20208.543689 eV Core-core repulsion = 17341.387207 eV Total energy + Delta-G solvation = -2867.156482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77856 -37.59729 -36.72258 -34.84127 -33.24220 -31.20215 -29.73078 -29.51857 -27.16296 -24.25917 -23.96273 -22.17581 -21.62460 -20.08167 -18.89101 -18.31513 -17.35194 -16.89002 -16.52022 -16.07783 -15.67751 -15.31701 -15.24571 -14.92398 -14.50875 -14.10958 -14.01091 -13.79553 -13.48692 -13.22854 -13.02901 -12.87273 -12.72267 -12.41659 -12.34139 -12.29984 -12.13717 -11.92483 -11.83430 -11.48344 -11.28093 -11.13759 -11.03991 -10.71297 -10.50838 -9.49779 -8.83358 -8.15575 -6.25609 0.84439 1.36635 1.38119 1.48661 1.69046 2.40220 2.91611 3.15054 3.17210 3.62245 3.79498 3.88621 3.97236 3.98416 4.11821 4.17503 4.25440 4.39648 4.48440 4.59957 4.67419 4.76452 4.82590 4.87804 4.91602 5.02511 5.11848 5.16226 5.21081 5.22898 5.30783 5.39715 5.42238 5.60627 5.83294 5.98109 6.14760 6.21740 6.29805 6.93788 7.41966 8.96166 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.007550 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.161544 B = 3707.886806 C = 5082.947203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.048 3.952 10 C -0.074 4.074 11 H 0.082 0.918 12 C -0.106 4.106 13 C -0.436 4.436 14 S 1.317 4.683 15 O -0.924 6.924 16 C -0.476 4.476 17 C 0.095 3.905 18 H 0.034 0.966 19 N -0.530 5.530 20 C 0.024 3.976 21 C -0.116 4.116 22 C -0.123 4.123 23 C 0.032 3.968 24 H 0.259 0.741 25 H -0.044 1.044 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.020 0.980 29 H 0.115 0.885 30 H 0.153 0.847 31 H 0.123 0.877 32 H 0.155 0.845 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.677 -16.278 7.837 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.785 3.215 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.011 3.989 10 C -0.093 4.093 11 H 0.100 0.900 12 C -0.144 4.144 13 C -0.573 4.573 14 S 1.516 4.484 15 O -0.919 6.919 16 C -0.614 4.614 17 C -0.015 4.015 18 H 0.052 0.948 19 N -0.253 5.253 20 C -0.103 4.103 21 C -0.154 4.154 22 C -0.161 4.161 23 C -0.095 4.095 24 H 0.067 0.933 25 H -0.026 1.026 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.133 0.867 30 H 0.171 0.829 31 H 0.141 0.859 32 H 0.173 0.827 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.354 -16.568 7.156 20.807 hybrid contribution -1.591 2.376 -0.844 2.982 sum 8.763 -14.192 6.313 17.834 Atomic orbital electron populations 1.70160 1.07964 1.27229 1.52307 1.25985 0.95616 1.03275 0.95317 0.85531 0.78995 0.78878 0.78145 1.20487 1.21117 1.17983 1.21728 0.93424 0.92141 1.49335 0.91729 1.18819 0.93586 0.91911 0.94549 1.21135 0.97064 0.93839 0.97223 0.89992 1.21347 0.95782 1.00830 0.96489 1.27735 1.04087 1.15144 1.10353 1.69043 1.02705 0.91306 0.85382 1.92976 1.73868 1.76047 1.49054 1.28396 1.10952 1.04095 1.17953 1.21603 0.92058 0.94023 0.93838 0.94767 1.64801 1.25363 1.31218 1.03924 1.23388 0.97761 0.91441 0.97745 1.22429 0.97996 1.01369 0.93591 1.22390 0.97141 0.99638 0.96925 1.22905 0.97615 1.00140 0.88855 0.93262 1.02564 0.96570 0.91807 0.96106 0.86657 0.82883 0.85911 0.82722 0.92514 0.91312 0.88433 0.92668 0.88625 0.91658 0.90941 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.78 13.29 21.45 0.28 -59.50 16 2 C -0.01 -0.30 5.46 84.66 0.46 0.17 16 3 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.53 -30.30 8.23 25.60 0.21 -30.09 16 8 H 0.06 3.47 7.16 -2.91 -0.02 3.45 16 9 C 0.05 2.67 4.22 29.85 0.13 2.79 16 10 C -0.07 -3.00 1.08 -11.06 -0.01 -3.01 16 11 H 0.08 3.00 7.38 -2.39 -0.02 2.99 16 12 C -0.11 -4.08 4.99 30.49 0.15 -3.93 16 13 C -0.44 -10.51 6.43 72.01 0.46 -10.05 16 14 S 1.32 27.98 13.75 -56.49 -0.78 27.20 16 15 O -0.92 -34.02 18.14 -148.98 -2.70 -36.72 16 16 C -0.48 -10.75 5.06 72.01 0.36 -10.38 16 17 C 0.09 3.39 1.75 44.82 0.08 3.47 16 18 H 0.03 1.50 8.05 -2.39 -0.02 1.48 16 19 N -0.53 -18.93 4.09 -858.40 -3.51 -22.44 16 20 C 0.02 0.68 6.39 86.65 0.55 1.24 16 21 C -0.12 -2.73 7.06 31.80 0.22 -2.50 16 22 C -0.12 -2.82 6.93 31.47 0.22 -2.60 16 23 C 0.03 0.97 5.07 86.45 0.44 1.41 16 24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 25 H -0.04 -2.85 8.14 -2.38 -0.02 -2.87 16 26 H 0.02 0.95 6.21 -2.39 -0.01 0.94 16 27 H 0.06 2.71 6.71 -2.39 -0.02 2.69 16 28 H 0.02 0.91 8.05 -2.39 -0.02 0.89 16 29 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.15 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.12 2.47 5.88 -2.38 -0.01 2.46 16 32 H 0.16 2.42 6.11 -2.39 -0.01 2.41 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.61 5.54 -2.39 -0.01 1.59 16 35 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.73 5.34 -2.39 -0.01 1.72 16 40 H 0.05 1.78 7.52 -2.39 -0.02 1.77 16 Total: -1.00 -85.21 310.19 -0.38 -85.59 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.01 Total: 11.98 kcal Atomic # 6 Polarization: -56.77 SS G_CDS: 3.28 Total: -53.49 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -3.22 Total: -81.94 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -2.70 Total: -36.72 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 27.98 SS G_CDS: -0.78 Total: 27.20 kcal Total: -85.21 -0.38 -85.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.179 kcal (2) G-P(sol) polarization free energy of solvation -85.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds