Wall clock time and date at job start Mon Mar 30 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47399 * 300.00342 * 3 2 1 6 6 H 1.48503 * 109.47105 * 60.00300 * 3 2 1 7 7 C 1.37881 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00000 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.40448 * 299.84494 * 9 7 2 11 11 C 1.53244 * 109.34234 * 59.64743 * 9 7 2 12 12 S 1.81900 * 108.50785 * 182.07930 * 11 9 7 13 13 C 1.81900 * 101.91335 * 308.69685 * 12 11 9 14 14 C 1.53249 * 108.50572 * 51.30238 * 13 12 11 15 15 N 1.46466 * 109.86115 * 297.99485 * 14 13 12 16 16 C 1.46897 * 111.00095 * 197.76309 * 15 14 13 17 17 C 1.53002 * 109.46759 * 50.13791 * 16 15 14 18 18 C 1.53177 * 109.54236 * 179.56633 * 17 16 15 19 19 C 1.53090 * 109.16363 * 183.15261 * 18 17 16 20 20 O 1.42910 * 109.41314 * 57.60927 * 19 18 17 21 21 C 1.42899 * 114.10012 * 298.84243 * 20 19 18 22 22 C 1.53086 * 109.41335 * 61.15457 * 21 20 19 23 23 H 0.97004 * 119.99729 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.63062 * 301.78842 * 11 9 7 25 25 H 1.09003 * 109.63426 * 62.17804 * 11 9 7 26 26 H 1.08999 * 109.62663 * 171.00698 * 13 12 11 27 27 H 1.08993 * 109.62895 * 291.59502 * 13 12 11 28 28 H 1.08994 * 109.40195 * 177.87594 * 14 13 12 29 29 H 1.09001 * 109.40301 * 58.11843 * 14 13 12 30 30 H 1.08997 * 109.47670 * 290.13866 * 16 15 14 31 31 H 1.09000 * 109.47054 * 170.13335 * 16 15 14 32 32 H 1.09001 * 109.54443 * 299.83604 * 17 16 15 33 33 H 1.09004 * 109.52248 * 303.05901 * 18 17 16 34 34 H 1.08997 * 109.52363 * 63.24716 * 18 17 16 35 35 H 1.09001 * 109.48389 * 297.63023 * 19 18 17 36 36 H 1.08998 * 109.48649 * 177.59379 * 19 18 17 37 37 H 1.09004 * 109.47744 * 301.17910 * 21 20 19 38 38 H 1.08999 * 109.48858 * 181.14976 * 21 20 19 39 39 H 1.09008 * 109.52370 * 182.48123 * 22 21 20 40 40 H 1.09003 * 109.51932 * 62.30158 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6271 -2.5571 0.8914 11 6 0.3639 -2.5731 -1.2480 12 16 -0.5804 -4.1269 -1.1938 13 6 0.7312 -5.3534 -0.9039 14 6 1.5677 -4.8967 0.2962 15 7 2.2040 -3.6114 -0.0011 16 6 3.3183 -3.3502 0.9198 17 6 4.2394 -4.5711 0.9650 18 6 5.4079 -4.2965 1.9166 19 6 6.3649 -5.4912 1.8952 20 8 6.8167 -5.7140 0.5578 21 6 5.7720 -6.0223 -0.3672 22 6 4.7912 -4.8489 -0.4366 23 1 -0.4850 0.8401 0.0004 24 1 -0.3233 -1.7271 -1.2593 25 1 0.9868 -2.5508 -2.1422 26 1 0.2839 -6.3242 -0.6904 27 1 1.3663 -5.4259 -1.7867 28 1 2.3357 -5.6410 0.5065 29 1 0.9218 -4.7882 1.1675 30 1 2.9266 -3.1535 1.9177 31 1 3.8808 -2.4834 0.5728 32 1 3.6787 -5.4381 1.3146 33 1 5.9373 -3.3999 1.5940 34 1 5.0279 -4.1522 2.9279 35 1 5.8459 -6.3792 2.2562 36 1 7.2203 -5.2834 2.5380 37 1 5.2453 -6.9172 -0.0357 38 1 6.2002 -6.1972 -1.3542 39 1 3.9701 -5.0997 -1.1083 40 1 5.3082 -3.9635 -0.8067 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260198859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:12 Heat of formation + Delta-G solvation = -61.419112 kcal Electronic energy + Delta-G solvation = -20093.287101 eV Core-core repulsion = 17226.216908 eV Total energy + Delta-G solvation = -2867.070193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64804 -38.99016 -35.63541 -34.52952 -32.14538 -31.88075 -30.78296 -27.42246 -27.02128 -24.48278 -24.15078 -23.14121 -21.52387 -20.55735 -18.59333 -17.59061 -16.95144 -16.85545 -16.73215 -16.37200 -15.74266 -15.59263 -15.49013 -15.00403 -14.63658 -14.38719 -14.13261 -13.98433 -13.30415 -13.05176 -12.94348 -12.90265 -12.75590 -12.64914 -12.34395 -12.19192 -12.15162 -12.11590 -11.77813 -11.39758 -11.10253 -10.86793 -10.65753 -10.37712 -10.29738 -9.03047 -8.56599 -8.19120 -6.34230 1.09565 1.37976 1.41079 1.51588 1.83169 2.36848 3.02935 3.07515 3.18993 3.77790 3.93801 3.98943 4.08479 4.17886 4.28759 4.38284 4.40627 4.48429 4.56634 4.59000 4.66894 4.72881 4.83623 4.86047 4.86515 4.94565 4.97697 5.05322 5.07642 5.23223 5.29615 5.40188 5.52975 5.55669 5.65401 5.99170 6.26565 6.34815 6.65227 6.81757 7.36604 8.85236 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.007209 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.007245 B = 3882.899037 C = 5308.782177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.231 3.769 10 H -0.030 1.030 11 C -0.028 4.028 12 S -0.359 6.359 13 C -0.052 4.052 14 C 0.048 3.952 15 N -0.543 5.543 16 C 0.084 3.916 17 C -0.086 4.086 18 C -0.148 4.148 19 C 0.064 3.936 20 O -0.406 6.406 21 C 0.062 3.938 22 C -0.134 4.134 23 H 0.264 0.736 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.124 0.876 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.018 0.982 30 H 0.009 0.991 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 -12.240 1.949 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.090 0.910 9 C 0.122 3.878 10 H -0.012 1.012 11 C -0.177 4.177 12 S -0.133 6.133 13 C -0.200 4.200 14 C -0.081 4.081 15 N -0.268 5.268 16 C -0.043 4.043 17 C -0.104 4.104 18 C -0.186 4.186 19 C -0.012 4.012 20 O -0.325 6.325 21 C -0.014 4.014 22 C -0.172 4.172 23 H 0.074 0.926 24 H 0.118 0.882 25 H 0.074 0.926 26 H 0.142 0.858 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.036 0.964 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.627 -12.328 1.293 15.102 hybrid contribution 0.326 1.765 0.914 2.014 sum 8.952 -10.563 2.206 14.021 Atomic orbital electron populations 1.69978 1.07302 1.27591 1.50725 1.25749 0.95605 1.02607 0.94416 0.85466 0.79106 0.79324 0.77556 1.18891 1.20630 1.20774 1.21618 0.93672 0.90371 1.50759 0.91040 1.19013 0.89101 0.88952 0.90713 1.01244 1.23568 0.99631 0.93295 1.01210 1.86538 1.22332 1.08479 1.95917 1.23462 0.96640 0.98281 1.01591 1.22382 0.97573 0.93105 0.95037 1.61239 1.11375 1.01959 1.52245 1.21893 0.91713 0.98041 0.92674 1.21362 0.95389 0.97414 0.96265 1.22191 0.96589 0.99699 1.00163 1.22653 0.98566 0.96458 0.83542 1.87880 1.34146 1.90968 1.19489 1.22700 0.88905 0.96085 0.93726 1.22032 0.99257 0.99013 0.96850 0.92645 0.88218 0.92623 0.85759 0.89008 0.87018 0.96351 0.97304 0.91757 0.90017 0.92230 0.90236 0.91923 0.87662 0.91893 0.88139 0.90355 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.91 11.28 21.45 0.24 -51.67 16 2 C 0.02 0.87 5.30 84.66 0.45 1.31 16 3 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.52 -27.63 7.94 25.60 0.20 -27.43 16 8 H 0.07 3.70 5.53 -2.91 -0.02 3.68 16 9 C 0.23 11.42 1.89 44.33 0.08 11.50 16 10 H -0.03 -1.71 7.92 -2.39 -0.02 -1.73 16 11 C -0.03 -1.39 5.75 72.06 0.41 -0.97 16 12 S -0.36 -14.93 22.40 -56.49 -1.27 -16.20 16 13 C -0.05 -1.61 6.69 72.07 0.48 -1.13 16 14 C 0.05 1.58 4.82 86.47 0.42 1.99 16 15 N -0.54 -21.42 3.78 -876.64 -3.32 -24.73 16 16 C 0.08 3.05 3.89 86.30 0.34 3.39 16 17 C -0.09 -2.26 1.77 -10.67 -0.02 -2.28 16 18 C -0.15 -3.44 5.42 30.68 0.17 -3.27 16 19 C 0.06 1.26 6.84 72.01 0.49 1.75 16 20 O -0.41 -9.69 10.77 -148.98 -1.60 -11.30 16 21 C 0.06 1.30 6.84 72.01 0.49 1.79 16 22 C -0.13 -3.42 5.11 30.68 0.16 -3.26 16 23 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 24 H 0.10 5.54 6.00 -2.39 -0.01 5.53 16 25 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.11 2.87 5.04 -2.39 -0.01 2.86 16 29 H 0.02 0.67 7.92 -2.39 -0.02 0.65 16 30 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 2.62 5.84 -2.39 -0.01 2.60 16 32 H 0.08 1.94 5.96 -2.39 -0.01 1.92 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.08 2.08 7.31 -2.38 -0.02 2.06 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -60.38 310.69 0.77 -59.61 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 1.01 Total: 16.27 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 3.67 Total: -16.61 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -3.07 Total: -76.40 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.60 Total: -11.30 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -14.93 SS G_CDS: -1.27 Total: -16.20 kcal Total: -60.38 0.77 -59.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.805 kcal (2) G-P(sol) polarization free energy of solvation -60.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds