Wall clock time and date at job start Mon Mar 30 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47399 * 300.00342 * 3 2 1 6 6 H 1.48503 * 109.47105 * 60.00300 * 3 2 1 7 7 C 1.37881 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00000 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.40448 * 299.84494 * 9 7 2 11 11 C 1.53244 * 109.34234 * 59.64743 * 9 7 2 12 12 S 1.81900 * 108.50785 * 182.07930 * 11 9 7 13 13 C 1.81900 * 101.91335 * 308.69685 * 12 11 9 14 14 C 1.53249 * 108.50572 * 51.30238 * 13 12 11 15 15 N 1.46466 * 109.86115 * 297.99485 * 14 13 12 16 16 C 1.46897 * 111.00095 * 197.76309 * 15 14 13 17 17 C 1.53002 * 109.46759 * 50.13791 * 16 15 14 18 18 C 1.53177 * 109.54236 * 179.56633 * 17 16 15 19 19 C 1.53090 * 109.16363 * 183.15261 * 18 17 16 20 20 O 1.42910 * 109.41314 * 57.60927 * 19 18 17 21 21 C 1.42899 * 114.10012 * 298.84243 * 20 19 18 22 22 C 1.53086 * 109.41335 * 61.15457 * 21 20 19 23 23 H 0.97004 * 119.99729 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.63062 * 301.78842 * 11 9 7 25 25 H 1.09003 * 109.63426 * 62.17804 * 11 9 7 26 26 H 1.08999 * 109.62663 * 171.00698 * 13 12 11 27 27 H 1.08993 * 109.62895 * 291.59502 * 13 12 11 28 28 H 1.08994 * 109.40195 * 177.87594 * 14 13 12 29 29 H 1.09001 * 109.40301 * 58.11843 * 14 13 12 30 30 H 1.08997 * 109.47670 * 290.13866 * 16 15 14 31 31 H 1.09000 * 109.47054 * 170.13335 * 16 15 14 32 32 H 1.09001 * 109.54443 * 299.83604 * 17 16 15 33 33 H 1.09004 * 109.52248 * 303.05901 * 18 17 16 34 34 H 1.08997 * 109.52363 * 63.24716 * 18 17 16 35 35 H 1.09001 * 109.48389 * 297.63023 * 19 18 17 36 36 H 1.08998 * 109.48649 * 177.59379 * 19 18 17 37 37 H 1.09004 * 109.47744 * 301.17910 * 21 20 19 38 38 H 1.08999 * 109.48858 * 181.14976 * 21 20 19 39 39 H 1.09008 * 109.52370 * 182.48123 * 22 21 20 40 40 H 1.09003 * 109.51932 * 62.30158 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6271 -2.5571 0.8914 11 6 0.3639 -2.5731 -1.2480 12 16 -0.5804 -4.1269 -1.1938 13 6 0.7312 -5.3534 -0.9039 14 6 1.5677 -4.8967 0.2962 15 7 2.2040 -3.6114 -0.0011 16 6 3.3183 -3.3502 0.9198 17 6 4.2394 -4.5711 0.9650 18 6 5.4079 -4.2965 1.9166 19 6 6.3649 -5.4912 1.8952 20 8 6.8167 -5.7140 0.5578 21 6 5.7720 -6.0223 -0.3672 22 6 4.7912 -4.8489 -0.4366 23 1 -0.4850 0.8401 0.0004 24 1 -0.3233 -1.7271 -1.2593 25 1 0.9868 -2.5508 -2.1422 26 1 0.2839 -6.3242 -0.6904 27 1 1.3663 -5.4259 -1.7867 28 1 2.3357 -5.6410 0.5065 29 1 0.9218 -4.7882 1.1675 30 1 2.9266 -3.1535 1.9177 31 1 3.8808 -2.4834 0.5728 32 1 3.6787 -5.4381 1.3146 33 1 5.9373 -3.3999 1.5940 34 1 5.0279 -4.1522 2.9279 35 1 5.8459 -6.3792 2.2562 36 1 7.2203 -5.2834 2.5380 37 1 5.2453 -6.9172 -0.0357 38 1 6.2002 -6.1972 -1.3542 39 1 3.9701 -5.0997 -1.1083 40 1 5.3082 -3.9635 -0.8067 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:12 Heat of formation + Delta-G solvation = -45.480565 kcal Electronic energy + Delta-G solvation = -20092.595953 eV Core-core repulsion = 17226.216908 eV Total energy + Delta-G solvation = -2866.379046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.49636 -37.55011 -34.12790 -32.91442 -30.96625 -30.42795 -29.17129 -25.76185 -25.40753 -23.40949 -22.74571 -21.75416 -19.96548 -19.23101 -16.73284 -16.15545 -15.89349 -15.56671 -15.15611 -14.79753 -14.58147 -14.24193 -14.01428 -13.52455 -13.02075 -12.91473 -12.64994 -12.41905 -12.18195 -11.62028 -11.52996 -11.29980 -11.15632 -11.12226 -10.88386 -10.74389 -10.52586 -10.39705 -10.21913 -10.10099 -9.98511 -9.43033 -9.16108 -8.68317 -8.52312 -7.34738 -6.85763 -6.18792 -4.26769 2.70262 3.19824 3.29146 3.32083 3.56606 3.94749 4.27186 4.61346 4.92776 5.02351 5.07004 5.13910 5.19592 5.32781 5.48191 5.50926 5.55470 5.69609 5.72092 5.76494 5.87477 6.00873 6.06629 6.11595 6.17250 6.29162 6.39065 6.45993 6.60413 6.60768 6.64741 6.84383 7.17760 7.25977 7.48170 7.61237 7.84423 8.09712 8.38674 8.80861 9.40139 10.86651 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.007209 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.007245 B = 3882.899037 C = 5308.782177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.221 3.779 10 H 0.014 0.986 11 C -0.035 4.035 12 S -0.343 6.343 13 C -0.064 4.064 14 C 0.048 3.952 15 N -0.544 5.544 16 C 0.080 3.920 17 C -0.096 4.096 18 C -0.150 4.150 19 C 0.064 3.936 20 O -0.388 6.388 21 C 0.059 3.941 22 C -0.138 4.138 23 H 0.264 0.736 24 H 0.132 0.868 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.935 -10.148 1.746 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.114 3.886 10 H 0.032 0.968 11 C -0.183 4.183 12 S -0.116 6.116 13 C -0.213 4.213 14 C -0.082 4.082 15 N -0.270 5.270 16 C -0.048 4.048 17 C -0.114 4.114 18 C -0.188 4.188 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.018 4.018 22 C -0.176 4.176 23 H 0.075 0.925 24 H 0.150 0.850 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.005 -10.220 1.088 12.437 hybrid contribution 0.835 1.181 0.950 1.731 sum 7.840 -9.038 2.038 12.137 Atomic orbital electron populations 1.69836 1.05961 1.26991 1.49763 1.24996 0.94927 0.99481 0.94635 0.86413 0.80051 0.83154 0.77712 1.19608 1.20831 1.20950 1.21323 0.93496 0.89275 1.51250 0.91024 1.19325 0.89079 0.87723 0.92520 0.96840 1.23973 1.00179 0.92247 1.01871 1.86575 1.20425 1.08809 1.95781 1.23288 0.98060 0.98620 1.01333 1.22280 0.96808 0.93717 0.95396 1.61268 1.11938 1.02123 1.51633 1.21945 0.91909 0.96594 0.94318 1.21449 0.95557 0.99224 0.95200 1.22203 0.97040 0.99343 1.00254 1.22533 0.98109 0.96675 0.84001 1.87889 1.33348 1.90916 1.18567 1.22658 0.89434 0.96636 0.93043 1.22094 0.99080 0.98800 0.97617 0.92545 0.85011 0.91852 0.89373 0.90248 0.90727 0.94807 0.95554 0.89379 0.91511 0.90835 0.91145 0.93669 0.89338 0.93799 0.89324 0.89863 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.19 11.28 55.43 0.63 -23.57 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.10 7.94 -34.44 -0.27 -13.37 16 8 H 0.07 1.80 5.53 -52.49 -0.29 1.51 16 9 C 0.22 5.29 1.89 -68.97 -0.13 5.16 16 10 H 0.01 0.38 7.92 -51.93 -0.41 -0.03 16 11 C -0.03 -0.82 5.75 37.28 0.21 -0.61 16 12 S -0.34 -7.16 22.40 -107.50 -2.41 -9.57 16 13 C -0.06 -1.09 6.69 37.29 0.25 -0.84 16 14 C 0.05 0.83 4.82 -3.93 -0.02 0.81 16 15 N -0.54 -10.76 3.78 -228.44 -0.86 -11.62 16 16 C 0.08 1.44 3.89 -3.82 -0.01 1.43 16 17 C -0.10 -1.36 1.77 -90.43 -0.16 -1.52 16 18 C -0.15 -1.89 5.42 -26.59 -0.14 -2.03 16 19 C 0.06 0.73 6.84 37.20 0.25 0.98 16 20 O -0.39 -5.23 10.77 -35.23 -0.38 -5.61 16 21 C 0.06 0.71 6.84 37.20 0.25 0.97 16 22 C -0.14 -1.91 5.11 -26.59 -0.14 -2.05 16 23 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.13 3.48 6.00 -51.93 -0.31 3.17 16 25 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.07 1.10 5.04 -51.93 -0.26 0.84 16 29 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.75 5.84 -51.93 -0.30 1.45 16 32 H 0.07 0.91 5.96 -51.93 -0.31 0.60 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.21 7.31 -51.92 -0.38 0.83 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -26.96 310.69 -9.83 -36.79 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.46 Total: 3.09 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 0.00 Total: -9.53 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.24 Total: -35.19 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.38 Total: -5.61 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -2.41 Total: -9.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.96 -9.83 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.692 kcal (2) G-P(sol) polarization free energy of solvation -26.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds