Wall clock time and date at job start Mon Mar 30 2020 05:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46853 * 110.98940 * 2 1 4 4 C 1.52601 * 109.00043 * 188.15604 * 3 2 1 5 5 C 1.52599 * 111.75421 * 301.30578 * 4 3 2 6 6 C 1.52707 * 111.15583 * 49.14339 * 5 4 3 7 7 C 1.46661 * 111.10553 * 123.67541 * 2 1 3 8 8 C 1.55459 * 106.02756 * 163.70412 * 5 4 3 9 9 S 1.81581 * 107.89173 * 55.00270 * 8 5 4 10 10 O 1.42101 * 109.56132 * 172.35709 * 9 8 5 11 11 C 1.81701 * 102.19630 * 56.31223 * 9 8 5 12 12 C 1.52910 * 109.13415 * 307.25807 * 11 9 8 13 13 C 1.51442 * 113.25088 * 280.69739 * 5 4 3 14 14 H 1.10535 * 107.81823 * 198.24310 * 13 5 4 15 15 C 1.50105 * 113.02795 * 79.70651 * 13 5 4 16 16 H 1.07998 * 120.00271 * 294.83083 * 15 13 5 17 17 C 1.37873 * 120.00088 * 114.83324 * 15 13 5 18 18 N 1.31516 * 120.00075 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00288 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46583 * 59.99968 * 19 17 15 21 21 H 1.48500 * 109.47566 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47083 * 300.00321 * 19 17 15 23 23 H 1.08999 * 109.47144 * 296.31990 * 1 2 3 24 24 H 1.09000 * 109.47579 * 56.32369 * 1 2 3 25 25 H 1.09000 * 109.47033 * 176.32268 * 1 2 3 26 26 H 1.09472 * 108.80430 * 307.05663 * 3 2 1 27 27 H 1.08483 * 110.23108 * 66.27448 * 3 2 1 28 28 H 1.08945 * 109.71435 * 178.37952 * 4 3 2 29 29 H 1.09915 * 108.55608 * 61.12727 * 4 3 2 30 30 H 1.09697 * 108.96022 * 192.63626 * 6 5 4 31 31 H 1.09850 * 108.67354 * 76.17753 * 6 5 4 32 32 H 1.08293 * 110.41429 * 300.86774 * 7 2 1 33 33 H 1.10308 * 107.75231 * 57.51592 * 7 2 1 34 34 H 1.08499 * 108.63752 * 174.48904 * 8 5 4 35 35 H 1.08489 * 108.66532 * 295.48923 * 8 5 4 36 36 H 1.09076 * 109.50686 * 187.31192 * 11 9 8 37 37 H 1.09043 * 109.54650 * 67.34405 * 11 9 8 38 38 H 1.08575 * 110.21288 * 297.29705 * 12 11 9 39 39 H 1.09590 * 108.72633 * 178.61525 * 12 11 9 40 40 H 0.96996 * 120.00186 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3711 0.0000 4 6 3.5065 1.3234 -0.2047 5 6 4.1992 0.5090 0.8841 6 6 3.5158 -0.8424 1.0806 7 6 1.9971 -0.7587 1.1386 8 6 5.6213 0.1905 0.3427 9 16 6.4129 1.7623 -0.1044 10 8 7.7750 1.5314 -0.4369 11 6 6.3184 2.6960 1.4515 12 6 4.8716 2.7002 1.9464 13 6 4.3802 1.2737 2.1787 14 1 5.1559 0.7557 2.7719 15 6 3.1332 1.3191 3.0131 16 1 2.2599 1.8413 2.6511 17 6 3.1027 0.6943 4.2417 18 7 4.1663 0.0589 4.6829 19 14 1.5512 0.7514 5.2804 20 1 0.4313 0.1262 4.5320 21 1 1.7754 0.0086 6.5466 22 1 1.2131 2.1643 5.5880 23 1 -0.3633 0.4556 0.9211 24 1 -0.3634 0.5698 -0.8552 25 1 -0.3633 -1.0256 -0.0659 26 1 1.5384 1.9242 -0.8270 27 1 1.7470 1.8680 0.9319 28 1 3.9054 2.3367 -0.2354 29 1 3.7130 0.8565 -1.1781 30 1 3.8874 -1.2985 2.0065 31 1 3.8040 -1.5058 0.2539 32 1 1.6473 -0.3331 2.0710 33 1 1.5918 -1.7828 1.0774 34 1 6.1870 -0.3052 1.1247 35 1 5.5257 -0.4437 -0.5323 36 1 6.6496 3.7213 1.2816 37 1 6.9604 2.2271 2.1978 38 1 4.2319 3.2079 1.2310 39 1 4.8266 3.2435 2.8971 40 1 4.1447 -0.3810 5.5471 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260163637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:32 Heat of formation + Delta-G solvation = -63.018754 kcal Electronic energy + Delta-G solvation = -20913.226525 eV Core-core repulsion = 18046.086967 eV Total energy + Delta-G solvation = -2867.139558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.59246 -37.25033 -36.62203 -34.46036 -33.44482 -31.46657 -29.68448 -29.12148 -25.82755 -25.12820 -24.10589 -22.95446 -21.66969 -19.04519 -18.46116 -18.18208 -16.84308 -16.44042 -16.09737 -15.92468 -15.49853 -15.39024 -15.11537 -15.05544 -14.70995 -14.26014 -13.66603 -13.50716 -13.13283 -13.03070 -12.96748 -12.87094 -12.74521 -12.59400 -12.45209 -12.22094 -12.19777 -11.61529 -11.48252 -11.23902 -11.23285 -10.66472 -10.58117 -10.33136 -10.28969 -9.13366 -8.96411 -8.05162 -6.06524 0.80921 1.37852 1.40917 1.44716 1.71358 2.43729 2.89188 3.27092 3.35244 3.93333 4.01317 4.18879 4.21328 4.37518 4.48049 4.57704 4.67700 4.72008 4.73930 4.78968 4.93494 4.95241 5.05388 5.12056 5.13420 5.15031 5.19942 5.28226 5.38984 5.42568 5.51303 5.59955 5.71382 5.85194 5.96032 6.15801 6.40635 6.46500 6.51251 7.12929 7.55905 9.04084 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017238 B = 0.009540 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.930644 B = 2934.385079 C = 3930.312440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.054 3.946 4 C -0.118 4.118 5 C -0.001 4.001 6 C -0.070 4.070 7 C 0.072 3.928 8 C -0.433 4.433 9 S 1.291 4.709 10 O -0.937 6.937 11 C -0.430 4.430 12 C -0.081 4.081 13 C 0.020 3.980 14 H 0.017 0.983 15 C -0.474 4.474 16 H 0.063 0.937 17 C 0.018 3.982 18 N -0.934 5.934 19 Si 0.925 3.075 20 H -0.271 1.271 21 H -0.300 1.300 22 H -0.270 1.270 23 H 0.010 0.990 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.034 0.966 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.048 0.952 38 H 0.101 0.899 39 H 0.040 0.960 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 4.725 -11.860 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.263 5.263 3 C -0.074 4.074 4 C -0.155 4.155 5 C -0.003 4.003 6 C -0.109 4.109 7 C -0.056 4.056 8 C -0.571 4.571 9 S 1.494 4.506 10 O -0.933 6.933 11 C -0.569 4.569 12 C -0.120 4.120 13 C 0.001 3.999 14 H 0.036 0.964 15 C -0.513 4.513 16 H 0.081 0.919 17 C -0.179 4.179 18 N -0.575 5.575 19 Si 0.753 3.247 20 H -0.196 1.196 21 H -0.227 1.227 22 H -0.195 1.195 23 H 0.028 0.972 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.059 0.941 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.842 4.663 -13.025 15.018 hybrid contribution 0.460 -1.373 4.189 4.432 sum -5.382 3.290 -8.837 10.857 Atomic orbital electron populations 1.22393 0.87363 1.02149 1.00485 1.62270 1.07649 1.14753 1.41662 1.22046 0.95497 0.88750 1.01070 1.21769 0.94548 1.01274 0.97950 1.20176 0.89214 0.95363 0.95517 1.21070 0.94049 0.96661 0.99100 1.21680 0.95013 0.96726 0.92185 1.28342 1.06250 1.16074 1.06470 1.69271 0.93285 0.92688 0.95398 1.92884 1.38430 1.85032 1.76926 1.27598 1.03651 1.10662 1.14975 1.21322 0.90537 0.99200 1.00897 1.18831 0.96836 0.92047 0.92144 0.96418 1.21037 0.98810 1.30721 1.00708 0.91892 1.25469 0.97341 0.95804 0.99267 1.70014 1.30049 1.37370 1.20076 0.86120 0.81893 0.78219 0.78476 1.19611 1.22653 1.19542 0.97165 0.89321 0.91638 0.88876 0.94793 0.88272 0.89365 0.95748 0.92802 0.95290 0.93635 0.93099 0.85829 0.85224 0.93335 0.88051 0.94133 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.59 127.69 1.22 1.83 16 2 N -0.54 -15.82 4.93 -924.81 -4.56 -20.39 16 3 C 0.05 1.44 5.20 86.18 0.45 1.88 16 4 C -0.12 -3.02 3.74 30.33 0.11 -2.90 16 5 C 0.00 -0.04 0.36 -52.08 -0.02 -0.05 16 6 C -0.07 -2.68 4.41 30.24 0.13 -2.55 16 7 C 0.07 2.62 4.92 86.09 0.42 3.04 16 8 C -0.43 -14.66 4.89 72.83 0.36 -14.31 16 9 S 1.29 38.55 12.02 -56.49 -0.68 37.87 16 10 O -0.94 -39.44 18.14 -148.98 -2.70 -42.14 16 11 C -0.43 -14.04 6.43 71.95 0.46 -13.57 16 12 C -0.08 -2.83 4.76 30.45 0.14 -2.69 16 13 C 0.02 0.86 1.42 -12.35 -0.02 0.84 16 14 H 0.02 0.93 6.29 -1.56 -0.01 0.92 16 15 C -0.47 -22.22 4.96 25.41 0.13 -22.10 16 16 H 0.06 2.84 5.81 -2.91 -0.02 2.82 16 17 C 0.02 0.94 5.39 84.65 0.46 1.39 16 18 N -0.93 -53.11 12.50 21.45 0.27 -52.84 16 19 Si 0.93 41.68 29.54 68.60 2.03 43.71 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 24 H 0.09 1.71 8.07 -2.39 -0.02 1.69 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.87 8.08 -2.14 -0.02 1.85 16 27 H 0.03 1.06 5.70 -2.66 -0.02 1.05 16 28 H 0.10 1.95 4.95 -2.42 -0.01 1.93 16 29 H 0.09 1.85 7.94 -1.90 -0.02 1.83 16 30 H 0.02 1.12 8.10 -2.02 -0.02 1.11 16 31 H 0.05 1.86 7.63 -1.93 -0.01 1.85 16 32 H 0.03 1.23 6.36 -2.76 -0.02 1.21 16 33 H 0.05 1.57 8.23 -1.69 -0.01 1.56 16 34 H 0.05 2.08 7.79 -2.65 -0.02 2.06 16 35 H 0.12 3.60 7.67 -2.66 -0.02 3.58 16 36 H 0.13 3.39 8.15 -2.35 -0.02 3.37 16 37 H 0.05 1.91 8.15 -2.37 -0.02 1.89 16 38 H 0.10 2.71 6.10 -2.61 -0.02 2.69 16 39 H 0.04 1.59 8.04 -2.07 -0.02 1.57 16 40 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -69.51 302.17 -0.77 -70.28 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.03 Total: 12.69 kcal Atomic # 6 Polarization: -53.03 SS G_CDS: 3.85 Total: -49.18 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -4.30 Total: -73.23 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -2.70 Total: -42.14 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 38.55 SS G_CDS: -0.68 Total: 37.87 kcal Total: -69.51 -0.77 -70.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.259 kcal (2) G-P(sol) polarization free energy of solvation -69.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds