Wall clock time and date at job start Mon Mar 30 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99715 * 2 1 4 4 H 1.48507 * 109.46971 * 270.00089 * 3 2 1 5 5 H 1.48496 * 109.47401 * 30.00194 * 3 2 1 6 6 H 1.48501 * 109.46933 * 150.00572 * 3 2 1 7 7 C 1.37870 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99811 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.54319 * 300.11407 * 9 7 2 11 11 C 1.53104 * 109.50702 * 60.22382 * 9 7 2 12 12 O 1.43013 * 109.26083 * 176.78359 * 11 9 7 13 13 C 1.43013 * 113.73645 * 301.32523 * 12 11 9 14 14 C 1.53101 * 109.25688 * 58.67203 * 13 12 11 15 15 N 1.47009 * 109.50789 * 180.02562 * 9 7 2 16 16 C 1.46898 * 111.00160 * 57.67378 * 15 9 7 17 17 C 1.53003 * 109.47575 * 199.34373 * 16 15 9 18 18 H 1.08997 * 109.38504 * 305.12156 * 17 16 15 19 19 C 1.52585 * 109.31024 * 64.87277 * 17 16 15 20 20 C 1.52574 * 110.72695 * 190.77615 * 19 17 16 21 21 C 1.53106 * 109.95538 * 289.32448 * 20 19 17 22 22 S 1.82102 * 108.89320 * 63.01565 * 21 20 19 23 23 C 1.53095 * 109.38882 * 185.31818 * 17 16 15 24 24 H 0.97004 * 119.99698 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.50727 * 56.84164 * 11 9 7 26 26 H 1.09006 * 109.50030 * 296.71960 * 11 9 7 27 27 H 1.08998 * 109.50978 * 298.73998 * 13 12 11 28 28 H 1.09000 * 109.54663 * 178.62449 * 13 12 11 29 29 H 1.09004 * 109.50963 * 183.21638 * 14 13 12 30 30 H 1.09000 * 109.54526 * 63.11104 * 14 13 12 31 31 H 1.09001 * 109.47082 * 79.34318 * 16 15 9 32 32 H 1.09005 * 109.47166 * 319.34230 * 16 15 9 33 33 H 1.09001 * 109.22169 * 311.09890 * 19 17 16 34 34 H 1.09004 * 109.22546 * 70.49435 * 19 17 16 35 35 H 1.08997 * 109.38914 * 49.47050 * 20 19 17 36 36 H 1.09002 * 109.39048 * 169.17617 * 20 19 17 37 37 H 1.09000 * 109.57092 * 182.83146 * 21 20 19 38 38 H 1.08995 * 109.57784 * 303.09016 * 21 20 19 39 39 H 1.08997 * 109.57902 * 296.73330 * 23 17 16 40 40 H 1.09003 * 109.57540 * 56.98836 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6228 -2.5574 0.8882 11 6 0.3743 -2.5832 -1.2528 12 8 -0.2805 -3.8542 -1.2858 13 6 0.6196 -4.9656 -1.2879 14 6 1.4988 -4.9057 -0.0360 15 7 2.2057 -3.6171 -0.0005 16 6 3.1052 -3.5413 1.1583 17 6 4.3514 -4.3885 0.8931 18 1 4.0505 -5.4048 0.6391 19 6 5.1330 -3.7857 -0.2706 20 6 6.2290 -4.7394 -0.7365 21 6 7.3403 -4.8115 0.3142 22 16 6.6528 -5.4999 1.8535 23 6 5.2244 -4.4159 2.1504 24 1 -0.4850 0.8401 0.0004 25 1 0.9964 -2.4710 -2.1409 26 1 -0.3725 -1.7895 -1.2282 27 1 1.2488 -4.9228 -2.1769 28 1 0.0508 -5.8955 -1.2889 29 1 2.2248 -5.7184 -0.0617 30 1 0.8752 -5.0029 0.8527 31 1 2.5912 -3.9181 2.0426 32 1 3.3991 -2.5046 1.3230 33 1 4.4510 -3.5909 -1.0983 34 1 5.5864 -2.8475 0.0493 35 1 5.8056 -5.7329 -0.8840 36 1 6.6442 -4.3811 -1.6784 37 1 8.1429 -5.4547 -0.0467 38 1 7.7305 -3.8113 0.5023 39 1 5.5717 -3.4077 2.3760 40 1 4.6438 -4.7985 2.9899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260199442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:40 Heat of formation + Delta-G solvation = -54.944103 kcal Electronic energy + Delta-G solvation = -20069.722858 eV Core-core repulsion = 17202.933443 eV Total energy + Delta-G solvation = -2866.789415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.86295 -37.08335 -34.59241 -33.10751 -31.66686 -29.87884 -27.39661 -26.79088 -25.33457 -23.63316 -22.31966 -21.63798 -19.79281 -19.20700 -16.79151 -16.40905 -15.64852 -15.11391 -14.87929 -14.68487 -14.56695 -13.90982 -13.80290 -13.60490 -13.40522 -13.15486 -13.03267 -12.27494 -12.21700 -11.93914 -11.65947 -11.16098 -11.09353 -11.01189 -10.84728 -10.73101 -10.57732 -10.36869 -10.12596 -10.04455 -9.78722 -9.41035 -9.12916 -8.73933 -8.40873 -7.63631 -7.32800 -6.17324 -4.21626 1.85968 2.57667 3.22228 3.29695 3.31372 4.28228 4.66536 4.80829 4.89135 4.91981 5.02694 5.17144 5.26422 5.33844 5.39113 5.58521 5.67744 5.77804 5.79897 5.82841 5.87940 5.95152 6.06873 6.15150 6.28978 6.33231 6.41304 6.47078 6.64925 6.69487 6.76624 6.89000 7.25932 7.47866 7.64056 7.84004 8.12593 8.16236 8.47933 8.85153 9.43811 10.90677 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.006541 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.627743 B = 4279.740230 C = 5365.681708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.189 3.811 10 H 0.007 0.993 11 C 0.070 3.930 12 O -0.404 6.404 13 C 0.068 3.932 14 C 0.018 3.982 15 N -0.528 5.528 16 C 0.066 3.934 17 C -0.079 4.079 18 H 0.075 0.925 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.075 4.075 22 S -0.288 6.288 23 C -0.070 4.070 24 H 0.265 0.735 25 H 0.033 0.967 26 H 0.122 0.878 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.022 0.978 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.427 -8.617 0.106 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.082 3.918 10 H 0.025 0.975 11 C -0.007 4.007 12 O -0.324 6.324 13 C -0.010 4.010 14 C -0.111 4.111 15 N -0.254 5.254 16 C -0.064 4.064 17 C -0.100 4.100 18 H 0.093 0.907 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.224 4.224 22 S -0.061 6.061 23 C -0.218 4.218 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.140 0.860 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.744 -9.331 0.305 13.495 hybrid contribution -0.132 1.872 0.152 1.882 sum 9.612 -7.460 0.456 12.176 Atomic orbital electron populations 1.69848 1.05920 1.27043 1.50216 1.24982 0.94932 0.99366 0.94851 0.86478 0.79677 0.82953 0.78228 1.20524 1.21187 1.19882 1.21037 0.93350 0.89215 1.51054 0.91463 1.19833 0.89544 0.88106 0.94293 0.97499 1.23128 0.97498 0.82766 0.97263 1.87912 1.33871 1.15568 1.95015 1.22416 0.91991 0.90184 0.96374 1.22737 0.96495 0.93851 0.97976 1.62179 1.20735 1.01938 1.40504 1.22059 0.91953 1.01183 0.91164 1.21318 0.95013 1.00647 0.92997 0.90717 1.21471 0.96879 0.97410 0.99615 1.21749 0.95483 1.01335 0.97381 1.23477 1.00467 1.03637 0.94779 1.86730 1.36420 1.48911 1.34046 1.23505 0.95753 1.00956 1.01611 0.92543 0.94875 0.86047 0.93596 0.90425 0.91468 0.95353 0.96016 0.88909 0.88831 0.92418 0.91043 0.91212 0.88515 0.90099 0.89832 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 11.37 55.43 0.63 -23.84 16 2 C 0.06 1.60 5.31 -17.82 -0.09 1.50 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.51 -13.04 7.66 -34.44 -0.26 -13.31 16 8 H 0.07 1.70 6.71 -52.49 -0.35 1.35 16 9 C 0.19 4.60 1.97 -68.75 -0.14 4.46 16 10 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 11 C 0.07 1.69 6.02 37.21 0.22 1.92 16 12 O -0.40 -9.12 10.83 -35.23 -0.38 -9.50 16 13 C 0.07 1.23 7.01 37.21 0.26 1.50 16 14 C 0.02 0.33 5.47 -3.71 -0.02 0.31 16 15 N -0.53 -10.64 3.72 -227.72 -0.85 -11.49 16 16 C 0.07 1.20 4.17 -3.82 -0.02 1.18 16 17 C -0.08 -1.16 2.10 -90.78 -0.19 -1.35 16 18 H 0.07 1.11 6.65 -51.93 -0.35 0.77 16 19 C -0.12 -1.67 4.90 -27.16 -0.13 -1.80 16 20 C -0.12 -1.42 5.75 -26.89 -0.15 -1.58 16 21 C -0.08 -0.84 6.46 37.21 0.24 -0.60 16 22 S -0.29 -3.76 22.36 -107.50 -2.40 -6.16 16 23 C -0.07 -0.93 5.72 37.21 0.21 -0.71 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.12 3.25 6.19 -51.93 -0.32 2.93 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.05 6.73 -51.93 -0.35 0.70 16 30 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.02 0.39 7.99 -51.93 -0.41 -0.02 16 32 H 0.09 1.86 5.93 -51.93 -0.31 1.55 16 33 H 0.09 1.56 7.44 -51.93 -0.39 1.17 16 34 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -26.92 315.16 -10.02 -36.94 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.68 Total: 2.42 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.07 Total: -8.49 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.22 Total: -35.33 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.38 Total: -9.50 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -2.40 Total: -6.16 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.92 -10.02 -36.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260199442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.007 kcal (2) G-P(sol) polarization free energy of solvation -26.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds