Wall clock time and date at job start Mon Mar 30 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46942 * 110.91477 * 2 1 4 4 C 1.52461 * 108.76624 * 170.78164 * 3 2 1 5 5 C 1.52223 * 112.44786 * 57.87961 * 4 3 2 6 6 C 1.52232 * 112.59628 * 315.34485 * 5 4 3 7 7 C 1.46583 * 111.14245 * 236.97838 * 2 1 3 8 8 C 1.55342 * 106.36859 * 199.32168 * 5 4 3 9 9 S 1.81595 * 107.88099 * 305.71255 * 8 5 4 10 10 O 1.42096 * 109.55509 * 187.32192 * 9 8 5 11 11 C 1.81694 * 102.17797 * 303.38684 * 9 8 5 12 12 C 1.52901 * 109.19379 * 52.81849 * 11 9 8 13 13 C 1.51994 * 112.45929 * 82.56020 * 5 4 3 14 14 H 1.10303 * 107.79463 * 162.76551 * 13 5 4 15 15 C 1.50267 * 112.01356 * 280.99748 * 13 5 4 16 16 H 1.07996 * 119.99951 * 65.16290 * 15 13 5 17 17 C 1.37883 * 119.99962 * 245.15587 * 15 13 5 18 18 N 1.31515 * 119.99996 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99786 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47315 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46985 * 120.00336 * 19 17 15 22 22 H 1.48505 * 109.47020 * 240.00006 * 19 17 15 23 23 H 1.08999 * 109.46667 * 60.00497 * 1 2 3 24 24 H 1.08996 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47161 * 300.00152 * 1 2 3 26 26 H 1.09410 * 108.84865 * 51.78000 * 3 2 1 27 27 H 1.08523 * 110.07955 * 292.47504 * 3 2 1 28 28 H 1.10175 * 108.28481 * 297.96245 * 4 3 2 29 29 H 1.09021 * 109.68263 * 181.56597 * 4 3 2 30 30 H 1.09965 * 108.97635 * 162.08764 * 6 5 4 31 31 H 1.10230 * 108.49121 * 277.32713 * 6 5 4 32 32 H 1.10131 * 108.05190 * 303.24178 * 7 2 1 33 33 H 1.08861 * 109.74391 * 59.72751 * 7 2 1 34 34 H 1.08509 * 108.72622 * 65.22833 * 8 5 4 35 35 H 1.08523 * 108.69589 * 186.21483 * 8 5 4 36 36 H 1.09119 * 109.47609 * 172.73782 * 11 9 8 37 37 H 1.09028 * 109.58368 * 292.66883 * 11 9 8 38 38 H 1.09737 * 108.53996 * 181.67470 * 12 11 9 39 39 H 1.08546 * 110.25749 * 63.43406 * 12 11 9 40 40 H 0.96994 * 119.99799 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9937 1.3726 0.0000 4 6 3.4998 1.3221 0.2313 5 6 4.2213 0.4883 -0.8182 6 6 3.5126 -0.8273 -1.1087 7 6 1.9978 -0.7450 -1.1463 8 6 5.6003 0.1146 -0.2082 9 16 6.4169 1.6524 0.3076 10 8 7.7487 1.3702 0.7148 11 6 6.4441 2.6087 -1.2371 12 6 5.0297 2.6714 -1.8144 13 6 4.4974 1.2703 -2.0919 14 1 5.2718 0.7274 -2.6596 15 6 3.2792 1.3716 -2.9659 16 1 2.4135 1.9194 -2.6241 17 6 3.2668 0.7653 -4.2042 18 7 4.3209 0.0979 -4.6202 19 14 1.7527 0.8919 -5.2908 20 1 0.7112 1.6915 -4.5974 21 1 2.1151 1.5543 -6.5696 22 1 1.2284 -0.4693 -5.5698 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.5215 1.9315 0.8135 27 1 1.7627 1.8597 -0.9418 28 1 3.6827 0.8740 1.2210 29 1 3.9008 2.3354 0.2618 30 1 3.8757 -1.2249 -2.0675 31 1 3.8072 -1.5603 -0.3400 32 1 1.5856 -1.7656 -1.1095 33 1 1.6487 -0.2915 -2.0723 34 1 5.4386 -0.5299 0.6496 35 1 6.1917 -0.3877 -0.9669 36 1 6.8001 3.6198 -1.0328 37 1 7.1118 2.1282 -1.9527 38 1 5.0636 3.2249 -2.7614 39 1 4.3701 3.2034 -1.1361 40 1 4.3122 -0.3283 -5.4915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260163658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:41 Heat of formation + Delta-G solvation = -63.094332 kcal Electronic energy + Delta-G solvation = -20897.658498 eV Core-core repulsion = 18030.515663 eV Total energy + Delta-G solvation = -2867.142836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.59199 -37.28363 -36.62786 -34.43174 -33.45020 -31.49792 -29.68982 -29.11402 -25.83245 -25.13063 -24.13080 -22.96753 -21.64272 -19.00439 -18.45569 -18.17215 -16.85795 -16.43716 -16.11612 -15.92790 -15.51996 -15.41554 -15.08710 -15.02405 -14.72269 -14.26528 -13.67863 -13.51052 -13.12204 -13.04395 -12.98151 -12.92927 -12.74130 -12.59029 -12.39428 -12.22670 -12.19365 -11.60009 -11.43996 -11.26142 -11.17217 -10.67221 -10.57517 -10.34455 -10.28721 -9.13595 -8.97696 -8.05211 -6.06560 0.80936 1.34983 1.41227 1.47215 1.71486 2.43827 2.89492 3.27433 3.34347 3.93927 4.02292 4.17516 4.21537 4.37685 4.47953 4.56476 4.65437 4.70739 4.73940 4.78174 4.94682 4.95190 5.06278 5.11403 5.14121 5.14787 5.20425 5.29000 5.35324 5.42924 5.53311 5.61161 5.70699 5.86257 5.97115 6.16407 6.38888 6.45842 6.50710 7.13305 7.56388 9.04517 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.009563 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.935253 B = 2927.116765 C = 3943.118596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.538 5.538 3 C 0.054 3.946 4 C -0.118 4.118 5 C 0.001 3.999 6 C -0.070 4.070 7 C 0.074 3.926 8 C -0.431 4.431 9 S 1.292 4.708 10 O -0.937 6.937 11 C -0.430 4.430 12 C -0.081 4.081 13 C 0.018 3.982 14 H 0.018 0.982 15 C -0.472 4.472 16 H 0.064 0.936 17 C 0.018 3.982 18 N -0.934 5.934 19 Si 0.924 3.076 20 H -0.259 1.259 21 H -0.292 1.292 22 H -0.292 1.292 23 H 0.012 0.988 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.033 0.967 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.026 0.974 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.023 0.977 34 H 0.123 0.877 35 H 0.050 0.950 36 H 0.130 0.870 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.102 0.898 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 4.721 11.661 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.262 5.262 3 C -0.073 4.073 4 C -0.156 4.156 5 C 0.000 4.000 6 C -0.109 4.109 7 C -0.054 4.054 8 C -0.570 4.570 9 S 1.494 4.506 10 O -0.932 6.932 11 C -0.569 4.569 12 C -0.119 4.119 13 C -0.001 4.001 14 H 0.036 0.964 15 C -0.511 4.511 16 H 0.082 0.918 17 C -0.179 4.179 18 N -0.575 5.575 19 Si 0.752 3.248 20 H -0.183 1.183 21 H -0.219 1.219 22 H -0.219 1.219 23 H 0.031 0.969 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.051 0.949 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.148 0.852 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.120 0.880 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.256 4.631 12.863 15.035 hybrid contribution 0.584 -1.359 -4.179 4.433 sum -5.672 3.272 8.684 10.877 Atomic orbital electron populations 1.22412 0.87261 1.01972 1.00826 1.62385 1.07760 1.14886 1.41198 1.22048 0.95522 0.88772 1.01007 1.21683 0.94457 1.01188 0.98233 1.20033 0.89677 0.95151 0.95185 1.20952 0.94004 0.96675 0.99220 1.21603 0.94941 0.97011 0.91855 1.28320 1.06398 1.15636 1.06645 1.69289 0.94438 0.93060 0.93845 1.92883 1.41177 1.84607 1.74580 1.27596 1.03675 1.10805 1.14811 1.21273 0.91048 0.99260 1.00322 1.18976 0.96613 0.92172 0.92330 0.96404 1.21150 1.00379 1.30012 0.99547 0.91797 1.25467 0.97173 0.95769 0.99495 1.70030 1.30402 1.37085 1.20027 0.86020 0.81837 0.77335 0.79587 1.18257 1.21883 1.21871 0.96946 0.91614 0.89321 0.88804 0.94873 0.89490 0.88243 0.95481 0.93482 0.93178 0.95892 0.85922 0.93068 0.85190 0.93290 0.94190 0.87988 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.57 127.69 1.22 1.79 16 2 N -0.54 -15.65 4.96 -925.44 -4.59 -20.25 16 3 C 0.05 1.44 5.22 86.12 0.45 1.89 16 4 C -0.12 -3.04 3.72 30.16 0.11 -2.93 16 5 C 0.00 0.04 0.38 -52.22 -0.02 0.02 16 6 C -0.07 -2.69 4.35 29.93 0.13 -2.56 16 7 C 0.07 2.66 4.95 85.95 0.43 3.09 16 8 C -0.43 -14.64 4.83 72.79 0.35 -14.29 16 9 S 1.29 38.51 12.07 -56.49 -0.68 37.83 16 10 O -0.94 -39.35 18.14 -148.98 -2.70 -42.05 16 11 C -0.43 -13.96 6.44 71.95 0.46 -13.50 16 12 C -0.08 -2.81 4.71 30.37 0.14 -2.66 16 13 C 0.02 0.76 1.32 -12.20 -0.02 0.74 16 14 H 0.02 0.93 6.37 -1.69 -0.01 0.92 16 15 C -0.47 -22.10 5.15 25.47 0.13 -21.97 16 16 H 0.06 2.88 5.82 -2.91 -0.02 2.87 16 17 C 0.02 0.92 5.46 84.66 0.46 1.38 16 18 N -0.93 -53.01 12.51 21.45 0.27 -52.74 16 19 Si 0.92 41.70 29.54 68.60 2.03 43.73 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 24 H 0.07 1.49 8.11 -2.39 -0.02 1.47 16 25 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 26 H 0.09 1.88 8.10 -2.17 -0.02 1.87 16 27 H 0.03 1.05 5.75 -2.64 -0.02 1.03 16 28 H 0.09 1.82 7.91 -1.76 -0.01 1.81 16 29 H 0.10 1.98 4.95 -2.38 -0.01 1.97 16 30 H 0.03 1.27 7.99 -1.87 -0.01 1.25 16 31 H 0.05 1.67 7.58 -1.73 -0.01 1.65 16 32 H 0.05 1.70 8.19 -1.78 -0.01 1.69 16 33 H 0.02 0.95 6.75 -2.46 -0.02 0.94 16 34 H 0.12 3.60 7.71 -2.65 -0.02 3.58 16 35 H 0.05 2.09 7.81 -2.64 -0.02 2.07 16 36 H 0.13 3.37 8.15 -2.32 -0.02 3.35 16 37 H 0.05 1.91 8.14 -2.37 -0.02 1.89 16 38 H 0.04 1.56 8.08 -1.99 -0.02 1.55 16 39 H 0.10 2.72 6.08 -2.63 -0.02 2.71 16 40 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -69.50 302.72 -0.79 -70.30 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.04 Total: 12.19 kcal Atomic # 6 Polarization: -52.85 SS G_CDS: 3.85 Total: -49.00 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -4.33 Total: -72.99 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -2.70 Total: -42.05 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 38.51 SS G_CDS: -0.68 Total: 37.83 kcal Total: -69.50 -0.79 -70.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.201 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds