Wall clock time and date at job start Mon Mar 30 2020 05:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48508 * 109.47068 * 239.99616 * 3 2 1 5 5 H 1.48497 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 120.00056 * 3 2 1 7 7 C 1.37878 * 119.99547 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00290 * 359.73234 * 7 2 1 10 10 C 1.53005 * 109.47227 * 179.97438 * 9 7 2 11 11 H 1.08988 * 109.22440 * 54.66879 * 10 9 7 12 12 C 1.52583 * 109.22214 * 295.26604 * 10 9 7 13 13 C 1.53097 * 109.95847 * 310.35501 * 12 10 9 14 14 S 1.81750 * 108.84202 * 296.97654 * 13 12 10 15 15 O 1.42101 * 109.47253 * 169.25852 * 14 13 12 16 16 C 1.81756 * 102.21834 * 53.26491 * 14 13 12 17 17 C 1.52583 * 109.22224 * 174.03455 * 10 9 7 18 18 H 1.09004 * 109.38630 * 169.79414 * 17 10 9 19 19 N 1.46902 * 109.38746 * 289.49150 * 17 10 9 20 20 C 1.48534 * 110.99830 * 178.85349 * 19 17 10 21 21 C 1.54940 * 103.22659 * 159.72500 * 20 19 17 22 22 C 1.54600 * 102.91652 * 322.58015 * 21 20 19 23 23 C 1.47906 * 110.99847 * 296.24481 * 19 17 10 24 24 H 0.97001 * 119.99788 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46829 * 299.99687 * 9 7 2 26 26 H 1.09004 * 109.47304 * 59.99229 * 9 7 2 27 27 H 1.08993 * 109.39054 * 70.50384 * 12 10 9 28 28 H 1.09005 * 109.38653 * 190.30948 * 12 10 9 29 29 H 1.08997 * 109.57932 * 56.78127 * 13 12 10 30 30 H 1.08995 * 109.57658 * 177.16971 * 13 12 10 31 31 H 1.09000 * 109.57485 * 66.54754 * 16 14 13 32 32 H 1.09002 * 109.57033 * 186.79595 * 16 14 13 33 33 H 1.09003 * 110.66385 * 278.15279 * 20 19 17 34 34 H 1.08993 * 110.66961 * 41.28660 * 20 19 17 35 35 H 1.09000 * 110.71892 * 204.23032 * 21 20 19 36 36 H 1.08997 * 110.87997 * 81.00772 * 21 20 19 37 37 H 1.09003 * 110.30929 * 263.04296 * 22 21 20 38 38 H 1.09002 * 110.38886 * 140.92667 * 22 21 20 39 39 H 1.08993 * 109.91897 * 333.51269 * 23 19 17 40 40 H 1.09005 * 109.91316 * 94.80979 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0072 10 6 2.2452 -3.6622 0.0058 11 1 2.9344 -3.5461 0.8420 12 6 3.0332 -3.6478 -1.3007 13 6 2.0738 -3.5353 -2.4885 14 16 1.0090 -5.0077 -2.5245 15 8 -0.0431 -4.8087 -3.4586 16 6 0.3271 -5.0305 -0.8398 17 6 1.4830 -4.9747 0.1623 18 1 2.1598 -5.8099 -0.0189 19 7 0.9497 -5.0692 1.5278 20 6 0.1762 -6.3238 1.7115 21 6 0.1593 -6.5078 3.2499 22 6 1.5678 -6.0290 3.6707 23 6 2.0438 -5.1209 2.5217 24 1 -0.4850 0.8401 -0.0004 25 1 0.6279 -2.5544 0.9000 26 1 0.6206 -2.5593 -0.8800 27 1 3.7138 -2.7964 -1.3034 28 1 3.6073 -4.5704 -1.3872 29 1 1.4586 -2.6424 -2.3778 30 1 2.6450 -3.4749 -3.4148 31 1 -0.3222 -4.1668 -0.6970 32 1 -0.2450 -5.9462 -0.6899 33 1 -0.8373 -6.2107 1.3265 34 1 0.6808 -7.1610 1.2294 35 1 0.0143 -7.5561 3.5113 36 1 -0.6115 -5.8874 3.7069 37 1 2.2390 -6.8804 3.7829 38 1 1.5146 -5.4647 4.6018 39 1 2.9408 -5.5391 2.0651 40 1 2.2490 -4.1196 2.9005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260137019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:56 Heat of formation + Delta-G solvation = -39.065895 kcal Electronic energy + Delta-G solvation = -20184.211603 eV Core-core repulsion = 17318.110718 eV Total energy + Delta-G solvation = -2866.100885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.30658 -36.55952 -35.13825 -32.70744 -31.87080 -29.15461 -28.67598 -27.90418 -25.69462 -23.02503 -22.63222 -20.75352 -20.50771 -18.25018 -16.86142 -16.44058 -16.02418 -15.70149 -14.70992 -14.55016 -14.47419 -14.06968 -13.78262 -13.51618 -13.34568 -12.80564 -12.52754 -12.11890 -12.01919 -11.77722 -11.44756 -11.18800 -11.17795 -11.07061 -10.90389 -10.79316 -10.60112 -10.43668 -10.36738 -10.21508 -9.69120 -9.40986 -9.11271 -8.86493 -8.30847 -7.95180 -7.79339 -5.96069 -3.97937 2.10737 2.97639 3.32813 3.38432 3.39338 4.18689 4.37700 4.47267 4.82604 4.85690 5.08048 5.30252 5.31901 5.39670 5.43215 5.53620 5.63352 5.65161 5.69487 5.81569 5.87315 5.90384 5.93973 6.10329 6.20069 6.27090 6.31464 6.36420 6.46187 6.63112 6.74789 6.80294 7.15629 7.26304 7.48768 7.71995 7.90254 8.08339 8.45983 9.09163 9.65257 11.14778 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.007961 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.697988 B = 3516.161034 C = 4807.335042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.032 3.968 10 C -0.095 4.095 11 H 0.071 0.929 12 C -0.075 4.075 13 C -0.429 4.429 14 S 1.210 4.790 15 O -0.870 6.870 16 C -0.430 4.430 17 C 0.113 3.887 18 H 0.042 0.958 19 N -0.499 5.499 20 C 0.033 3.967 21 C -0.123 4.123 22 C -0.130 4.130 23 C 0.038 3.962 24 H 0.260 0.740 25 H 0.032 0.968 26 H 0.011 0.989 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.334 -15.816 2.895 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.005 4.005 10 C -0.114 4.114 11 H 0.090 0.910 12 C -0.113 4.113 13 C -0.568 4.568 14 S 1.410 4.590 15 O -0.865 6.865 16 C -0.567 4.567 17 C 0.004 3.996 18 H 0.060 0.940 19 N -0.224 5.224 20 C -0.095 4.095 21 C -0.161 4.161 22 C -0.169 4.169 23 C -0.090 4.090 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.647 -15.861 2.175 16.976 hybrid contribution -0.285 2.339 0.356 2.383 sum 5.362 -13.522 2.531 14.765 Atomic orbital electron populations 1.69958 1.05990 1.26530 1.50789 1.25005 0.94747 0.99045 0.95620 0.86755 0.79637 0.83696 0.78468 1.20407 1.21438 1.20320 1.21219 0.92790 0.91101 1.50383 0.92838 1.19209 0.93401 0.90240 0.97624 1.21319 0.98359 0.94812 0.96870 0.91047 1.20996 0.96772 1.01456 0.92125 1.27524 1.09263 1.16566 1.03439 1.69678 0.98597 1.07117 0.83650 1.93072 1.56810 1.84452 1.52144 1.27705 1.06579 1.07794 1.14660 1.21411 0.92901 0.98046 0.87278 0.94005 1.64760 1.20545 1.33895 1.03185 1.23221 0.99370 0.91216 0.95675 1.22458 0.97491 1.00500 0.95676 1.22403 0.96599 0.98950 0.98920 1.22841 0.93121 1.00468 0.92573 0.93067 0.94979 0.97083 0.90378 0.92763 0.86678 0.88203 0.87079 0.88163 0.90361 0.94077 0.91640 0.90882 0.91992 0.91291 0.93921 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.05 8.47 -34.44 -0.29 -14.34 16 8 H 0.05 1.40 7.07 -52.48 -0.37 1.03 16 9 C 0.03 0.78 3.07 -27.88 -0.09 0.70 16 10 C -0.09 -1.73 2.00 -91.04 -0.18 -1.91 16 11 H 0.07 1.32 6.84 -51.94 -0.36 0.96 16 12 C -0.07 -1.19 5.02 -26.89 -0.14 -1.32 16 13 C -0.43 -7.33 5.98 37.21 0.22 -7.11 16 14 S 1.21 18.45 13.75 -107.50 -1.48 16.97 16 15 O -0.87 -18.99 18.14 -35.23 -0.64 -19.63 16 16 C -0.43 -6.98 5.15 37.20 0.19 -6.79 16 17 C 0.11 1.73 1.20 -67.88 -0.08 1.65 16 18 H 0.04 0.51 7.88 -51.93 -0.41 0.10 16 19 N -0.50 -7.81 4.68 -222.70 -1.04 -8.85 16 20 C 0.03 0.42 5.34 -1.90 -0.01 0.41 16 21 C -0.12 -1.38 7.06 -24.87 -0.18 -1.56 16 22 C -0.13 -1.46 6.93 -25.37 -0.18 -1.63 16 23 C 0.04 0.52 5.39 -2.75 -0.01 0.51 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.03 0.88 7.77 -51.93 -0.40 0.48 16 26 H 0.01 0.30 4.51 -51.93 -0.23 0.06 16 27 H 0.08 1.36 7.25 -51.93 -0.38 0.98 16 28 H 0.05 0.62 8.06 -51.93 -0.42 0.21 16 29 H 0.11 2.55 6.00 -51.93 -0.31 2.24 16 30 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.11 2.30 6.27 -51.93 -0.33 1.98 16 32 H 0.10 1.40 6.75 -51.93 -0.35 1.05 16 33 H 0.08 1.04 7.58 -51.93 -0.39 0.65 16 34 H 0.04 0.46 8.01 -51.93 -0.42 0.04 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.53 7.66 -51.93 -0.40 0.13 16 40 H 0.08 1.29 7.98 -51.93 -0.41 0.87 16 LS Contribution 310.43 15.07 4.68 4.68 Total: -1.00 -35.55 310.43 -10.03 -45.58 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.43 Total: 0.84 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: -0.84 Total: -29.86 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.31 Total: -35.37 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.64 Total: -19.63 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 18.45 SS G_CDS: -1.48 Total: 16.97 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.55 -10.03 -45.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.514 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds