Wall clock time and date at job start Mon Mar 30 2020 05:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46942 * 110.91477 * 2 1 4 4 C 1.52461 * 108.76624 * 170.78164 * 3 2 1 5 5 C 1.52223 * 112.44786 * 57.87961 * 4 3 2 6 6 C 1.52232 * 112.59628 * 315.34485 * 5 4 3 7 7 C 1.46583 * 111.14245 * 236.97838 * 2 1 3 8 8 C 1.55342 * 106.36859 * 199.32168 * 5 4 3 9 9 S 1.81595 * 107.88099 * 305.71255 * 8 5 4 10 10 O 1.42096 * 109.55509 * 187.32192 * 9 8 5 11 11 C 1.81694 * 102.17797 * 303.38684 * 9 8 5 12 12 C 1.52901 * 109.19379 * 52.81849 * 11 9 8 13 13 C 1.51994 * 112.45929 * 82.56020 * 5 4 3 14 14 H 1.10303 * 107.79463 * 162.76551 * 13 5 4 15 15 C 1.50267 * 112.01356 * 280.99748 * 13 5 4 16 16 H 1.07996 * 119.99951 * 65.16290 * 15 13 5 17 17 C 1.37883 * 119.99962 * 245.15587 * 15 13 5 18 18 N 1.31515 * 119.99996 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99786 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47315 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46985 * 120.00336 * 19 17 15 22 22 H 1.48505 * 109.47020 * 240.00006 * 19 17 15 23 23 H 1.08999 * 109.46667 * 60.00497 * 1 2 3 24 24 H 1.08996 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47161 * 300.00152 * 1 2 3 26 26 H 1.09410 * 108.84865 * 51.78000 * 3 2 1 27 27 H 1.08523 * 110.07955 * 292.47504 * 3 2 1 28 28 H 1.10175 * 108.28481 * 297.96245 * 4 3 2 29 29 H 1.09021 * 109.68263 * 181.56597 * 4 3 2 30 30 H 1.09965 * 108.97635 * 162.08764 * 6 5 4 31 31 H 1.10230 * 108.49121 * 277.32713 * 6 5 4 32 32 H 1.10131 * 108.05190 * 303.24178 * 7 2 1 33 33 H 1.08861 * 109.74391 * 59.72751 * 7 2 1 34 34 H 1.08509 * 108.72622 * 65.22833 * 8 5 4 35 35 H 1.08523 * 108.69589 * 186.21483 * 8 5 4 36 36 H 1.09119 * 109.47609 * 172.73782 * 11 9 8 37 37 H 1.09028 * 109.58368 * 292.66883 * 11 9 8 38 38 H 1.09737 * 108.53996 * 181.67470 * 12 11 9 39 39 H 1.08546 * 110.25749 * 63.43406 * 12 11 9 40 40 H 0.96994 * 119.99799 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9937 1.3726 0.0000 4 6 3.4998 1.3221 0.2313 5 6 4.2213 0.4883 -0.8182 6 6 3.5126 -0.8273 -1.1087 7 6 1.9978 -0.7450 -1.1463 8 6 5.6003 0.1146 -0.2082 9 16 6.4169 1.6524 0.3076 10 8 7.7487 1.3702 0.7148 11 6 6.4441 2.6087 -1.2371 12 6 5.0297 2.6714 -1.8144 13 6 4.4974 1.2703 -2.0919 14 1 5.2718 0.7274 -2.6596 15 6 3.2792 1.3716 -2.9659 16 1 2.4135 1.9194 -2.6241 17 6 3.2668 0.7653 -4.2042 18 7 4.3209 0.0979 -4.6202 19 14 1.7527 0.8919 -5.2908 20 1 0.7112 1.6915 -4.5974 21 1 2.1151 1.5543 -6.5696 22 1 1.2284 -0.4693 -5.5698 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.5215 1.9315 0.8135 27 1 1.7627 1.8597 -0.9418 28 1 3.6827 0.8740 1.2210 29 1 3.9008 2.3354 0.2618 30 1 3.8757 -1.2249 -2.0675 31 1 3.8072 -1.5603 -0.3400 32 1 1.5856 -1.7656 -1.1095 33 1 1.6487 -0.2915 -2.0723 34 1 5.4386 -0.5299 0.6496 35 1 6.1917 -0.3877 -0.9669 36 1 6.8001 3.6198 -1.0328 37 1 7.1118 2.1282 -1.9527 38 1 5.0636 3.2249 -2.7614 39 1 4.3701 3.2034 -1.1361 40 1 4.3122 -0.3283 -5.4915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260163658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:42 Heat of formation + Delta-G solvation = -41.326600 kcal Electronic energy + Delta-G solvation = -20896.714579 eV Core-core repulsion = 18030.515663 eV Total energy + Delta-G solvation = -2866.198916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.16213 -35.87370 -35.00742 -32.65517 -31.93221 -30.15346 -28.35097 -27.41067 -24.49340 -23.50171 -22.74852 -21.56519 -20.15973 -17.54108 -16.79005 -16.57425 -15.43348 -14.86769 -14.62833 -14.40848 -14.14337 -13.98241 -13.71541 -13.58030 -13.14742 -12.67687 -12.31865 -11.97540 -11.71561 -11.65964 -11.49688 -11.29446 -11.11999 -11.03738 -10.95760 -10.67981 -10.53115 -10.20002 -9.98418 -9.80471 -9.66199 -8.98395 -8.88481 -8.70972 -8.54051 -7.68925 -7.62319 -6.12163 -4.12325 2.18704 3.12171 3.18855 3.29362 3.30267 4.29742 4.36007 4.58700 5.16309 5.35726 5.41527 5.53161 5.60396 5.72088 5.82057 5.85010 5.87735 6.01272 6.14184 6.15730 6.21152 6.23193 6.36160 6.38380 6.50332 6.55914 6.60134 6.71036 6.81806 6.88491 6.94714 7.10014 7.22633 7.65501 7.66364 7.70792 7.77172 7.82306 8.33674 8.98774 9.49317 10.97119 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.009563 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.935253 B = 2927.116765 C = 3943.118596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.058 3.942 4 C -0.111 4.111 5 C -0.001 4.001 6 C -0.072 4.072 7 C 0.068 3.932 8 C -0.425 4.425 9 S 1.204 4.796 10 O -0.887 6.887 11 C -0.426 4.426 12 C -0.086 4.086 13 C 0.019 3.981 14 H 0.069 0.931 15 C -0.493 4.493 16 H 0.057 0.943 17 C 0.068 3.932 18 N -0.893 5.893 19 Si 0.879 3.121 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.022 0.978 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 2.991 8.639 10.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.070 4.070 4 C -0.149 4.149 5 C -0.003 4.003 6 C -0.111 4.111 7 C -0.059 4.059 8 C -0.564 4.564 9 S 1.407 4.593 10 O -0.882 6.882 11 C -0.565 4.565 12 C -0.124 4.124 13 C 0.001 3.999 14 H 0.087 0.913 15 C -0.531 4.531 16 H 0.075 0.925 17 C -0.134 4.134 18 N -0.531 5.531 19 Si 0.707 3.293 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.664 2.887 9.831 11.257 hybrid contribution 0.117 -0.806 -3.253 3.354 sum -4.547 2.081 6.578 8.263 Atomic orbital electron populations 1.22309 0.88905 1.01149 0.99999 1.62348 1.06272 1.14555 1.43235 1.21946 0.95179 0.89131 1.00711 1.21575 0.94760 1.00091 0.98425 1.20170 0.88978 0.95589 0.95578 1.20991 0.93032 0.95666 1.01378 1.21787 0.95721 0.96424 0.92017 1.28254 1.06927 1.14369 1.06844 1.69977 0.97472 0.95637 0.96244 1.92992 1.38067 1.84060 1.73094 1.27552 1.05023 1.08765 1.15138 1.21398 0.89663 1.01303 1.00073 1.18977 0.98905 0.90585 0.91472 0.91283 1.20823 0.99838 1.32349 1.00060 0.92524 1.24893 0.95540 0.95081 0.97845 1.69863 1.28490 1.34820 1.19968 0.86753 0.83692 0.77853 0.81027 1.19725 1.21099 1.21055 0.95988 0.92245 0.92080 0.92522 0.92628 0.92477 0.91076 0.90849 0.94678 0.93665 0.92879 0.88122 0.89708 0.88559 0.90170 0.92037 0.92071 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.57 60.07 0.57 0.92 16 2 N -0.54 -8.68 4.96 -243.86 -1.21 -9.89 16 3 C 0.06 0.90 5.22 -4.08 -0.02 0.87 16 4 C -0.11 -1.66 3.72 -27.40 -0.10 -1.76 16 5 C 0.00 -0.03 0.38 -154.57 -0.06 -0.09 16 6 C -0.07 -1.38 4.35 -27.76 -0.12 -1.50 16 7 C 0.07 1.24 4.95 -4.63 -0.02 1.22 16 8 C -0.42 -7.42 4.83 38.40 0.19 -7.24 16 9 S 1.20 19.48 12.07 -107.50 -1.30 18.19 16 10 O -0.89 -19.42 18.14 -35.23 -0.64 -20.06 16 11 C -0.43 -7.25 6.44 37.11 0.24 -7.01 16 12 C -0.09 -1.56 4.71 -27.08 -0.13 -1.69 16 13 C 0.02 0.40 1.32 -92.79 -0.12 0.28 16 14 H 0.07 1.73 6.37 -51.18 -0.33 1.40 16 15 C -0.49 -11.40 5.15 -34.65 -0.18 -11.58 16 16 H 0.06 1.30 5.82 -52.49 -0.31 1.00 16 17 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -23.88 12.51 55.43 0.69 -23.19 16 19 Si 0.88 19.80 29.54 -169.99 -5.02 14.78 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 25 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 26 H 0.06 0.74 8.10 -51.70 -0.42 0.32 16 27 H 0.06 0.97 5.75 -52.20 -0.30 0.67 16 28 H 0.06 0.76 7.91 -51.26 -0.41 0.36 16 29 H 0.07 0.91 4.95 -51.92 -0.26 0.65 16 30 H 0.07 1.64 7.99 -51.38 -0.41 1.23 16 31 H 0.03 0.63 7.58 -51.23 -0.39 0.24 16 32 H 0.04 0.78 8.19 -51.28 -0.42 0.36 16 33 H 0.05 1.09 6.75 -52.01 -0.35 0.74 16 34 H 0.10 1.60 7.71 -52.20 -0.40 1.20 16 35 H 0.08 1.67 7.81 -52.20 -0.41 1.27 16 36 H 0.10 1.41 8.15 -51.86 -0.42 0.98 16 37 H 0.08 1.55 8.14 -51.91 -0.42 1.13 16 38 H 0.06 1.22 8.08 -51.51 -0.42 0.81 16 39 H 0.06 0.94 6.08 -52.18 -0.32 0.63 16 40 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 302.72 15.07 4.56 4.56 Total: -1.00 -30.34 302.72 -9.14 -39.48 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.37 Total: 2.10 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 0.15 Total: -25.96 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: -0.52 Total: -33.08 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.64 Total: -20.06 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 19.48 SS G_CDS: -1.30 Total: 18.19 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.34 -9.14 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.851 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds