Wall clock time and date at job start Mon Mar 30 2020 05:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46853 * 110.98940 * 2 1 4 4 C 1.52601 * 109.00043 * 188.15604 * 3 2 1 5 5 C 1.52599 * 111.75421 * 301.30578 * 4 3 2 6 6 C 1.52707 * 111.15583 * 49.14339 * 5 4 3 7 7 C 1.46661 * 111.10553 * 123.67541 * 2 1 3 8 8 C 1.55459 * 106.02756 * 163.70412 * 5 4 3 9 9 S 1.81581 * 107.89173 * 55.00270 * 8 5 4 10 10 O 1.42101 * 109.56132 * 172.35709 * 9 8 5 11 11 C 1.81701 * 102.19630 * 56.31223 * 9 8 5 12 12 C 1.52910 * 109.13415 * 307.25807 * 11 9 8 13 13 C 1.51442 * 113.25088 * 280.69739 * 5 4 3 14 14 H 1.10535 * 107.81823 * 198.24310 * 13 5 4 15 15 C 1.50105 * 113.02795 * 79.70651 * 13 5 4 16 16 H 1.07998 * 120.00271 * 294.83083 * 15 13 5 17 17 C 1.37873 * 120.00088 * 114.83324 * 15 13 5 18 18 N 1.31516 * 120.00075 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00288 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46583 * 59.99968 * 19 17 15 21 21 H 1.48500 * 109.47566 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47083 * 300.00321 * 19 17 15 23 23 H 1.08999 * 109.47144 * 296.31990 * 1 2 3 24 24 H 1.09000 * 109.47579 * 56.32369 * 1 2 3 25 25 H 1.09000 * 109.47033 * 176.32268 * 1 2 3 26 26 H 1.09472 * 108.80430 * 307.05663 * 3 2 1 27 27 H 1.08483 * 110.23108 * 66.27448 * 3 2 1 28 28 H 1.08945 * 109.71435 * 178.37952 * 4 3 2 29 29 H 1.09915 * 108.55608 * 61.12727 * 4 3 2 30 30 H 1.09697 * 108.96022 * 192.63626 * 6 5 4 31 31 H 1.09850 * 108.67354 * 76.17753 * 6 5 4 32 32 H 1.08293 * 110.41429 * 300.86774 * 7 2 1 33 33 H 1.10308 * 107.75231 * 57.51592 * 7 2 1 34 34 H 1.08499 * 108.63752 * 174.48904 * 8 5 4 35 35 H 1.08489 * 108.66532 * 295.48923 * 8 5 4 36 36 H 1.09076 * 109.50686 * 187.31192 * 11 9 8 37 37 H 1.09043 * 109.54650 * 67.34405 * 11 9 8 38 38 H 1.08575 * 110.21288 * 297.29705 * 12 11 9 39 39 H 1.09590 * 108.72633 * 178.61525 * 12 11 9 40 40 H 0.96996 * 120.00186 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3711 0.0000 4 6 3.5065 1.3234 -0.2047 5 6 4.1992 0.5090 0.8841 6 6 3.5158 -0.8424 1.0806 7 6 1.9971 -0.7587 1.1386 8 6 5.6213 0.1905 0.3427 9 16 6.4129 1.7623 -0.1044 10 8 7.7750 1.5314 -0.4369 11 6 6.3184 2.6960 1.4515 12 6 4.8716 2.7002 1.9464 13 6 4.3802 1.2737 2.1787 14 1 5.1559 0.7557 2.7719 15 6 3.1332 1.3191 3.0131 16 1 2.2599 1.8413 2.6511 17 6 3.1027 0.6943 4.2417 18 7 4.1663 0.0589 4.6829 19 14 1.5512 0.7514 5.2804 20 1 0.4313 0.1262 4.5320 21 1 1.7754 0.0086 6.5466 22 1 1.2131 2.1643 5.5880 23 1 -0.3633 0.4556 0.9211 24 1 -0.3634 0.5698 -0.8552 25 1 -0.3633 -1.0256 -0.0659 26 1 1.5384 1.9242 -0.8270 27 1 1.7470 1.8680 0.9319 28 1 3.9054 2.3367 -0.2354 29 1 3.7130 0.8565 -1.1781 30 1 3.8874 -1.2985 2.0065 31 1 3.8040 -1.5058 0.2539 32 1 1.6473 -0.3331 2.0710 33 1 1.5918 -1.7828 1.0774 34 1 6.1870 -0.3052 1.1247 35 1 5.5257 -0.4437 -0.5323 36 1 6.6496 3.7213 1.2816 37 1 6.9604 2.2271 2.1978 38 1 4.2319 3.2079 1.2310 39 1 4.8266 3.2435 2.8971 40 1 4.1447 -0.3810 5.5471 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260163637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:32 Heat of formation + Delta-G solvation = -41.277243 kcal Electronic energy + Delta-G solvation = -20912.283743 eV Core-core repulsion = 18046.086967 eV Total energy + Delta-G solvation = -2866.196776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.16068 -35.83102 -35.00109 -32.68899 -31.91828 -30.12126 -28.33807 -27.41406 -24.48584 -23.48957 -22.72733 -21.54205 -20.19023 -17.57370 -16.79340 -16.58906 -15.41521 -14.85466 -14.59273 -14.41964 -14.12670 -13.95822 -13.73077 -13.61090 -13.13149 -12.67144 -12.29648 -11.97653 -11.70694 -11.64688 -11.46496 -11.29291 -11.14583 -10.99534 -10.94081 -10.72625 -10.53755 -10.21974 -9.99319 -9.77392 -9.73934 -8.99008 -8.89511 -8.69807 -8.53863 -7.66567 -7.61667 -6.12067 -4.12264 2.18810 3.12225 3.20366 3.27568 3.29365 4.29388 4.35847 4.60570 5.16212 5.35521 5.40503 5.54613 5.61139 5.73338 5.82735 5.86964 5.88034 6.03187 6.15657 6.17115 6.20704 6.23768 6.35884 6.39168 6.49631 6.55768 6.60768 6.73996 6.80028 6.88762 6.97124 7.07352 7.23150 7.65650 7.66286 7.71607 7.78712 7.82194 8.34121 8.98300 9.48792 10.97073 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017238 B = 0.009540 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.930644 B = 2934.385079 C = 3930.312440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.059 3.941 4 C -0.112 4.112 5 C -0.002 4.002 6 C -0.072 4.072 7 C 0.066 3.934 8 C -0.427 4.427 9 S 1.204 4.796 10 O -0.887 6.887 11 C -0.426 4.426 12 C -0.086 4.086 13 C 0.021 3.979 14 H 0.069 0.931 15 C -0.494 4.494 16 H 0.055 0.945 17 C 0.069 3.931 18 N -0.893 5.893 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.022 0.978 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 3.003 -8.787 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.069 4.069 4 C -0.150 4.150 5 C -0.004 4.004 6 C -0.111 4.111 7 C -0.061 4.061 8 C -0.566 4.566 9 S 1.406 4.594 10 O -0.882 6.882 11 C -0.565 4.565 12 C -0.125 4.125 13 C 0.002 3.998 14 H 0.087 0.913 15 C -0.532 4.532 16 H 0.073 0.927 17 C -0.133 4.133 18 N -0.531 5.531 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 H 0.040 0.960 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.321 2.926 -9.943 11.229 hybrid contribution 0.020 -0.826 3.249 3.353 sum -4.302 2.100 -6.693 8.229 Atomic orbital electron populations 1.22292 0.88910 1.01205 0.99880 1.62231 1.06250 1.14362 1.43725 1.21933 0.95137 0.89193 1.00643 1.21662 0.94873 1.00072 0.98386 1.20319 0.88473 0.95758 0.95856 1.21106 0.93307 0.95791 1.00868 1.21878 0.95595 0.96159 0.92475 1.28278 1.06812 1.14786 1.06688 1.69968 0.96338 0.95237 0.97820 1.92993 1.35148 1.84494 1.75587 1.27551 1.05007 1.08563 1.15336 1.21450 0.89144 1.01329 1.00578 1.18831 0.99281 0.90353 0.91287 0.91265 1.20697 0.98109 1.33086 1.01300 0.92665 1.24889 0.95625 0.95121 0.97694 1.69838 1.28173 1.35078 1.20002 0.86855 0.84027 0.78252 0.80041 1.20252 1.21401 1.20231 0.95979 0.92147 0.92274 0.92621 0.92642 0.91173 0.92284 0.91245 0.94303 0.92105 0.93992 0.89679 0.88126 0.88568 0.90148 0.92154 0.91948 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.59 60.06 0.58 0.94 16 2 N -0.54 -8.78 4.93 -243.66 -1.20 -9.98 16 3 C 0.06 0.91 5.20 -4.05 -0.02 0.88 16 4 C -0.11 -1.67 3.74 -27.14 -0.10 -1.77 16 5 C 0.00 -0.04 0.36 -154.35 -0.05 -0.10 16 6 C -0.07 -1.37 4.41 -27.28 -0.12 -1.49 16 7 C 0.07 1.23 4.92 -4.36 -0.02 1.20 16 8 C -0.43 -7.44 4.89 38.46 0.19 -7.26 16 9 S 1.20 19.50 12.02 -107.50 -1.29 18.20 16 10 O -0.89 -19.44 18.14 -35.23 -0.64 -20.08 16 11 C -0.43 -7.27 6.43 37.11 0.24 -7.03 16 12 C -0.09 -1.57 4.76 -26.95 -0.13 -1.70 16 13 C 0.02 0.44 1.42 -93.02 -0.13 0.31 16 14 H 0.07 1.74 6.29 -51.05 -0.32 1.41 16 15 C -0.49 -11.44 4.96 -34.73 -0.17 -11.61 16 16 H 0.06 1.27 5.81 -52.49 -0.30 0.96 16 17 C 0.07 1.71 5.39 -17.82 -0.10 1.61 16 18 N -0.89 -23.91 12.50 55.43 0.69 -23.22 16 19 Si 0.88 19.80 29.54 -169.99 -5.02 14.78 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.73 8.08 -51.66 -0.42 0.31 16 27 H 0.06 0.96 5.70 -52.22 -0.30 0.66 16 28 H 0.07 0.89 4.95 -51.96 -0.26 0.63 16 29 H 0.06 0.79 7.94 -51.41 -0.41 0.38 16 30 H 0.07 1.53 8.10 -51.53 -0.42 1.11 16 31 H 0.04 0.69 7.63 -51.45 -0.39 0.29 16 32 H 0.06 1.28 6.36 -52.32 -0.33 0.95 16 33 H 0.04 0.73 8.23 -51.18 -0.42 0.31 16 34 H 0.08 1.68 7.79 -52.21 -0.41 1.28 16 35 H 0.10 1.59 7.67 -52.22 -0.40 1.19 16 36 H 0.10 1.41 8.15 -51.88 -0.42 0.99 16 37 H 0.08 1.56 8.15 -51.90 -0.42 1.14 16 38 H 0.06 0.93 6.10 -52.17 -0.32 0.61 16 39 H 0.06 1.25 8.04 -51.59 -0.41 0.83 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -30.29 302.17 -9.11 -39.40 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.36 Total: 2.36 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 0.15 Total: -26.01 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: -0.51 Total: -33.20 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.64 Total: -20.08 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 19.50 SS G_CDS: -1.29 Total: 18.20 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.29 -9.11 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.879 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds