Wall clock time and date at job start Mon Mar 30 2020 05:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48508 * 109.47068 * 239.99616 * 3 2 1 5 5 H 1.48497 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 120.00056 * 3 2 1 7 7 C 1.37878 * 119.99547 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00290 * 359.73234 * 7 2 1 10 10 C 1.53005 * 109.47227 * 179.97438 * 9 7 2 11 11 H 1.08988 * 109.22440 * 54.66879 * 10 9 7 12 12 C 1.52583 * 109.22214 * 295.26604 * 10 9 7 13 13 C 1.53097 * 109.95847 * 310.35501 * 12 10 9 14 14 S 1.81750 * 108.84202 * 296.97654 * 13 12 10 15 15 O 1.42101 * 109.47253 * 169.25852 * 14 13 12 16 16 C 1.81756 * 102.21834 * 53.26491 * 14 13 12 17 17 C 1.52583 * 109.22224 * 174.03455 * 10 9 7 18 18 H 1.09004 * 109.38630 * 169.79414 * 17 10 9 19 19 N 1.46902 * 109.38746 * 289.49150 * 17 10 9 20 20 C 1.48534 * 110.99830 * 178.85349 * 19 17 10 21 21 C 1.54940 * 103.22659 * 159.72500 * 20 19 17 22 22 C 1.54600 * 102.91652 * 322.58015 * 21 20 19 23 23 C 1.47906 * 110.99847 * 296.24481 * 19 17 10 24 24 H 0.97001 * 119.99788 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46829 * 299.99687 * 9 7 2 26 26 H 1.09004 * 109.47304 * 59.99229 * 9 7 2 27 27 H 1.08993 * 109.39054 * 70.50384 * 12 10 9 28 28 H 1.09005 * 109.38653 * 190.30948 * 12 10 9 29 29 H 1.08997 * 109.57932 * 56.78127 * 13 12 10 30 30 H 1.08995 * 109.57658 * 177.16971 * 13 12 10 31 31 H 1.09000 * 109.57485 * 66.54754 * 16 14 13 32 32 H 1.09002 * 109.57033 * 186.79595 * 16 14 13 33 33 H 1.09003 * 110.66385 * 278.15279 * 20 19 17 34 34 H 1.08993 * 110.66961 * 41.28660 * 20 19 17 35 35 H 1.09000 * 110.71892 * 204.23032 * 21 20 19 36 36 H 1.08997 * 110.87997 * 81.00772 * 21 20 19 37 37 H 1.09003 * 110.30929 * 263.04296 * 22 21 20 38 38 H 1.09002 * 110.38886 * 140.92667 * 22 21 20 39 39 H 1.08993 * 109.91897 * 333.51269 * 23 19 17 40 40 H 1.09005 * 109.91316 * 94.80979 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0072 10 6 2.2452 -3.6622 0.0058 11 1 2.9344 -3.5461 0.8420 12 6 3.0332 -3.6478 -1.3007 13 6 2.0738 -3.5353 -2.4885 14 16 1.0090 -5.0077 -2.5245 15 8 -0.0431 -4.8087 -3.4586 16 6 0.3271 -5.0305 -0.8398 17 6 1.4830 -4.9747 0.1623 18 1 2.1598 -5.8099 -0.0189 19 7 0.9497 -5.0692 1.5278 20 6 0.1762 -6.3238 1.7115 21 6 0.1593 -6.5078 3.2499 22 6 1.5678 -6.0290 3.6707 23 6 2.0438 -5.1209 2.5217 24 1 -0.4850 0.8401 -0.0004 25 1 0.6279 -2.5544 0.9000 26 1 0.6206 -2.5593 -0.8800 27 1 3.7138 -2.7964 -1.3034 28 1 3.6073 -4.5704 -1.3872 29 1 1.4586 -2.6424 -2.3778 30 1 2.6450 -3.4749 -3.4148 31 1 -0.3222 -4.1668 -0.6970 32 1 -0.2450 -5.9462 -0.6899 33 1 -0.8373 -6.2107 1.3265 34 1 0.6808 -7.1610 1.2294 35 1 0.0143 -7.5561 3.5113 36 1 -0.6115 -5.8874 3.7069 37 1 2.2390 -6.8804 3.7829 38 1 1.5146 -5.4647 4.6018 39 1 2.9408 -5.5391 2.0651 40 1 2.2490 -4.1196 2.9005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260137019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:56 Heat of formation + Delta-G solvation = -66.121732 kcal Electronic energy + Delta-G solvation = -20185.384832 eV Core-core repulsion = 17318.110718 eV Total energy + Delta-G solvation = -2867.274114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.49850 -37.87813 -36.76046 -34.70623 -33.17207 -30.42662 -30.12060 -29.22234 -27.29954 -24.89218 -23.88937 -21.86387 -21.51159 -19.66062 -18.58716 -18.04368 -17.39865 -16.78444 -16.50377 -16.06813 -15.91350 -15.43419 -15.21219 -14.84385 -14.49006 -14.24401 -14.10592 -13.53244 -13.34808 -13.14792 -12.95338 -12.86200 -12.72077 -12.43012 -12.32317 -12.12015 -12.09586 -11.83623 -11.75628 -11.34357 -11.29593 -11.09572 -10.81966 -10.57958 -10.48596 -9.25779 -9.01844 -8.17496 -6.25848 0.81332 1.33598 1.36303 1.43440 1.65307 2.38489 2.84382 3.16383 3.28464 3.78607 3.86115 3.96313 4.10424 4.17218 4.22422 4.33821 4.46127 4.51348 4.57780 4.72667 4.80509 4.85022 4.98744 5.01339 5.03553 5.09450 5.17185 5.18736 5.20727 5.31337 5.44014 5.46803 5.54155 5.68210 5.88219 5.97900 6.22211 6.32958 6.40026 6.95537 7.42258 8.93863 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.007961 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.697988 B = 3516.161034 C = 4807.335042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.009 4.009 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.065 0.935 9 C 0.044 3.956 10 C -0.090 4.090 11 H 0.073 0.927 12 C -0.073 4.073 13 C -0.438 4.438 14 S 1.306 4.694 15 O -0.935 6.935 16 C -0.432 4.432 17 C 0.117 3.883 18 H 0.098 0.902 19 N -0.541 5.541 20 C 0.032 3.968 21 C -0.121 4.121 22 C -0.124 4.124 23 C 0.037 3.963 24 H 0.256 0.744 25 H -0.014 1.014 26 H -0.018 1.018 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.055 0.945 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 -18.503 3.059 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.205 4.205 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.007 3.993 10 C -0.109 4.109 11 H 0.091 0.909 12 C -0.111 4.111 13 C -0.576 4.576 14 S 1.507 4.493 15 O -0.931 6.931 16 C -0.570 4.570 17 C 0.008 3.992 18 H 0.116 0.884 19 N -0.267 5.267 20 C -0.096 4.096 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.091 4.091 24 H 0.065 0.935 25 H 0.005 0.995 26 H 0.000 1.000 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.622 -18.554 2.344 20.593 hybrid contribution -1.242 3.179 0.353 3.431 sum 7.380 -15.375 2.697 17.266 Atomic orbital electron populations 1.70142 1.07987 1.27104 1.53026 1.25969 0.95522 1.03277 0.95716 0.85661 0.78300 0.78860 0.79223 1.19201 1.21830 1.18873 1.21771 0.93521 0.92329 1.48259 0.91694 1.18990 0.93842 0.92467 0.94001 1.21234 0.97181 0.93916 0.98580 0.90867 1.21071 0.96134 1.04247 0.89693 1.27613 1.09670 1.14624 1.05707 1.68717 0.95491 1.04125 0.80992 1.92931 1.59345 1.85338 1.55459 1.27758 1.06759 1.06603 1.15856 1.21402 0.92749 0.97899 0.87175 0.88438 1.64622 1.22033 1.36417 1.03583 1.23277 0.98478 0.90855 0.96950 1.22457 0.97026 1.01859 0.94512 1.22385 0.96925 0.99302 0.97603 1.22823 0.93602 0.99516 0.93177 0.93508 0.99512 0.99998 0.91852 0.86150 0.92630 0.85452 0.92608 0.85517 0.91919 0.91011 0.88749 0.92870 0.89105 0.91744 0.91616 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.73 13.29 21.45 0.28 -60.45 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.95 45.87 29.54 68.60 2.03 47.90 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.52 -29.24 8.47 25.60 0.22 -29.02 16 8 H 0.06 3.41 7.07 -2.91 -0.02 3.39 16 9 C 0.04 2.26 3.07 29.85 0.09 2.35 16 10 C -0.09 -3.22 2.00 -11.07 -0.02 -3.24 16 11 H 0.07 2.59 6.84 -2.39 -0.02 2.58 16 12 C -0.07 -2.12 5.02 30.49 0.15 -1.97 16 13 C -0.44 -14.57 5.98 72.01 0.43 -14.14 16 14 S 1.31 37.90 13.75 -56.49 -0.78 37.12 16 15 O -0.94 -41.03 18.14 -148.98 -2.70 -43.73 16 16 C -0.43 -13.80 5.15 72.01 0.37 -13.43 16 17 C 0.12 3.32 1.20 44.81 0.05 3.38 16 18 H 0.10 1.78 7.88 -2.38 -0.02 1.76 16 19 N -0.54 -16.36 4.68 -858.48 -4.02 -20.38 16 20 C 0.03 0.73 5.34 86.65 0.46 1.20 16 21 C -0.12 -2.43 7.06 31.80 0.22 -2.21 16 22 C -0.12 -2.44 6.93 31.47 0.22 -2.23 16 23 C 0.04 0.94 5.39 86.44 0.47 1.40 16 24 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 25 H -0.01 -0.81 7.77 -2.38 -0.02 -0.83 16 26 H -0.02 -1.04 4.51 -2.38 -0.01 -1.05 16 27 H 0.06 2.06 7.25 -2.39 -0.02 2.04 16 28 H 0.12 2.01 8.06 -2.38 -0.02 1.99 16 29 H 0.05 2.57 6.00 -2.39 -0.01 2.55 16 30 H 0.13 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.05 2.46 6.27 -2.39 -0.01 2.44 16 32 H 0.13 3.32 6.75 -2.39 -0.02 3.30 16 33 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 34 H 0.07 1.24 8.01 -2.39 -0.02 1.22 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 40 H 0.05 1.56 7.98 -2.38 -0.02 1.54 16 Total: -1.00 -85.16 310.43 -1.05 -86.21 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.01 Total: 11.28 kcal Atomic # 6 Polarization: -61.08 SS G_CDS: 3.13 Total: -57.95 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -3.74 Total: -80.83 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -2.70 Total: -43.73 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 37.90 SS G_CDS: -0.78 Total: 37.12 kcal Total: -85.16 -1.05 -86.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.090 kcal (2) G-P(sol) polarization free energy of solvation -85.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds