Wall clock time and date at job start Mon Mar 30 2020 05:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99890 * 2 1 4 4 H 1.48491 * 109.47594 * 270.00304 * 3 2 1 5 5 H 1.48502 * 109.47093 * 30.00614 * 3 2 1 6 6 H 1.48506 * 109.47011 * 150.00273 * 3 2 1 7 7 C 1.37873 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99881 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00049 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.50632 * 59.90934 * 9 7 2 11 11 C 1.53094 * 109.50242 * 299.77706 * 9 7 2 12 12 O 1.43020 * 109.29099 * 183.23808 * 11 9 7 13 13 C 1.43010 * 113.73720 * 58.60186 * 12 11 9 14 14 C 1.53101 * 109.29497 * 301.39971 * 13 12 11 15 15 N 1.47009 * 109.25709 * 56.82473 * 14 13 12 16 16 C 1.46901 * 110.99935 * 177.60680 * 15 14 13 17 17 C 1.52997 * 109.47562 * 294.19762 * 16 15 14 18 18 H 1.09002 * 109.38792 * 56.43605 * 17 16 15 19 19 C 1.52580 * 109.39104 * 176.13993 * 17 16 15 20 20 C 1.52581 * 110.72330 * 190.82539 * 19 17 16 21 21 C 1.53091 * 109.95951 * 289.32245 * 20 19 17 22 22 S 1.81752 * 108.83937 * 63.02509 * 21 20 19 23 23 C 1.53097 * 109.38970 * 296.63994 * 17 16 15 24 24 H 0.97003 * 119.99876 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.51339 * 303.15002 * 11 9 7 26 26 H 1.08996 * 109.50875 * 63.23870 * 11 9 7 27 27 H 1.08998 * 109.51068 * 181.44185 * 13 12 11 28 28 H 1.09009 * 109.50921 * 61.35418 * 13 12 11 29 29 H 1.09004 * 109.50788 * 176.75992 * 14 13 12 30 30 H 1.09003 * 109.50408 * 296.89070 * 14 13 12 31 31 H 1.09000 * 109.46765 * 54.20030 * 16 15 14 32 32 H 1.09001 * 109.47078 * 174.19934 * 16 15 14 33 33 H 1.09002 * 109.22595 * 311.14488 * 19 17 16 34 34 H 1.08993 * 109.22433 * 70.50625 * 19 17 16 35 35 H 1.09002 * 109.39070 * 169.17611 * 20 19 17 36 36 H 1.09001 * 109.30993 * 49.42523 * 20 19 17 37 37 H 1.09004 * 109.57802 * 303.22483 * 21 20 19 38 38 H 1.08994 * 109.58137 * 182.83042 * 21 20 19 39 39 H 1.09004 * 109.57441 * 296.62784 * 23 17 16 40 40 H 1.08998 * 109.57986 * 57.01521 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8752 -0.6795 0.8895 11 6 4.0232 -0.4766 -1.2518 12 8 5.4514 -0.5450 -1.2852 13 6 5.9638 -1.8801 -1.2864 14 6 5.4718 -2.6120 -0.0348 15 7 4.0025 -2.5798 -0.0006 16 6 3.4865 -3.3217 1.1576 17 6 3.8198 -4.8067 1.0018 18 1 4.8964 -4.9251 0.8789 19 6 3.3685 -5.5608 2.2492 20 6 3.9182 -6.9841 2.2481 21 6 3.2142 -7.8154 1.1724 22 16 3.5833 -7.1001 -0.4572 23 6 3.1033 -5.3617 -0.2321 24 1 -0.4850 0.8401 -0.0004 25 1 3.6155 -0.9590 -2.1402 26 1 3.7087 0.5667 -1.2275 27 1 7.0534 -1.8518 -1.2867 28 1 5.6131 -2.4039 -2.1757 29 1 5.8127 -3.6470 -0.0607 30 1 5.8675 -2.1198 0.8537 31 1 3.9474 -2.9395 2.0685 32 1 2.4054 -3.1962 1.2172 33 1 3.7289 -5.0375 3.1349 34 1 2.2794 -5.5966 2.2725 35 1 3.7491 -7.4381 3.2245 36 1 4.9882 -6.9571 2.0420 37 1 2.1378 -7.7978 1.3435 38 1 3.5752 -8.8431 1.2104 39 1 2.0248 -5.2964 -0.0884 40 1 3.3919 -4.7863 -1.1117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260199505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:48 Heat of formation + Delta-G solvation = -44.710207 kcal Electronic energy + Delta-G solvation = -20071.026377 eV Core-core repulsion = 17204.680737 eV Total energy + Delta-G solvation = -2866.345640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.15885 -37.30067 -34.88902 -33.06954 -31.56257 -30.56095 -27.58258 -27.12039 -25.29740 -24.07820 -22.30327 -21.62168 -19.92323 -19.28518 -17.05948 -16.57978 -16.09137 -15.47150 -15.17787 -14.70850 -14.43196 -14.11654 -13.94252 -13.68398 -13.44940 -13.28540 -13.13791 -12.67935 -12.22868 -12.18403 -11.77870 -11.47367 -11.30517 -11.16802 -11.04261 -10.72761 -10.49993 -10.46238 -10.29030 -9.92160 -9.67559 -9.48348 -9.31836 -8.92960 -8.57511 -7.58736 -7.49593 -6.20931 -4.21509 1.95317 2.71929 3.17589 3.29511 3.32556 4.26212 4.41283 4.52637 4.69447 4.85239 4.98193 5.09433 5.10566 5.27825 5.42300 5.49029 5.56586 5.64788 5.67013 5.70658 5.81023 5.91362 5.96708 6.01521 6.07330 6.11712 6.21190 6.25776 6.33286 6.38703 6.41262 6.45359 6.77332 6.99397 7.26691 7.74566 7.82139 7.88874 8.49343 8.84146 9.39270 10.91010 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.006001 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.521956 B = 4664.687240 C = 5300.303796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.870 3.130 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.510 4.510 8 H 0.087 0.913 9 C 0.158 3.842 10 H 0.007 0.993 11 C 0.059 3.941 12 O -0.402 6.402 13 C 0.068 3.932 14 C 0.013 3.987 15 N -0.521 5.521 16 C 0.069 3.931 17 C -0.083 4.083 18 H 0.076 0.924 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.080 4.080 22 S -0.294 6.294 23 C -0.053 4.053 24 H 0.266 0.734 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 -11.154 3.036 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.548 4.548 8 H 0.104 0.896 9 C 0.051 3.949 10 H 0.025 0.975 11 C -0.017 4.017 12 O -0.321 6.321 13 C -0.009 4.009 14 C -0.116 4.116 15 N -0.245 5.245 16 C -0.061 4.061 17 C -0.104 4.104 18 H 0.094 0.906 19 C -0.164 4.164 20 C -0.157 4.157 21 C -0.228 4.228 22 S -0.067 6.067 23 C -0.201 4.201 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.848 -11.630 1.670 14.708 hybrid contribution -0.049 1.734 1.752 2.465 sum 8.799 -9.896 3.422 13.677 Atomic orbital electron populations 1.69859 1.06046 1.27149 1.49826 1.24910 0.94765 0.98705 0.94459 0.87113 0.80215 0.84145 0.78550 1.20044 1.21776 1.18795 1.20862 0.87514 0.94921 1.51525 0.89553 1.20268 0.96879 0.84573 0.93226 0.97538 1.23364 0.78206 1.00263 0.99903 1.87870 1.22910 1.26164 1.95163 1.22496 0.97714 0.83809 0.96889 1.22812 0.90667 1.00254 0.97870 1.62075 1.05412 1.15796 1.41253 1.22105 1.02767 0.90354 0.90877 1.21391 1.00287 0.95486 0.93233 0.90593 1.21562 1.01440 0.94882 0.98478 1.21693 1.00658 0.95327 0.98009 1.23389 1.03408 1.01635 0.94364 1.86787 1.87138 1.12391 1.20349 1.23475 1.02859 0.90770 1.02946 0.92349 0.92294 0.90523 0.89769 0.92905 0.90532 0.95123 0.95609 0.88423 0.91214 0.91530 0.91235 0.90912 0.90093 0.88459 0.89960 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 2 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 3 Si 0.87 21.13 24.35 -169.99 -4.14 16.99 16 4 H -0.27 -6.49 6.90 56.52 0.39 -6.10 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 7 C -0.51 -13.49 8.39 -34.44 -0.29 -13.78 16 8 H 0.09 2.45 6.81 -52.48 -0.36 2.09 16 9 C 0.16 3.67 1.56 -68.75 -0.11 3.56 16 10 H 0.01 0.18 7.20 -51.93 -0.37 -0.20 16 11 C 0.06 1.33 5.74 37.21 0.21 1.54 16 12 O -0.40 -8.35 10.83 -35.23 -0.38 -8.73 16 13 C 0.07 1.14 7.01 37.21 0.26 1.40 16 14 C 0.01 0.21 5.43 -3.71 -0.02 0.19 16 15 N -0.52 -10.10 3.86 -227.73 -0.88 -10.98 16 16 C 0.07 1.21 4.12 -3.83 -0.02 1.19 16 17 C -0.08 -1.18 1.94 -90.79 -0.18 -1.35 16 18 H 0.08 1.06 6.24 -51.93 -0.32 0.74 16 19 C -0.13 -1.51 4.92 -27.16 -0.13 -1.64 16 20 C -0.12 -1.20 5.75 -26.90 -0.15 -1.36 16 21 C -0.08 -0.86 6.46 37.20 0.24 -0.62 16 22 S -0.29 -4.03 22.33 -107.50 -2.40 -6.43 16 23 C -0.05 -0.79 5.64 37.21 0.21 -0.58 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.08 1.81 3.39 -51.93 -0.18 1.63 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.08 1.11 6.29 -51.93 -0.33 0.78 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.10 1.97 6.06 -51.93 -0.31 1.65 16 33 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.12 1.98 7.62 -51.93 -0.40 1.59 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -28.41 307.61 -8.97 -37.38 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.51 Total: 1.89 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.07 Total: -9.48 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.11 Total: -36.24 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.38 Total: -8.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.14 Total: 16.99 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.40 Total: -6.43 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.41 -8.97 -37.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260199505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.335 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds