Wall clock time and date at job start Mon Mar 30 2020 05:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99890 * 2 1 4 4 H 1.48491 * 109.47594 * 270.00304 * 3 2 1 5 5 H 1.48502 * 109.47093 * 30.00614 * 3 2 1 6 6 H 1.48506 * 109.47011 * 150.00273 * 3 2 1 7 7 C 1.37873 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99881 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00049 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.50632 * 59.90934 * 9 7 2 11 11 C 1.53094 * 109.50242 * 299.77706 * 9 7 2 12 12 O 1.43020 * 109.29099 * 183.23808 * 11 9 7 13 13 C 1.43010 * 113.73720 * 58.60186 * 12 11 9 14 14 C 1.53101 * 109.29497 * 301.39971 * 13 12 11 15 15 N 1.47009 * 109.25709 * 56.82473 * 14 13 12 16 16 C 1.46901 * 110.99935 * 177.60680 * 15 14 13 17 17 C 1.52997 * 109.47562 * 294.19762 * 16 15 14 18 18 H 1.09002 * 109.38792 * 56.43605 * 17 16 15 19 19 C 1.52580 * 109.39104 * 176.13993 * 17 16 15 20 20 C 1.52581 * 110.72330 * 190.82539 * 19 17 16 21 21 C 1.53091 * 109.95951 * 289.32245 * 20 19 17 22 22 S 1.81752 * 108.83937 * 63.02509 * 21 20 19 23 23 C 1.53097 * 109.38970 * 296.63994 * 17 16 15 24 24 H 0.97003 * 119.99876 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.51339 * 303.15002 * 11 9 7 26 26 H 1.08996 * 109.50875 * 63.23870 * 11 9 7 27 27 H 1.08998 * 109.51068 * 181.44185 * 13 12 11 28 28 H 1.09009 * 109.50921 * 61.35418 * 13 12 11 29 29 H 1.09004 * 109.50788 * 176.75992 * 14 13 12 30 30 H 1.09003 * 109.50408 * 296.89070 * 14 13 12 31 31 H 1.09000 * 109.46765 * 54.20030 * 16 15 14 32 32 H 1.09001 * 109.47078 * 174.19934 * 16 15 14 33 33 H 1.09002 * 109.22595 * 311.14488 * 19 17 16 34 34 H 1.08993 * 109.22433 * 70.50625 * 19 17 16 35 35 H 1.09002 * 109.39070 * 169.17611 * 20 19 17 36 36 H 1.09001 * 109.30993 * 49.42523 * 20 19 17 37 37 H 1.09004 * 109.57802 * 303.22483 * 21 20 19 38 38 H 1.08994 * 109.58137 * 182.83042 * 21 20 19 39 39 H 1.09004 * 109.57441 * 296.62784 * 23 17 16 40 40 H 1.08998 * 109.57986 * 57.01521 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8752 -0.6795 0.8895 11 6 4.0232 -0.4766 -1.2518 12 8 5.4514 -0.5450 -1.2852 13 6 5.9638 -1.8801 -1.2864 14 6 5.4718 -2.6120 -0.0348 15 7 4.0025 -2.5798 -0.0006 16 6 3.4865 -3.3217 1.1576 17 6 3.8198 -4.8067 1.0018 18 1 4.8964 -4.9251 0.8789 19 6 3.3685 -5.5608 2.2492 20 6 3.9182 -6.9841 2.2481 21 6 3.2142 -7.8154 1.1724 22 16 3.5833 -7.1001 -0.4572 23 6 3.1033 -5.3617 -0.2321 24 1 -0.4850 0.8401 -0.0004 25 1 3.6155 -0.9590 -2.1402 26 1 3.7087 0.5667 -1.2275 27 1 7.0534 -1.8518 -1.2867 28 1 5.6131 -2.4039 -2.1757 29 1 5.8127 -3.6470 -0.0607 30 1 5.8675 -2.1198 0.8537 31 1 3.9474 -2.9395 2.0685 32 1 2.4054 -3.1962 1.2172 33 1 3.7289 -5.0375 3.1349 34 1 2.2794 -5.5966 2.2725 35 1 3.7491 -7.4381 3.2245 36 1 4.9882 -6.9571 2.0420 37 1 2.1378 -7.7978 1.3435 38 1 3.5752 -8.8431 1.2104 39 1 2.0248 -5.2964 -0.0884 40 1 3.3919 -4.7863 -1.1117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260199505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:48 Heat of formation + Delta-G solvation = -63.274941 kcal Electronic energy + Delta-G solvation = -20071.831404 eV Core-core repulsion = 17204.680737 eV Total energy + Delta-G solvation = -2867.150668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71012 -38.53985 -36.33513 -34.96870 -32.83808 -32.25007 -29.07531 -28.18450 -27.12600 -25.47360 -23.95547 -22.69822 -21.23198 -20.82304 -19.07737 -17.80959 -17.60803 -17.02924 -16.45012 -16.13555 -15.82129 -15.71289 -15.38986 -15.23279 -14.85484 -14.62319 -14.33146 -14.22791 -13.65522 -13.42507 -13.09760 -13.05969 -12.72580 -12.54325 -12.31025 -12.26557 -12.10332 -11.98924 -11.67057 -11.45558 -11.20798 -11.09203 -10.87817 -10.57787 -10.39016 -9.12589 -8.64162 -8.35626 -6.39291 0.90398 1.23687 1.30566 1.38460 1.65274 2.22884 2.90392 2.93201 3.08121 3.68751 3.83769 3.95629 4.02266 4.09699 4.20183 4.24846 4.28652 4.37044 4.44282 4.48555 4.54312 4.62387 4.67619 4.74774 4.84451 4.87269 4.90848 4.92281 4.96943 5.09346 5.18886 5.20059 5.22632 5.39610 5.42996 5.92606 6.15605 6.28148 6.57992 6.68125 7.24944 8.79752 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.006001 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.521956 B = 4664.687240 C = 5300.303796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.025 3.975 3 Si 0.927 3.073 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.054 0.946 9 C 0.164 3.836 10 H -0.010 1.010 11 C 0.066 3.934 12 O -0.411 6.411 13 C 0.060 3.940 14 C 0.014 3.986 15 N -0.528 5.528 16 C 0.073 3.927 17 C -0.069 4.069 18 H 0.087 0.913 19 C -0.125 4.125 20 C -0.110 4.110 21 C -0.073 4.073 22 S -0.311 6.311 23 C -0.048 4.048 24 H 0.268 0.732 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.030 0.970 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.063 0.937 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.177 -12.358 3.631 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.174 4.174 3 Si 0.754 3.246 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.543 4.543 8 H 0.072 0.928 9 C 0.055 3.945 10 H 0.007 0.993 11 C -0.011 4.011 12 O -0.330 6.330 13 C -0.016 4.016 14 C -0.114 4.114 15 N -0.253 5.253 16 C -0.056 4.056 17 C -0.089 4.089 18 H 0.105 0.895 19 C -0.163 4.163 20 C -0.149 4.149 21 C -0.221 4.221 22 S -0.084 6.084 23 C -0.196 4.196 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.367 -12.854 2.262 17.308 hybrid contribution -0.818 1.954 1.584 2.645 sum 10.549 -10.900 3.846 15.649 Atomic orbital electron populations 1.69985 1.07642 1.28064 1.51839 1.25612 0.95369 1.02004 0.94427 0.86188 0.79016 0.80272 0.79112 1.18839 1.21549 1.18326 1.21023 0.89535 0.93606 1.50125 0.92796 1.20032 0.94591 0.86906 0.92939 0.99269 1.23055 0.79705 0.99350 0.98950 1.87851 1.21209 1.28751 1.95176 1.22863 0.99844 0.81978 0.96940 1.22921 0.88369 1.02125 0.97969 1.62042 1.07606 1.13475 1.42183 1.22040 1.00484 0.92710 0.90379 1.21284 1.00666 0.92934 0.94032 0.89460 1.21565 1.01010 0.96277 0.97433 1.21656 1.00587 0.93593 0.99061 1.23533 1.03843 1.02572 0.92141 1.86823 1.86948 1.11077 1.23511 1.23262 1.01754 0.92122 1.02480 0.92232 0.92840 0.91551 0.85822 0.92398 0.87615 0.95178 0.95533 0.91997 0.90395 0.92487 0.88595 0.90371 0.89908 0.86152 0.91868 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.52 13.96 21.45 0.30 -56.23 16 2 C 0.02 1.41 5.45 84.65 0.46 1.87 16 3 Si 0.93 44.17 24.35 68.60 1.67 45.84 16 4 H -0.26 -11.95 6.90 99.48 0.69 -11.26 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.26 -12.04 6.53 99.48 0.65 -11.39 16 7 C -0.50 -27.72 8.39 25.60 0.21 -27.51 16 8 H 0.05 3.25 6.81 -2.91 -0.02 3.23 16 9 C 0.16 7.67 1.56 44.18 0.07 7.74 16 10 H -0.01 -0.51 7.20 -2.39 -0.02 -0.52 16 11 C 0.07 2.95 5.74 72.01 0.41 3.36 16 12 O -0.41 -16.27 10.83 -148.98 -1.61 -17.88 16 13 C 0.06 1.84 7.01 72.02 0.50 2.34 16 14 C 0.01 0.44 5.43 86.32 0.47 0.91 16 15 N -0.53 -20.45 3.86 -874.40 -3.38 -23.83 16 16 C 0.07 2.62 4.12 86.30 0.36 2.97 16 17 C -0.07 -1.88 1.94 -10.90 -0.02 -1.90 16 18 H 0.09 2.21 6.24 -2.39 -0.01 2.20 16 19 C -0.12 -2.79 4.92 30.32 0.15 -2.64 16 20 C -0.11 -1.87 5.75 30.49 0.18 -1.70 16 21 C -0.07 -1.36 6.46 72.01 0.46 -0.90 16 22 S -0.31 -8.07 22.33 -56.49 -1.26 -9.33 16 23 C -0.05 -1.44 5.64 72.01 0.41 -1.04 16 24 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 25 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.07 3.08 3.39 -2.39 -0.01 3.07 16 27 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.11 2.70 6.29 -2.39 -0.02 2.68 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.03 0.93 8.09 -2.39 -0.02 0.91 16 32 H 0.06 2.64 6.06 -2.39 -0.01 2.63 16 33 H 0.08 1.63 8.07 -2.39 -0.02 1.61 16 34 H 0.06 1.39 8.08 -2.39 -0.02 1.37 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.10 3.33 7.62 -2.39 -0.02 3.31 16 Total: -1.00 -63.01 307.61 0.31 -62.70 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.93 Total: 15.20 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 3.66 Total: -16.48 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -3.08 Total: -80.05 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.61 Total: -17.88 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.67 Total: 45.84 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.26 Total: -9.33 kcal Total: -63.01 0.31 -62.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260199505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.574 kcal (2) G-P(sol) polarization free energy of solvation -63.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds