Wall clock time and date at job start Mon Mar 30 2020 05:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99715 * 2 1 4 4 H 1.48507 * 109.46971 * 270.00089 * 3 2 1 5 5 H 1.48496 * 109.47401 * 30.00194 * 3 2 1 6 6 H 1.48501 * 109.46933 * 150.00572 * 3 2 1 7 7 C 1.37870 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99811 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.54319 * 300.11407 * 9 7 2 11 11 C 1.53104 * 109.50702 * 60.22382 * 9 7 2 12 12 O 1.43013 * 109.26083 * 176.78359 * 11 9 7 13 13 C 1.43013 * 113.73645 * 301.32523 * 12 11 9 14 14 C 1.53101 * 109.25688 * 58.67203 * 13 12 11 15 15 N 1.47009 * 109.50789 * 180.02562 * 9 7 2 16 16 C 1.46898 * 111.00160 * 57.67378 * 15 9 7 17 17 C 1.53003 * 109.47575 * 199.34373 * 16 15 9 18 18 H 1.08997 * 109.38504 * 305.12156 * 17 16 15 19 19 C 1.52585 * 109.31024 * 64.87277 * 17 16 15 20 20 C 1.52574 * 110.72695 * 190.77615 * 19 17 16 21 21 C 1.53106 * 109.95538 * 289.32448 * 20 19 17 22 22 S 1.82102 * 108.89320 * 63.01565 * 21 20 19 23 23 C 1.53095 * 109.38882 * 185.31818 * 17 16 15 24 24 H 0.97004 * 119.99698 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.50727 * 56.84164 * 11 9 7 26 26 H 1.09006 * 109.50030 * 296.71960 * 11 9 7 27 27 H 1.08998 * 109.50978 * 298.73998 * 13 12 11 28 28 H 1.09000 * 109.54663 * 178.62449 * 13 12 11 29 29 H 1.09004 * 109.50963 * 183.21638 * 14 13 12 30 30 H 1.09000 * 109.54526 * 63.11104 * 14 13 12 31 31 H 1.09001 * 109.47082 * 79.34318 * 16 15 9 32 32 H 1.09005 * 109.47166 * 319.34230 * 16 15 9 33 33 H 1.09001 * 109.22169 * 311.09890 * 19 17 16 34 34 H 1.09004 * 109.22546 * 70.49435 * 19 17 16 35 35 H 1.08997 * 109.38914 * 49.47050 * 20 19 17 36 36 H 1.09002 * 109.39048 * 169.17617 * 20 19 17 37 37 H 1.09000 * 109.57092 * 182.83146 * 21 20 19 38 38 H 1.08995 * 109.57784 * 303.09016 * 21 20 19 39 39 H 1.08997 * 109.57902 * 296.73330 * 23 17 16 40 40 H 1.09003 * 109.57540 * 56.98836 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6228 -2.5574 0.8882 11 6 0.3743 -2.5832 -1.2528 12 8 -0.2805 -3.8542 -1.2858 13 6 0.6196 -4.9656 -1.2879 14 6 1.4988 -4.9057 -0.0360 15 7 2.2057 -3.6171 -0.0005 16 6 3.1052 -3.5413 1.1583 17 6 4.3514 -4.3885 0.8931 18 1 4.0505 -5.4048 0.6391 19 6 5.1330 -3.7857 -0.2706 20 6 6.2290 -4.7394 -0.7365 21 6 7.3403 -4.8115 0.3142 22 16 6.6528 -5.4999 1.8535 23 6 5.2244 -4.4159 2.1504 24 1 -0.4850 0.8401 0.0004 25 1 0.9964 -2.4710 -2.1409 26 1 -0.3725 -1.7895 -1.2282 27 1 1.2488 -4.9228 -2.1769 28 1 0.0508 -5.8955 -1.2889 29 1 2.2248 -5.7184 -0.0617 30 1 0.8752 -5.0029 0.8527 31 1 2.5912 -3.9181 2.0426 32 1 3.3991 -2.5046 1.3230 33 1 4.4510 -3.5909 -1.0983 34 1 5.5864 -2.8475 0.0493 35 1 5.8056 -5.7329 -0.8840 36 1 6.6442 -4.3811 -1.6784 37 1 8.1429 -5.4547 -0.0467 38 1 7.7305 -3.8113 0.5023 39 1 5.5717 -3.4077 2.3760 40 1 4.6438 -4.7985 2.9899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260199442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:39 Heat of formation + Delta-G solvation = -70.404266 kcal Electronic energy + Delta-G solvation = -20070.393261 eV Core-core repulsion = 17202.933443 eV Total energy + Delta-G solvation = -2867.459818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.49858 -38.42506 -36.16436 -34.95568 -32.86455 -31.66019 -28.87911 -27.94580 -27.22157 -25.12707 -24.03033 -22.74564 -21.23585 -20.77158 -18.61706 -17.70564 -17.26131 -16.79671 -16.30411 -16.12257 -15.93211 -15.45952 -15.34795 -15.12196 -14.83177 -14.29311 -14.25139 -13.95625 -13.57911 -13.23406 -13.11113 -12.84944 -12.63793 -12.48767 -12.39627 -12.20635 -12.04146 -11.95915 -11.74672 -11.31900 -11.21392 -10.96960 -10.72715 -10.56613 -10.21743 -9.03332 -8.65923 -8.18830 -6.29920 0.86667 1.41487 1.42668 1.52205 1.57974 2.38185 3.06402 3.11292 3.33670 3.71980 3.88818 3.98149 4.09372 4.18029 4.26013 4.34217 4.37540 4.45171 4.52050 4.62652 4.64834 4.67676 4.75862 4.85032 4.91901 4.92974 4.96915 4.99223 5.16858 5.21877 5.32998 5.45079 5.52814 5.55654 5.65082 5.99575 6.26017 6.46414 6.64486 6.84757 7.39401 8.88895 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.006541 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.627743 B = 4279.740230 C = 5365.681708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.197 3.803 10 H -0.038 1.038 11 C 0.083 3.917 12 O -0.421 6.421 13 C 0.061 3.939 14 C 0.019 3.981 15 N -0.527 5.527 16 C 0.070 3.930 17 C -0.065 4.065 18 H 0.079 0.921 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.070 4.070 22 S -0.299 6.299 23 C -0.066 4.066 24 H 0.265 0.735 25 H 0.029 0.971 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.526 -9.774 -0.367 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.089 3.911 10 H -0.021 1.021 11 C 0.006 3.994 12 O -0.341 6.341 13 C -0.016 4.016 14 C -0.110 4.110 15 N -0.252 5.252 16 C -0.060 4.060 17 C -0.085 4.085 18 H 0.097 0.903 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.218 4.218 22 S -0.072 6.072 23 C -0.215 4.215 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.862 -10.514 -0.166 15.852 hybrid contribution -0.788 2.142 0.304 2.303 sum 11.074 -8.372 0.137 13.883 Atomic orbital electron populations 1.69991 1.07346 1.27712 1.51129 1.25762 0.95630 1.02624 0.94552 0.85497 0.78613 0.78890 0.78332 1.19987 1.21197 1.19021 1.21276 0.93459 0.90046 1.50592 0.91363 1.19567 0.89647 0.89573 0.92312 1.02079 1.22727 0.96398 0.83317 0.96927 1.87866 1.35276 1.15850 1.95117 1.22767 0.92243 0.89854 0.96706 1.22839 0.97094 0.93524 0.97531 1.62180 1.19851 1.01749 1.41408 1.22042 0.92997 1.00579 0.90382 1.21168 0.93538 0.99803 0.94003 0.90264 1.21400 0.97243 0.97931 0.98489 1.21671 0.94718 1.00588 0.98171 1.23551 1.00578 1.04326 0.93295 1.86810 1.35931 1.48819 1.35614 1.23400 0.95976 1.01219 1.00923 0.92618 0.95218 0.89044 0.92582 0.86770 0.88087 0.96476 0.96455 0.91326 0.91140 0.93194 0.90800 0.89618 0.86327 0.89631 0.90003 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 11.37 21.45 0.24 -52.01 16 2 C 0.01 0.72 5.31 84.65 0.45 1.17 16 3 Si 0.96 42.21 29.54 68.60 2.03 44.24 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.52 -27.10 7.66 25.60 0.20 -26.90 16 8 H 0.07 3.50 6.71 -2.91 -0.02 3.48 16 9 C 0.20 9.89 1.97 44.18 0.09 9.98 16 10 H -0.04 -2.23 8.14 -2.39 -0.02 -2.25 16 11 C 0.08 4.16 6.02 72.02 0.43 4.60 16 12 O -0.42 -19.09 10.83 -148.98 -1.61 -20.71 16 13 C 0.06 2.11 7.01 72.02 0.50 2.61 16 14 C 0.02 0.64 5.47 86.32 0.47 1.12 16 15 N -0.53 -21.28 3.72 -874.37 -3.25 -24.53 16 16 C 0.07 2.53 4.17 86.30 0.36 2.89 16 17 C -0.06 -1.81 2.10 -10.90 -0.02 -1.83 16 18 H 0.08 2.17 6.65 -2.39 -0.02 2.15 16 19 C -0.11 -3.07 4.90 30.31 0.15 -2.93 16 20 C -0.11 -2.33 5.75 30.49 0.18 -2.15 16 21 C -0.07 -1.33 6.46 72.02 0.47 -0.87 16 22 S -0.30 -7.05 22.36 -56.49 -1.26 -8.32 16 23 C -0.07 -1.67 5.72 72.01 0.41 -1.26 16 24 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.09 5.13 6.19 -2.38 -0.01 5.11 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.10 2.85 6.73 -2.39 -0.02 2.83 16 30 H 0.02 0.64 8.13 -2.39 -0.02 0.62 16 31 H 0.02 0.63 7.99 -2.39 -0.02 0.61 16 32 H 0.07 2.81 5.93 -2.38 -0.01 2.80 16 33 H 0.07 2.27 7.44 -2.39 -0.02 2.25 16 34 H 0.05 1.42 8.08 -2.38 -0.02 1.40 16 35 H 0.07 1.53 8.06 -2.39 -0.02 1.51 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -59.25 315.16 0.83 -58.43 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.00 Total: 16.47 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 3.68 Total: -13.58 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -3.00 Total: -76.53 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -1.61 Total: -20.71 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: -7.05 SS G_CDS: -1.26 Total: -8.32 kcal Total: -59.25 0.83 -58.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260199442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.976 kcal (2) G-P(sol) polarization free energy of solvation -59.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds